|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 167208 |
| Track | FilteredModels2 |
| ProteinId | 167122 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_21 | supercontig | scaffold_21:154784..156716 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7717 ID=mRNA_7717|Name=jgi.p|Nanoce1779_2|167122|organism=Nannochloropsis oceanica|type=mRNA|length=1832bp
TCCTCTCCTTTGTGTCTGTGGATGTGGGTATGGGGTTGCAAAGAGATGGA
ACAGAGACGAGCATGGAACATGCACGCGCGCGACTCATCGGATGGCGAGC
CTCGCTGAGCCTCTGGAACAACGAGCGACCGCCTGTGCAAGCAATATCTT
GGCCAAGCAAAGCCAAAGCCTCTAATGCGGACCATTTTAAAGCAGCCCAA
CTCATTCATCACCTTGACTTGACGCCACAACAAATCAGTGCATGGTATTG
ATGGGCAGTGGAGGGATGAGCAACAGCGGCAGGAGCAGCAAAAAAAGCCG
GGCCCTGTTGTCCCCACAGGTCATGAAGGCCACCGCCAGCAGCAGCAGCG
TAGAGGTTGTCATGACCCCCGCCATCGTTGAGGGTAGTAATGGTAAGGGT
AGTAATGGTAAGGTTATTCTCCAAGAAGAGAAGGAGATCATTGCCTTTGC
ACGACGCCTCGCGGCCAACGAAAAGAGGGACCGGGATCAAGCCCTGAAGC
GCCTCGAGGGCTGGATGACCAAGCACAAGCAGTTGTCGGAAAAGGACTTG
CTGAAGATCTGGAAGGGCCTCTTCTATTGCATGTGGATGTCTGACAAGGC
GCAGGTGCAGCAAGAGTTGGGGCGTGCCATCTCTCGTCTCGTCCACTGCT
TTGGACAGGACCTGGCCCGGGCTCACCTCTTTGTCGCCACCTTTTACCGC
ACCGTGCGCCGCGAGTGGACGGGGTTGGACCAGCATCGCCTGGACAAGTT
TTATTCCTTCATGCGCAGTATGCTTAGGGAGTGTTTGACATTTGCCCAGC
AACACGACTGGTCGTCCGAGGCGCTGGCGGCGGTGGTCTTGCCCTTGGAC
GCCGAAGTGCTCGTACAGCCCTGGCCAAATGGATTGCGTCTGCATATGTG
CGACCTGATTATTCCCGAGCTGGCCAAAATAGGAGGGCCGCGCTTGACCA
CACCGCAGGCCTTGGCGGTACTGCAACCCTTCTTGGTGGCTATGGCGACG
TCTGCGGACAGGGTCGTAGCGGAGCGGGCGCGAGCCCGAGTCTTGCTGGA
TCTCATTGAAGCCAAGAGTAAACAGAGGGTCAAGAGGGGGGCCCTTGACG
AGGACAGTGAGGGGGGGGACGGGGGGTCGATGTTGAATGGGGTGGACCTG
GAAGCGTTGCAGGCCACTGTGTTTGAGTTGGCCGCTGCACCTGAGACGCG
GGAGAGGTACCGGGCGGGCTTGTACGACGCCCACAAGGGTTTGCAAAGCC
TGACGGGGAAGAAACGAGCTTCTTCACCCAAGGCCATGATTGTGTCCTTG
CCGAAGCCAAGCGGGACGCCCGTGGAAAGGAATGGCAAGAGGGCGGGGAG
GGAGGGAGAGGAGGGAGAGGAGAGGAGGAGGACGATTGGATGGATGAAGA
TGAAGATAAAGATGAGGCTGGAAGTAAGGAAGAGGAAGGTAAGGCCAAAA
ATGAGGAGAGGATTCTCATGCTGCACCCGGAAAGGACAGCAAGAAGCGCA
AGGCCCAGAGAGAGATTGTTCCACTCAAACAGCAGCAGCAGCGAAAGGGA
GGGGAGAAGCTGGCTGTGGTAATCGACGTCAAGAAGGCCAAGAAGGAAGA
AAAACGGATGGCCTCACCCACTCTTACGCCGGTGTCGAGTGAGTCGAAGC
CAGCGAAGGGAGCTCTGGGTGACAAGGCGGAGAAAAAGACTAAGCTTTCG
AAGAAGGGTGGAAAAGAGGATACGACGATACTGACAAAAAAAAATGTCAT
TCTTCCAGCCATTCAGCCGAGCGAGACCAAGAGCAGCAGCGGCAAGCGCA
ACGCCGAGAAGGAGAAGGCCTTAGATACGATG back to topprotein sequence of jgi.p|Nanoce1779_2|167122 >mRNA_7717-protein ID=mRNA_7717-protein|Name=jgi.p|Nanoce1779_2|167122|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp
MVLMGSGGMSNSGRSSKKSRALLSPQVMKATASSSSVEVVMTPAIVEGSN
GKGSNGKVILQEEKEIIAFARRLAANEKRDRDQALKRLEGWMTKHKQLSE
KDLLKIWKGLFYCMWMSDKAQVQQELGRAISRLVHCFGQDLARAHLFVAT
FYRTVRREWTGLDQHRLDKFYSFMRSMLRECLTFAQQHDWSSEALAAVVL
PLDAEVLVQPWPNGLRLHMCDLIIPELAKIGGPRLTTPQALAVLQPFLVA
MATSADRVVAERARARVLLDLIEAKSKQRVKRGALDEDSEGGDGGSMLNG
VDLEALQATVFELAAAPETRERYRAGLYDAHKGLQSLTGKKRASSPKAMI
VSLPKPSGTPVERNGKRAGREGEEGEERRRTIGWMKMKIKMRLEVRKRKV
RPKMRRGFSCCTRKGQQEAQGPERDCSTQTAAAAKGRGEAGCGNRRQEGQ
EGRKTDGLTHSYAGVE* back to topmRNA from alignment at scaffold_21:154784..156716- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7717 ID=mRNA_7717|Name=jgi.p|Nanoce1779_2|167122|organism=Nannochloropsis oceanica|type=mRNA|length=1933bp|location=Sequence derived from alignment at scaffold_21:154784..156716- (Nannochloropsis oceanica)
TCCTCTCCTTTGTGTCTGTGGATGTGGGTATGGGGTTGCAAAGAGATGGA
ACAGAGACGAGCATGGAACATGCACGCGCGCGACTCATCGGATGGCGAGC
CTCGCTGAGCCTCTGGAACAACGAGCGACCGCCTGTGCAAGCAATATCTT
GGCCAAGCAAAGCCAAAGCCTCTAATGCGGACCATTTTAAAGCAGCCCAA
CTCATTCATCACCTTGACTTGACGCCACAACAAATCAGTGCATGGTATTG
ATGGGCAGTGGAGGGATGAGCAACAGCGGCAGGAGCAGCAAAAAAAGCCG
GGCCCTGTTGTCCCCACAGGTCATGAAGGCCACCGCCAGCAGCAGCAGCG
TAGAGGTTGTCATGACCCCCGCCATCGTTGAGGGTAGTAATGGTAAGGGT
AGTAATGGTAAGGTTATTCTCCAAGAAGAGAAGGAGATCATTGCCTTTGC
ACGACGCCTCGCGGCCAACGAAAAGAGGGACCGGGATCAAGCCCTGAAGC
GCCTCGAGGGCTGGATGACCAAGCACAAGCAGTTGTCGGAAAAGGACTTG
CTGAAGATCTGGAAGGGCCTCTTCTATTGCATGTGGATGTCTGACAAGGC
GCAGGTGCAGCAAGAGTTGGGGCGTGCCATCTCTCGTCTCGTCCACTGCT
TTGGACAGGACCTGGCCCGGGCTCACCTCTTTGTCGCCACCTTTTACCGC
ACCGTGCGCCGCGAGTGGACGGGGTTGGACCAGCATCGCCTGGACAAGTT
TTATTCCTTCATGCGCAGTATGCTTAGGGAGTGTTTGACATTTGCCCAGC
AACACGACTGGTCGTCCGAGGCGCTGGCGGCGGTGGTCTTGCCCTTGGAC
GCCGAAGTGCTCGTACAGCCCTGGCCAAATGGATTGCGTCTGCATATGTG
CGACCTGATTATTCCCGAGCTGGCCAAAATAGGAGGGCCGCGCTTGACCA
CACCGCAGGCCTTGGCGGTACTGCAACCCTTCTTGGTGGCTATGGCGACG
TCTGCGGACAGGGTCGTAGCGGAGCGGGCGCGAGCCCGAGTCTTGCTGGA
TCTCATTGAAGCCAAGAGTAAACAGAGGGTCAAGAGGGGGGCCCTTGACG
AGGACAGTGAGGGGGGGGACGGGGGGTCGATGTTGAATGGGGTGGACCTG
GAAGCGTTGCAGGCCACTGTGTTTGAGTTGGCCGCTGCACCTGAGACGCG
GGAGAGGTACCGGGCGGGCTTGTACGACGCCCACAAGGGTTTGCAAAGCC
TGACGGGGAAGAAACGAGCTTCTTCACCCAAGGCCATGATTGTGTCCTTG
CCGAAGCCAAGCGGGACGCCCGTGGAAAGGAATGGCAAGAGGGCGGGGAG
GGAGGGAGAGGAGGGAGAGGAGAGGGAGGAGGAGAGGGAGGAGGAGGAGG
AGGAGGAGGAGGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGACGATTGG
ATGGATGAAGATGAAGATAAAGATGAGGCTGGAAGTAAGGAAGAGGAAGG
TAAGGCCAAAAATGAGGAGTATAAAGAAAAAGAGGCTGGGGAGGAGGAAG
AGGAGGAGGAGGATTCTCATGCTGCACCCGGAAAGGACAGCAAGAAGCGC
AAGGCCCAGAGAGAGATTGTTCCACTCAAACAGCAGCAGCAGCGAAAGGG
AGGGGAGAAGCTGGCTGTGGTAATCGACGTCAAGAAGGCCAAGAAGGAAG
AAAAACGGATGGCCTCACCCACTCTTACGCCGGTGTCGAGTGAGTCGAAG
CCAGCGAAGGGAGCTCTGGGTGACAAGGCGGAGAAAAAGACTAAGCTTTC
GAAGAAGGGTGGAAAAGAGGATACGACGATACTGACAAAAAAAAATGTCA
TTCTTCCAGCCATTCAGCCGAGCGAGACCAAGAGCAGCAGCGGCAAGCGC
AACGCCGAGAAGGAGAAGGCCTTAGATACGATG back to topCoding sequence (CDS) from alignment at scaffold_21:154784..156716- >mRNA_7717 ID=mRNA_7717|Name=jgi.p|Nanoce1779_2|167122|organism=Nannochloropsis oceanica|type=CDS|length=4203bp|location=Sequence derived from alignment at scaffold_21:154784..156716- (Nannochloropsis oceanica)
GAGGATTCTCATGCTGCACCCGGAAAGGACAGCAAGAAGCGCAAGGCCCA
GAGAGAGATTGTTCCACTCAAACAGCAGCAGCAGCGAAAGGGAGGGGAGA
AGCTGGCTGTGGTAATCGACGTCAAGAAGGCCAAGAAGGAAGAAAAACGG
ATGGCCTCACCCACTCTTACGCCGGTGTCGAGTGAGAGGAGGACGATTGG
ATGGATGAAGATGAAGATAAAGATGAGGCTGGAAGTAAGGAAGAGGAAGG
TAAGGCCAAAAATGAGGAATGGTATTGATGGGCAGTGGAGGGATGAGCAA
CAGCGGCAGGAGCAGCAAAAAAAGCCGGGCCCTGTTGTCCCCACAGGTCA
TGAAGGCCACCGCCAGCAGCAGCAGCGTAGAGGTTGTCATGACCCCCGCC
ATCGTTGAGGGTAGTAATGGTAAGGGTAGTAATGGTAAGGTTATTCTCCA
AGAAGAGAAGGAGATCATTGCCTTTGCACGACGCCTCGCGGCCAACGAAA
AGAGGGACCGGGATCAAGCCCTGAAGCGCCTCGAGGGCTGGATGACCAAG
CACAAGCAGTTGTCGGAAAAGGACTTGCTGAAGATCTGGAAGGGCCTCTT
CTATTGCATGTGGATGTCTGACAAGGCGCAGGTGCAGCAAGAGTTGGGGC
GTGCCATCTCTCGTCTCGTCCACTGCTTTGGACAGGACCTGGCCCGGGCT
CACCTCTTTGTCGCCACCTTTTACCGCACCGTGCGCCGCGAGTGGACGGG
GTTGGACCAGCATCGCCTGGACAAGTTTTATTCCTTCATGCGCAGTATGC
TTAGGGAGTGTTTGACATTTGCCCAGCAACACGACTGGTCGTCCGAGGCG
CTGGCGGCGGTGGTCTTGCCCTTGGACGCCGAAGTGCTCGTACAGCCCTG
GCCAAATGGATTGCGTCTGCATATGTGCGACCTGATTATTCCCGAGCTGG
CCAAAATAGGAGGGCCGCGCTTGACCACACCGCAGGCCTTGGCGGTACTG
CAACCCTTCTTGGTGGCTATGGCGACGTCTGCGGACAGGGTCGTAGCGGA
GCGGGCGCGAGCCCGAGTCTTGCTGGATCTCATTGAAGCCAAGAGTAAAC
AGAGGGTCAAGAGGGGGGCCCTTGACGAGGACAGTGAGGGGGGGGACGGG
GGGTCGATGTTGAATGGGGTGGACCTGGAAGCGTTGCAGGCCACTGTGTT
TGAGTTGGCCGCTGCACCTGAGACGCGGGAGAGGTACCGGGCGGGCTTGT
ACGACGCCCACAAGGGTTTGCAAAGCCTGACGGGGAAGAAACGAGCTTCT
TCACCCAAGGCCATGATTGTGTCCTTGCCGAAGCCAAGCGGGACGCCCGT
GGAAAGGAATGGCAAGAGGGCGGGGAGGGAGGGAGAGGAGGGAGAGGAGA
GGAGGATTCTCATGCTGCACCCGGAAAGGACAGCAAGAAGCGCAAGGCCC
AGAGAGAGATTGTTCCACTCAAACAGCAGCAGCAGCGAAAGGGAGGGGAG
AAGCTGGCTGTGGTAATCGACGTCAAGAAGGCCAAGAAGGAAGAAAAACG
GATGGCCTCACCCACTCTTACGCCGGTGTCGAGTGAGAGGAGGACGATTG
GATGGATGAAGATGAAGATAAAGATGAGGCTGGAAGTAAGGAAGAGGAAG
GTAAGGCCAAAAATGAGGAATGGTATTGATGGGCAGTGGAGGGATGAGCA
ACAGCGGCAGGAGCAGCAAAAAAAGCCGGGCCCTGTTGTCCCCACAGGTC
ATGAAGGCCACCGCCAGCAGCAGCAGCGTAGAGGTTGTCATGACCCCCGC
CATCGTTGAGGGTAGTAATGGTAAGGGTAGTAATGGTAAGGTTATTCTCC
AAGAAGAGAAGGAGATCATTGCCTTTGCACGACGCCTCGCGGCCAACGAA
AAGAGGGACCGGGATCAAGCCCTGAAGCGCCTCGAGGGCTGGATGACCAA
GCACAAGCAGTTGTCGGAAAAGGACTTGCTGAAGATCTGGAAGGGCCTCT
TCTATTGCATGTGGATGTCTGACAAGGCGCAGGTGCAGCAAGAGTTGGGG
CGTGCCATCTCTCGTCTCGTCCACTGCTTTGGACAGGACCTGGCCCGGGC
TCACCTCTTTGTCGCCACCTTTTACCGCACCGTGCGCCGCGAGTGGACGG
GGTTGGACCAGCATCGCCTGGACAAGTTTTATTCCTTCATGCGCAGTATG
CTTAGGGAGTGTTTGACATTTGCCCAGCAACACGACTGGTCGTCCGAGGC
GCTGGCGGCGGTGGTCTTGCCCTTGGACGCCGAAGTGCTCGTACAGCCCT
GGCCAAATGGATTGCGTCTGCATATGTGCGACCTGATTATTCCCGAGCTG
GCCAAAATAGGAGGGCCGCGCTTGACCACACCGCAGGCCTTGGCGGTACT
GCAACCCTTCTTGGTGGCTATGGCGACGTCTGCGGACAGGGTCGTAGCGG
AGCGGGCGCGAGCCCGAGTCTTGCTGGATCTCATTGAAGCCAAGAGTAAA
CAGAGGGTCAAGAGGGGGGCCCTTGACGAGGACAGTGAGGGGGGGGACGG
GGGGTCGATGTTGAATGGGGTGGACCTGGAAGCGTTGCAGGCCACTGTGT
TTGAGTTGGCCGCTGCACCTGAGACGCGGGAGAGGTACCGGGCGGGCTTG
TACGACGCCCACAAGGGTTTGCAAAGCCTGACGGGGAAGAAACGAGCTTC
TTCACCCAAGGCCATGATTGTGTCCTTGCCGAAGCCAAGCGGGACGCCCG
TGGAAAGGAATGGCAAGAGGGCGGGGAGGGAGGGAGAGGAGGGAGAGGAG
AGGAGGATTCTCATGCTGCACCCGGAAAGGACAGCAAGAAGCGCAAGGCC
CAGAGAGAGATTGTTCCACTCAAACAGCAGCAGCAGCGAAAGGGAGGGGA
GAAGCTGGCTGTGGTAATCGACGTCAAGAAGGCCAAGAAGGAAGAAAAAC
GGATGGCCTCACCCACTCTTACGCCGGTGTCGAGTGAGAGGAGGACGATT
GGATGGATGAAGATGAAGATAAAGATGAGGCTGGAAGTAAGGAAGAGGAA
GGTAAGGCCAAAAATGAGGAATGGTATTGATGGGCAGTGGAGGGATGAGC
AACAGCGGCAGGAGCAGCAAAAAAAGCCGGGCCCTGTTGTCCCCACAGGT
CATGAAGGCCACCGCCAGCAGCAGCAGCGTAGAGGTTGTCATGACCCCCG
CCATCGTTGAGGGTAGTAATGGTAAGGGTAGTAATGGTAAGGTTATTCTC
CAAGAAGAGAAGGAGATCATTGCCTTTGCACGACGCCTCGCGGCCAACGA
AAAGAGGGACCGGGATCAAGCCCTGAAGCGCCTCGAGGGCTGGATGACCA
AGCACAAGCAGTTGTCGGAAAAGGACTTGCTGAAGATCTGGAAGGGCCTC
TTCTATTGCATGTGGATGTCTGACAAGGCGCAGGTGCAGCAAGAGTTGGG
GCGTGCCATCTCTCGTCTCGTCCACTGCTTTGGACAGGACCTGGCCCGGG
CTCACCTCTTTGTCGCCACCTTTTACCGCACCGTGCGCCGCGAGTGGACG
GGGTTGGACCAGCATCGCCTGGACAAGTTTTATTCCTTCATGCGCAGTAT
GCTTAGGGAGTGTTTGACATTTGCCCAGCAACACGACTGGTCGTCCGAGG
CGCTGGCGGCGGTGGTCTTGCCCTTGGACGCCGAAGTGCTCGTACAGCCC
TGGCCAAATGGATTGCGTCTGCATATGTGCGACCTGATTATTCCCGAGCT
GGCCAAAATAGGAGGGCCGCGCTTGACCACACCGCAGGCCTTGGCGGTAC
TGCAACCCTTCTTGGTGGCTATGGCGACGTCTGCGGACAGGGTCGTAGCG
GAGCGGGCGCGAGCCCGAGTCTTGCTGGATCTCATTGAAGCCAAGAGTAA
ACAGAGGGTCAAGAGGGGGGCCCTTGACGAGGACAGTGAGGGGGGGGACG
GGGGGTCGATGTTGAATGGGGTGGACCTGGAAGCGTTGCAGGCCACTGTG
TTTGAGTTGGCCGCTGCACCTGAGACGCGGGAGAGGTACCGGGCGGGCTT
GTACGACGCCCACAAGGGTTTGCAAAGCCTGACGGGGAAGAAACGAGCTT
CTTCACCCAAGGCCATGATTGTGTCCTTGCCGAAGCCAAGCGGGACGCCC
GTGGAAAGGAATGGCAAGAGGGCGGGGAGGGAGGGAGAGGAGGGAGAGGA
GAG back to top
|