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Properties
| Property Name | Value |
|---|
| TranscriptId | 229694 |
| Track | FilteredModels2 |
| ProteinId | 229608 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:208836..211358 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_78 ID=mRNA_78|Name=jgi.p|Nanoce1779_2|229608|organism=Nannochloropsis oceanica|type=mRNA|length=2294bp
TTCCAACGAGGTCGAATCAAGTCGGGAGGGCGAGGAGCGAGACTCTCAGC
CTCCCGGGGAAGGTCATGATTCTCTCGTCTACACCACACGCAAGATTACG
CAAAATAGATAGATACAAGTCCGTATTTCAAAGCCACACACGAACATCAC
ACACGCGTATGCATCTTCACTCACGTCTCCTCTATCCTTACACCCTACAG
CACAGTGTGCACAGGCTTCTGGCAGAATCAAAGCCCACAACAAGGCCGCC
GCATCCACCAGTCAACCTCCCGCTCGAGCAAAGATGGGGAAATCAAAAGG
GAGCGCGCTCAGCTCCTCCAAGAGCAGCGACAACCCTAACCGAAAGGCCT
CGGATGTCAAGTACAAGGGTGGAAATCTCCGCGACCGGGCCACCATCAAC
CGCCTCCAGATGTACCGGGGCGGCAAGCCCATCCGCAACAAGAAAGGCAA
AATTGTTGGGGGGGTGCTTATGATGCGGAATAAGGTCGGCGGACAAGCCA
TCACGGGCGCCACCGGGCGGACGCAGCCGGACCGACGCTGGTTTGGTAAC
ACCCGCGTGATTTCGCAGGTGGACTTGGACAGATTCCGGGAGGAGATGAC
GACGCGGGCCGCGGATCCTTTTAGTGTAATCTTGCGACGCAAAAAGATCC
CAATGGGCCTGTTAGTGGACACCGAAAAGGTGCAACGCATGAATTTGTTG
CAGACCGAGACATATCAGGCGACGTTCGGGGCCAAGTCGACGCGGAAGCG
ACCCAAGCTCTCGGCAGGGGTGATGGAGGCGGCCATGGGGGGTGTGGCAG
GCGGGTCGGGCGTCGGAGGGGATTACGCTTCTTTGCTTGAGCGCGTAAAT
GTCGACCAGGCCAAATACCAAGCGCCGGGGCACACGGATGGGGCATTGGT
CGAGGAGGCTGAATTTAGGGTGGAGCGGCGGCATGATTTATTCGACAAAG
GCCAAAGTCGGAGGATTTGGGGGGAGCTGTACAAGGTTATTGATTGCTCA
GATGTCGTCATTCAAGTCTTGGACGCCCGCAACATCCCTGGTACCCGTTG
TGACCACTTGGAGAAGCATTTGAAGAAGAATGCGAGTCATAAGCATTTGA
TTCTCATCGTCAACAAATGTGACCTGGTTCCTGCGTGGGTCGTCCGTCGA
TGGGTGAAGATCCTGTCGGCCTCCTACCCTACCCTTGCCTTCCACGCCTC
CATCACCAACTCCTTCGGGAAAGGCAGCCTGATCAACCTCCTTCGACAAT
ACGCTAAGCTCCACCAGGACAAGAAGCAGATCTCCGTGGGTGTGGTGGGC
TATCCCAACGTAGGGAAGTCGTCCATCATCAACACATTGAAGAGTAAGAA
GGTATGCAAAGTGGCCCCTATCCCGGGGGAGACCAAAGTTTGGCAGTACA
TCACCTTAATGAAGCGAATTTACCTGATCGACTGTCCTGGCATAGTGTAT
GACACGGGCGATGATGAGACGGCCATCGTGCTCAAGGGCGTGGTGCGCGC
CGAGCGTCTGCCGGACCCGACGGAGTTTATTGCTCCTATCTTGGAGCTGG
TCAAGCCGGAATATATGGTGCGGACGTATGGAATCAAGGAGTGGAAGGAT
GCGCTAGATTTCATGACCAAGGTAGCAAAGAGGACGGGGAAGTTGGTGAA
GGGGGGAGAACCTGATTTGAATAATGTGGCTGTGTCGATTATCAATGATT
TTCAACGTGGGAAACTACCTCATTTCGTGGCACCTCCGCCCAAGGAGGGG
GAATGAAGAGGAGAACGAAGAGGAGGAGGAAGCGGAGGATGAGGAAGAAG
AAGAAGAAGAAGAAGAAGTAGAAGAGGAAGAAGAGGAGGAGGATGCATCT
GAGGATGAGGATGAGGAGGACAAGAAGGAGGAGGGGGAGGAGGCCGAGAA
GGCACAGGTGATTGTGGAAAAAGCTGCGCAGCGCTCCAGCAAGCGAGGGG
GAAGTCGGACTGCGGTCGCGCGTGCCATCAAGAAGCCGTCCGCTGCTCGC
ACCACCACCGCCAAGGTTGGAAGCTTAAAGAAAGATTCCACGGCCACCAT
CAGCACCACCACTACCAGAGGTGGCAGTGGAGGCTCCGGCTAGCTGGGAT
GACCTATAGTTCATGAGGAAGGAGGAGAGACGGTTGGGTCGTGTGCCGTG
TGTGTTTATACGAAAAATTCTCAACGATGTATTACAGCTTTTGCGCAACT
CCAAGTTGCGGTAGCGGTAGTGGTAGCATGCAATCTCTAGAAAATCATGT
CTTAAGAAAGAAGTAGAAAGGACTCACAAAGTAGATAATCTCAC back to topprotein sequence of jgi.p|Nanoce1779_2|229608 >mRNA_78-protein ID=mRNA_78-protein|Name=jgi.p|Nanoce1779_2|229608|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MGKSKGSALSSSKSSDNPNRKASDVKYKGGNLRDRATINRLQMYRGGKPI
RNKKGKIVGGVLMMRNKVGGQAITGATGRTQPDRRWFGNTRVISQVDLDR
FREEMTTRAADPFSVILRRKKIPMGLLVDTEKVQRMNLLQTETYQATFGA
KSTRKRPKLSAGVMEAAMGGVAGGSGVGGDYASLLERVNVDQAKYQAPGH
TDGALVEEAEFRVERRHDLFDKGQSRRIWGELYKVIDCSDVVIQVLDARN
IPGTRCDHLEKHLKKNASHKHLILIVNKCDLVPAWVVRRWVKILSASYPT
LAFHASITNSFGKGSLINLLRQYAKLHQDKKQISVGVVGYPNVGKSSIIN
TLKSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPGIVYDTGDDETAIVL
KGVVRAERLPDPTEFIAPILELVKPEYMVRTYGIKEWKDALDFMTKVAKR
TGKLVKGGEPDLNNVAVSIINDFQRGKLPHFVAPPPKEGE* back to topmRNA from alignment at scaffold_3:208836..211358- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_78 ID=mRNA_78|Name=jgi.p|Nanoce1779_2|229608|organism=Nannochloropsis oceanica|type=mRNA|length=2523bp|location=Sequence derived from alignment at scaffold_3:208836..211358- (Nannochloropsis oceanica)
TTCCAACGAGGTCGAATCAAGTCGGGAGGGCGAGGAGCGAGACTCTCAGC
CTCCCGGGGAAGGTCATGATTCTCTCGTCTACACCACACGCAAGATTACG
CAAAATAGATAGATACAAGTCCGTATTTCAAAGCCACACACGAACATCAC
ACACGCGTATGCATCTTCACTCACGTCTCCTCTATCCTTACACCCTACAG
CACAGTGTGCACAGGCTTCTGGCAGAATCAAAGCCCACAACAAGGCCGCC
GCATCCACCAGTCAACCTCCCGCTCGAGCAAAGATGGGGAAATCAAAAGG
GAGCGCGCTCAGCTCCTCCAAGAGCAGCGACAACCCTAACCGAAAGGCCT
CGGATGTCAAGTACAAGGGTGGAAATCTCCGCGACCGGGCCACCATCAAC
CGCCTCCAGATGTACCGGGGCGGCAAGCCCATCCGCAACAAGAAAGGCAA
AATTGTTGGGGGGGTGCTTATGATGCGGAATAAGGTCGGCGGACAAGCCA
TCACGGGCGCCACCGGGCGGACGCAGCCGGACCGACGCTGGTTTGGTAAC
ACCCGCGTGATTTCGCAGGTGGACTTGGACAGATTCCGGGAGGAGATGAC
GACGCGGGCCGCGGATCCTTTTAGTGTAATCTTGCGACGCAAAAAGATCC
CAATGGGCCTGTTAGTGGACACCGAAAAGGTGCAACGCATGAATTTGTTG
CAGACCGAGACATATCAGGCGACGTTCGGGGCCAAGTCGACGCGGAAGCG
ACCCAAGCTCTCGGCAGGGGTGATGGAGGCGGCCATGGGGGGTGTGGCAG
GCGGGTCGGGCGTCGGAGGGGATTACGCTTCTTTGCTTGAGCGCGTAAAT
GTCGACCAGGCCAAATACCAAGCGCCGGGGCACACGGATGGGGCATTGGT
CGAGGAGGCTGAATTTAGGGTGGAGCGGCGGCATGATTTATTCGACAAAG
GCCAAAGTCGGAGGATTTGGGGGGAGCTGTACAAGGTTATTGATTGCTCA
GATGTCGTCATTCAAGTCTTGGACGCCCGCAACATCCCTGGTACCCGTTG
TGACCACTTGGAGAAGCATTTGAAGAAGAATGCGAGTCATAAGCATTTGA
TTCTCATCGTCAACAAATGTGACCTGGTTCCTGCGTGGGTCGTCCGTCGA
TGGGTGAAGATCCTGTCGGCCTCCTACCCTACCCTTGCCTTCCACGCCTC
CATCACCAACTCCTTCGGGAAAGGCAGCCTGATCAACCTCCTTCGACAAT
ACGCTAAGCTCCACCAGGACAAGAAGCAGATCTCCGTGGGTGTGGTGGGC
TATCCCAACGTAGGGAAGTCGTCCATCATCAACACATTGAAGAGTAAGAA
GGTATGCAAAGTGGCCCCTATCCCGGGGGAGACCAAAGTTTGGCAGTACA
TCACCTTAATGAAGCGAATTTACCTGATCGACTGTCCTGGCATAGTGTAT
GACACGGGCGATGATGAGACGGCCATCGTGCTCAAGGGCGTGGTGCGCGC
CGAGCGTCTGCCGGACCCGACGGAGTTTATTGCTCCTATCTTGGAGCTGG
TCAAGCCGGAATATATGGTGCGGACGTATGGAATCAAGGAGTGGAAGGAT
GCGCTAGATTTCATGACCAAGGTAGCAAAGAGGACGGGGAAGTTGGTGAA
GGGGGGAGAACCTGATTTGAATAATGTGGCTGTGTCGATTATCAATGATT
TTCAACGTGGGAAACTACCTCATTTCGTGGCACCTCCGCCCAAGGAGGGG
GAAGAGGAAGGAGATGAGGCGGGGGAGGAGGACTGGATAGAAGGGGGGTT
GGTGGAGCTGGCTGCGGACGCGGCAGAGAAGGAAGAGGAGGAGGATGACG
GGGATGGGAATGAAGAGGAGAACGAAGAGGAGGAGGAAGCGGAGGATGAG
GAAGAAGAAGAAGAAGAAGAAGAAGTAGAAGAGGAAGAAGAGGAGGAGGA
TGCATCTGAGGATGAGGATGAGGAGGACAAGAAGGAGGAGGGGGAGGAGG
CCGAGAAGGCACAGGTGATTGTGGAAAAAGCTGCGCAGCGCTCCAGCAAG
CGAGGGGGAAGTCGGACTGCGGTCGCGCGTGCCATCAAGAAGCCGTCCGC
TGCTCGCACCACCACCGCCAAGGTTGGAAGCTTAAAGAAAGATTCCACGG
CCACCATCAGCACCACCACTACCAGAGGTAAAATCATGAACAAGGGCAAT
CCAATTGCAGCAGTTAAAAAGAAGGCGGTTGCTCGACAGCAGAAGATGCA
AGAGCTGCAGCAGCAACAGCCGCAGCTGAAAAAGAAGAGAGGATTGGAGG
TGGCAGTGGAGGCTCCGGCTAGCTGGGATGACCTATAGTTCATGAGGAAG
GAGGAGAGACGGTTGGGTCGTGTGCCGTGTGTGTTTATACGAAAAATTCT
CAACGATGTATTACAGCTTTTGCGCAACTCCAAGTTGCGGTAGCGGTAGT
GGTAGCATGCAATCTCTAGAAAATCATGTCTTAAGAAAGAAGTAGAAAGG
ACTCACAAAGTAGATAATCTCAC back to topCoding sequence (CDS) from alignment at scaffold_3:208836..211358- >mRNA_78 ID=mRNA_78|Name=jgi.p|Nanoce1779_2|229608|organism=Nannochloropsis oceanica|type=CDS|length=2946bp|location=Sequence derived from alignment at scaffold_3:208836..211358- (Nannochloropsis oceanica)
GGGAATGAATGGGGAAATCAAAAGGGAGCGCGCTCAGCTCCTCCAAGAGC
AGCGACAACCCTAACCGAAAGGCCTCGGATGTCAAGTACAAGGGTGGAAA
TCTCCGCGACCGGGCCACCATCAACCGCCTCCAGATGTACCGGGGCGGCA
AGCCCATCCGCAACAAGAAAGGCAAAATTGTTGGGGGGGTGCTTATGATG
CGGAATAAGGTCGGCGGACAAGCCATCACGGGCGCCACCGGGCGGACGCA
GCCGGACCGACGCTGGTTTGGTAACACCCGCGTGATTTCGCAGGTGGACT
TGGACAGATTCCGGGAGGAGATGACGACGCGGGCCGCGGATCCTTTTAGT
GTAATCTTGCGACGCAAAAAGATCCCAATGGGCCTGTTAGTGGACACCGA
AAAGGTGCAACGCATGAATTTGTTGCAGACCGAGACATATCAGGCGACGT
TCGGGGCCAAGTCGACGCGGAAGCGACCCAAGCTCTCGGCAGGGGTGATG
GAGGCGGCCATGGGGGGTGTGGCAGGCGGGTCGGGCGTCGGAGGGGATTA
CGCTTCTTTGCTTGAGCGCGTAAATGTCGACCAGGCCAAATACCAAGCGC
CGGGGCACACGGATGGGGCATTGGTCGAGGAGGCTGAATTTAGGGTGGAG
CGGCGGCATGATTTATTCGACAAAGGCCAAAGTCGGAGGATTTGGGGGGA
GCTGTACAAGGTTATTGATTGCTCAGATGTCGTCATTCAAGTCTTGGACG
CCCGCAACATCCCTGGTACCCGTTGTGACCACTTGGAGAAGCATTTGAAG
AAGAATGCGAGTCATAAGCATTTGATTCTCATCGTCAACAAATGTGACCT
GGTTCCTGCGTGGGTCGTCCGTCGATGGGTGAAGATCCTGTCGGCCTCCT
ACCCTACCCTTGCCTTCCACGCCTCCATCACCAACTCCTTCGGGAAAGGC
AGCCTGATCAACCTCCTTCGACAATACGCTAAGCTCCACCAGGACAAGAA
GCAGATCTCCGTGGGTGTGGTGGGCTATCCCAACGTAGGGAAGTCGTCCA
TCATCAACACATTGAAGAGTAAGAAGGTATGCAAAGTGGCCCCTATCCCG
GGGGAGACCAAAGTTTGGCAGTACATCACCTTAATGAAGCGAATTTACCT
GATCGACTGTCCTGGCATAGTGTATGACACGGGCGATGATGAGACGGCCA
TCGTGCTCAAGGGCGTGGTGCGCGCCGAGCGTCTGCCGGACCCGACGGAG
TTTATTGCTCCTATCTTGGAGCTGGTCAAGCCGGAATATATGGTGCGGAC
GTATGGAATCAAGGAGTGGAAGGATGCGCTAGATTTCATGACCAAGGTAG
CAAAGAGGACGGGGAAGTTGGTGAAGGGGGGAGAACCTGATTTGAATAAT
GTGGCTGTGTCGATTATCAATGATTTTCAACGTGGGAAACTACCTCATTT
CGTGGCACCTCCGCCCAAGGAGGGGGAATGAATGGGGAAATCAAAAGGGA
GCGCGCTCAGCTCCTCCAAGAGCAGCGACAACCCTAACCGAAAGGCCTCG
GATGTCAAGTACAAGGGTGGAAATCTCCGCGACCGGGCCACCATCAACCG
CCTCCAGATGTACCGGGGCGGCAAGCCCATCCGCAACAAGAAAGGCAAAA
TTGTTGGGGGGGTGCTTATGATGCGGAATAAGGTCGGCGGACAAGCCATC
ACGGGCGCCACCGGGCGGACGCAGCCGGACCGACGCTGGTTTGGTAACAC
CCGCGTGATTTCGCAGGTGGACTTGGACAGATTCCGGGAGGAGATGACGA
CGCGGGCCGCGGATCCTTTTAGTGTAATCTTGCGACGCAAAAAGATCCCA
ATGGGCCTGTTAGTGGACACCGAAAAGGTGCAACGCATGAATTTGTTGCA
GACCGAGACATATCAGGCGACGTTCGGGGCCAAGTCGACGCGGAAGCGAC
CCAAGCTCTCGGCAGGGGTGATGGAGGCGGCCATGGGGGGTGTGGCAGGC
GGGTCGGGCGTCGGAGGGGATTACGCTTCTTTGCTTGAGCGCGTAAATGT
CGACCAGGCCAAATACCAAGCGCCGGGGCACACGGATGGGGCATTGGTCG
AGGAGGCTGAATTTAGGGTGGAGCGGCGGCATGATTTATTCGACAAAGGC
CAAAGTCGGAGGATTTGGGGGGAGCTGTACAAGGTTATTGATTGCTCAGA
TGTCGTCATTCAAGTCTTGGACGCCCGCAACATCCCTGGTACCCGTTGTG
ACCACTTGGAGAAGCATTTGAAGAAGAATGCGAGTCATAAGCATTTGATT
CTCATCGTCAACAAATGTGACCTGGTTCCTGCGTGGGTCGTCCGTCGATG
GGTGAAGATCCTGTCGGCCTCCTACCCTACCCTTGCCTTCCACGCCTCCA
TCACCAACTCCTTCGGGAAAGGCAGCCTGATCAACCTCCTTCGACAATAC
GCTAAGCTCCACCAGGACAAGAAGCAGATCTCCGTGGGTGTGGTGGGCTA
TCCCAACGTAGGGAAGTCGTCCATCATCAACACATTGAAGAGTAAGAAGG
TATGCAAAGTGGCCCCTATCCCGGGGGAGACCAAAGTTTGGCAGTACATC
ACCTTAATGAAGCGAATTTACCTGATCGACTGTCCTGGCATAGTGTATGA
CACGGGCGATGATGAGACGGCCATCGTGCTCAAGGGCGTGGTGCGCGCCG
AGCGTCTGCCGGACCCGACGGAGTTTATTGCTCCTATCTTGGAGCTGGTC
AAGCCGGAATATATGGTGCGGACGTATGGAATCAAGGAGTGGAAGGATGC
GCTAGATTTCATGACCAAGGTAGCAAAGAGGACGGGGAAGTTGGTGAAGG
GGGGAGAACCTGATTTGAATAATGTGGCTGTGTCGATTATCAATGATTTT
CAACGTGGGAAACTACCTCATTTCGTGGCACCTCCGCCCAAGGAGG back to top
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