jgi.p|Nanoce1779_2|574077, mRNA_771 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574077
Unique Name	mRNA_771
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1829
Alignment location	scaffold_2:396336..398164 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574163
Track	FilteredModels2
ProteinId	574077

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:396336..398164 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574077	gene_771	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574077	mRNA_771-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_771	CDS_771	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:396336..398164+
coding sequence from alignment at scaffold_2:396336..398164+

mRNA sequence

>mRNA_771 ID=mRNA_771|Name=jgi.p|Nanoce1779_2|574077|organism=Nannochloropsis oceanica|type=mRNA|length=1829bp
ACAGGCACACTAGATCAGCCGCCCCTCTCCATCAAAAAACAAGGAGGCAA
GAAAATCCAGAGGTAGAGATTTTCCTATGGTCTCTCTTTTCGCGTCGTCA
TCGTCCACGACCAAAGCAGGCAAGAAGCGGCCTCGCCCTACCACCACAGC
GACAGAGAAGGATGGCGCTTTTGTTGTCTCGAAGACACCTGCTGCGCCAG
CGCTAAGCCCGGATCCGTGCACGGATGCCACCGACGCGGCTGTCTCTCCA
TCTGCCGAGGTAGAGGAGGTTGCTTTAGGCGCTAGTGTGGCTTTCCTGTC
CTCAAGCAGCTGGACACAGCTAGGTCTAGCTGCGTGGATCCAGCGGGCTT
GTACGACCATGGGTTTTAAGCGTCCGACGCCGGTACAAGAAAAGTGCATC
CCCTCCGTGTTGCAAGGGCGAGACGTGATGGGGTGCGCCGAGACGGGGTC
GGGCAAGACGGCAGCATTTGCCTTGCCCATGCTTCATCGTCTGTCCGAGG
ACCCCTATGGAATCTTTGGCTTGGTCCTGACACCTACAAGGGAGCTGGCT
ATTCAGATTTCTGAGCAATTCCAGGCTTTGGGGGCGCCGTTGAATTTGAG
GCATACAGTGGTGATCGGCGGGGTTAGCATGGTGCATCAATCGGTTGAGT
TGGCGCGGCGCCCACACATAGTGGTGGCGACACCTGGGAGGCTTTGGGAT
CATTTGCGAGGCGCAGTCCCGCCTGATTTGAGCAAGTGCCGGTTTTTGGT
GCTGGATGAAGCGGATCGGTTGTTTTGTGATGGATTTGAGAAGCATTTAG
CGGCTATCCTGGGAGCAATGACGCACCCCCGGAGACAAACATTGTTATTC
AGTGCCACAATGACTCATTCGTTGGAAAATTTGAAGAGCTTGACGCGCGT
ACAACCCGTTTTATTCGATCTGACAAAAGAGCGGACGTTGCCTTCATCGT
TACAGCAACAGTATCTCTTCATGCCCGCGCAAGTCAAGATGTGCTACCTC
GTTTGTCTCCTCCGAAAGGTTCTCCTCCCCAACAAGAGTGCCACCAGCAG
CAGCACCTCCAGTGATGTGAAATCGGTCATTATCTTCGTCGGGACCTGTC
AACGCTGCCAGGAAGTTACCGAGGTAATGATAGAGTCAGGCCTAGCCGCC
GTGTCTCTCCACTCTGTCTTATCACAAAAAAGACGCTTGGCGTCTTTAGG
GAAGTTTAAGAGTAGTCTTGTCAAGGTTTTGGTGAGTACGGACGTGGCAA
GCAGGGGCTTGGATATCCCTGAGGTTGATTTGGTGGTCAATTTTGACTTG
CCGCGGGTGCCGTCTGATTACGTGCATCGGGTAGGTAGGACGGCGAGGGC
GGGAAGAAGGGGGAGGGCAGTAGCGATGGTGACTCAGTATGATGTTGCCC
TTTTGCAAAGGATTGAGGTGTTGGTGGGGAGGAAGATGGAGAAGTGCGAG
GATGTAAGGGAGGAGGAGGTGGTGAAGCTGTTAAATCCTGTAGCGAAGGC
GACGAGGGCCGCAAAGATGCGATTGATGGAGGTGGGCTTTGACTTCGAGG
TGGAAGAGCATTTAAGGAGGAAAAAGCGGGATAGGAAAGAGAGGTATCAG
AGGAAGAGGAACAGGGTGGCGAGGGAAGGGGGGGGAGAGAGTTGAAAGGC
GAGGACGGAATTGTCGAGTCACAAGAGGACAGAGAGAGGGAAAAAATAAA
TTTTGTTTGACAGGAATGCCATGCCTCTGTAACTCATCTTAGTTATGTTT
TAAGGGGATGCCGGTGGTTTAATAGCATTCGGTTTTCTCACATATATGTC
TTGAGTTTTCAAAATTGTCGAAATTTTAC

protein sequence of jgi.p|Nanoce1779_2|574077

>mRNA_771-protein ID=mRNA_771-protein|Name=jgi.p|Nanoce1779_2|574077|organism=Nannochloropsis oceanica|type=polypeptide|length=523bp
MVSLFASSSSTTKAGKKRPRPTTTATEKDGAFVVSKTPAAPALSPDPCTD
ATDAAVSPSAEVEEVALGASVAFLSSSSWTQLGLAAWIQRACTTMGFKRP
TPVQEKCIPSVLQGRDVMGCAETGSGKTAAFALPMLHRLSEDPYGIFGLV
LTPTRELAIQISEQFQALGAPLNLRHTVVIGGVSMVHQSVELARRPHIVV
ATPGRLWDHLRGAVPPDLSKCRFLVLDEADRLFCDGFEKHLAAILGAMTH
PRRQTLLFSATMTHSLENLKSLTRVQPVLFDLTKERTLPSSLQQQYLFMP
AQVKMCYLVCLLRKVLLPNKSATSSSTSSDVKSVIIFVGTCQRCQEVTEV
MIESGLAAVSLHSVLSQKRRLASLGKFKSSLVKVLVSTDVASRGLDIPEV
DLVVNFDLPRVPSDYVHRVGRTARAGRRGRAVAMVTQYDVALLQRIEVLV
GRKMEKCEDVREEEVVKLLNPVAKATRAAKMRLMEVGFDFEVEEHLRRKK
RDRKERYQRKRNRVAREGGGES*

mRNA from alignment at scaffold_2:396336..398164+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_771 ID=mRNA_771|Name=jgi.p|Nanoce1779_2|574077|organism=Nannochloropsis oceanica|type=mRNA|length=1829bp|location=Sequence derived from alignment at scaffold_2:396336..398164+ (Nannochloropsis oceanica)
ACAGGCACACTAGATCAGCCGCCCCTCTCCATCAAAAAACAAGGAGGCAA
GAAAATCCAGAGGTAGAGATTTTCCTATGGTCTCTCTTTTCGCGTCGTCA
TCGTCCACGACCAAAGCAGGCAAGAAGCGGCCTCGCCCTACCACCACAGC
GACAGAGAAGGATGGCGCTTTTGTTGTCTCGAAGACACCTGCTGCGCCAG
CGCTAAGCCCGGATCCGTGCACGGATGCCACCGACGCGGCTGTCTCTCCA
TCTGCCGAGGTAGAGGAGGTTGCTTTAGGCGCTAGTGTGGCTTTCCTGTC
CTCAAGCAGCTGGACACAGCTAGGTCTAGCTGCGTGGATCCAGCGGGCTT
GTACGACCATGGGTTTTAAGCGTCCGACGCCGGTACAAGAAAAGTGCATC
CCCTCCGTGTTGCAAGGGCGAGACGTGATGGGGTGCGCCGAGACGGGGTC
GGGCAAGACGGCAGCATTTGCCTTGCCCATGCTTCATCGTCTGTCCGAGG
ACCCCTATGGAATCTTTGGCTTGGTCCTGACACCTACAAGGGAGCTGGCT
ATTCAGATTTCTGAGCAATTCCAGGCTTTGGGGGCGCCGTTGAATTTGAG
GCATACAGTGGTGATCGGCGGGGTTAGCATGGTGCATCAATCGGTTGAGT
TGGCGCGGCGCCCACACATAGTGGTGGCGACACCTGGGAGGCTTTGGGAT
CATTTGCGAGGCGCAGTCCCGCCTGATTTGAGCAAGTGCCGGTTTTTGGT
GCTGGATGAAGCGGATCGGTTGTTTTGTGATGGATTTGAGAAGCATTTAG
CGGCTATCCTGGGAGCAATGACGCACCCCCGGAGACAAACATTGTTATTC
AGTGCCACAATGACTCATTCGTTGGAAAATTTGAAGAGCTTGACGCGCGT
ACAACCCGTTTTATTCGATCTGACAAAAGAGCGGACGTTGCCTTCATCGT
TACAGCAACAGTATCTCTTCATGCCCGCGCAAGTCAAGATGTGCTACCTC
GTTTGTCTCCTCCGAAAGGTTCTCCTCCCCAACAAGAGTGCCACCAGCAG
CAGCACCTCCAGTGATGTGAAATCGGTCATTATCTTCGTCGGGACCTGTC
AACGCTGCCAGGAAGTTACCGAGGTAATGATAGAGTCAGGCCTAGCCGCC
GTGTCTCTCCACTCTGTCTTATCACAAAAAAGACGCTTGGCGTCTTTAGG
GAAGTTTAAGAGTAGTCTTGTCAAGGTTTTGGTGAGTACGGACGTGGCAA
GCAGGGGCTTGGATATCCCTGAGGTTGATTTGGTGGTCAATTTTGACTTG
CCGCGGGTGCCGTCTGATTACGTGCATCGGGTAGGTAGGACGGCGAGGGC
GGGAAGAAGGGGGAGGGCAGTAGCGATGGTGACTCAGTATGATGTTGCCC
TTTTGCAAAGGATTGAGGTGTTGGTGGGGAGGAAGATGGAGAAGTGCGAG
GATGTAAGGGAGGAGGAGGTGGTGAAGCTGTTAAATCCTGTAGCGAAGGC
GACGAGGGCCGCAAAGATGCGATTGATGGAGGTGGGCTTTGACTTCGAGG
TGGAAGAGCATTTAAGGAGGAAAAAGCGGGATAGGAAAGAGAGGTATCAG
AGGAAGAGGAACAGGGTGGCGAGGGAAGGGGGGGGAGAGAGTTGAAAGGC
GAGGACGGAATTGTCGAGTCACAAGAGGACAGAGAGAGGGAAAAAATAAA
TTTTGTTTGACAGGAATGCCATGCCTCTGTAACTCATCTTAGTTATGTTT
TAAGGGGATGCCGGTGGTTTAATAGCATTCGGTTTTCTCACATATATGTC
TTGAGTTTTCAAAATTGTCGAAATTTTAC

Coding sequence (CDS) from alignment at scaffold_2:396336..398164+

>mRNA_771 ID=mRNA_771|Name=jgi.p|Nanoce1779_2|574077|organism=Nannochloropsis oceanica|type=CDS|length=1569bp|location=Sequence derived from alignment at scaffold_2:396336..398164+ (Nannochloropsis oceanica)
ATGGTCTCTCTTTTCGCGTCGTCATCGTCCACGACCAAAGCAGGCAAGAA
GCGGCCTCGCCCTACCACCACAGCGACAGAGAAGGATGGCGCTTTTGTTG
TCTCGAAGACACCTGCTGCGCCAGCGCTAAGCCCGGATCCGTGCACGGAT
GCCACCGACGCGGCTGTCTCTCCATCTGCCGAGGTAGAGGAGGTTGCTTT
AGGCGCTAGTGTGGCTTTCCTGTCCTCAAGCAGCTGGACACAGCTAGGTC
TAGCTGCGTGGATCCAGCGGGCTTGTACGACCATGGGTTTTAAGCGTCCG
ACGCCGGTACAAGAAAAGTGCATCCCCTCCGTGTTGCAAGGGCGAGACGT
GATGGGGTGCGCCGAGACGGGGTCGGGCAAGACGGCAGCATTTGCCTTGC
CCATGCTTCATCGTCTGTCCGAGGACCCCTATGGAATCTTTGGCTTGGTC
CTGACACCTACAAGGGAGCTGGCTATTCAGATTTCTGAGCAATTCCAGGC
TTTGGGGGCGCCGTTGAATTTGAGGCATACAGTGGTGATCGGCGGGGTTA
GCATGGTGCATCAATCGGTTGAGTTGGCGCGGCGCCCACACATAGTGGTG
GCGACACCTGGGAGGCTTTGGGATCATTTGCGAGGCGCAGTCCCGCCTGA
TTTGAGCAAGTGCCGGTTTTTGGTGCTGGATGAAGCGGATCGGTTGTTTT
GTGATGGATTTGAGAAGCATTTAGCGGCTATCCTGGGAGCAATGACGCAC
CCCCGGAGACAAACATTGTTATTCAGTGCCACAATGACTCATTCGTTGGA
AAATTTGAAGAGCTTGACGCGCGTACAACCCGTTTTATTCGATCTGACAA
AAGAGCGGACGTTGCCTTCATCGTTACAGCAACAGTATCTCTTCATGCCC
GCGCAAGTCAAGATGTGCTACCTCGTTTGTCTCCTCCGAAAGGTTCTCCT
CCCCAACAAGAGTGCCACCAGCAGCAGCACCTCCAGTGATGTGAAATCGG
TCATTATCTTCGTCGGGACCTGTCAACGCTGCCAGGAAGTTACCGAGGTA
ATGATAGAGTCAGGCCTAGCCGCCGTGTCTCTCCACTCTGTCTTATCACA
AAAAAGACGCTTGGCGTCTTTAGGGAAGTTTAAGAGTAGTCTTGTCAAGG
TTTTGGTGAGTACGGACGTGGCAAGCAGGGGCTTGGATATCCCTGAGGTT
GATTTGGTGGTCAATTTTGACTTGCCGCGGGTGCCGTCTGATTACGTGCA
TCGGGTAGGTAGGACGGCGAGGGCGGGAAGAAGGGGGAGGGCAGTAGCGA
TGGTGACTCAGTATGATGTTGCCCTTTTGCAAAGGATTGAGGTGTTGGTG
GGGAGGAAGATGGAGAAGTGCGAGGATGTAAGGGAGGAGGAGGTGGTGAA
GCTGTTAAATCCTGTAGCGAAGGCGACGAGGGCCGCAAAGATGCGATTGA
TGGAGGTGGGCTTTGACTTCGAGGTGGAAGAGCATTTAAGGAGGAAAAAG
CGGGATAGGAAAGAGAGGTATCAGAGGAAGAGGAACAGGGTGGCGAGGGA
AGGGGGGGGAGAGAGTTGA

Synonyms

Publications