jgi.p|Nanoce1779_2|599185, mRNA_7561 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599185
Unique NamemRNA_7561
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2060
Alignment locationscaffold_20:255230..257289 -

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Properties
Property NameValue
TranscriptId599271
TrackFilteredModels2
ProteinId599185
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:255230..257289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599185gene_7561Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599185mRNA_7561-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7561CDS_7561Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7561 ID=mRNA_7561|Name=jgi.p|Nanoce1779_2|599185|organism=Nannochloropsis oceanica|type=mRNA|length=2060bp
CAGGGCGCAACCATAGGGCCTCACAGCAAAACATACCCGCCGGCCGCAAG
CTCCAGTGGAATGCCTTCCGCGGACGCTGGAAGAACACCTCCCGCAGATC
CAGACAGGTACGGTTATGTGCTGTCGGAGCAAGAACAGAGCCACGCCCAC
AACAAAAAATTCGAGGCGGCTGCCGATTTCCAGGGGCCGGTTAAAAAACG
GACGTGCACGGACCCTTTATTCTTGTTATTGCTTTTGGGGGCATGGGCGG
CCATGACGTGGATTGGGCGCAAGGCCATGCTTGGGGGGCACGTAGAAGTC
CTGACCCATGGGTACGACTGGGAGGGCAACGTATGCCAAGGCGCCACGCC
CGTCTTCATGCCCATCAACATTAAGACTATGGGCATATGCTTAGCTGAAT
GCCCCAAAACCTTTGATCCGGCCGTCGTCTATTGCATCGGCAACGTGGCC
GCGACGGAAGACAACATCCTCAATGGGTACTGTCTACCCCAATATCCGAC
AAAGGAAGTCATGAATCGCTGCTACATCACAAACAGTACAGCCCTCGAGA
TCTTTAATATGGCCAAAGCCTACAAAAATGATTTAGACGTCACCATCCTC
TCTGAATTCTACGGCGACGTGTTCAATGCTCGGGCGTACATTTTTGGAAT
CGGCTTCGGTGCTGCACTTGTCCTTGGGTTCATCTGGACCTGGATACTCC
GTACACCCTGTCTGATTCACGTCGCTGTATGGATGGTCAATTTCCTGGTG
TGGGGCTTCTTGGGGGCGCTCGGTTCTTTGATGTACATGTGGTCGAATGA
TTGGAAGAGTGACATGCCCCAGACGCATACTGATAGGGAGGTCTGGGCAG
CGAAGGGGCTAGGCATTTTTTTCTTGATCTTGTGCGTATTGTGGTTGTGC
ATGCTTGTATTCTTGCGGAAAAGGATTAATTTGGCGATTGGCCTTGTGAA
AGAAGCGGCACGTGCGGTGATCTCGATGCCGCTGATGGTACTCTATCCTT
TCTTACAAGCAGCAGGTTTTCTCATATTCCTGGTACCCTGGTCGTTCTAC
TCCATCAATGTTGCGTCCATGGGTCATTTTGAGTCAAGGACGTTTGAAGG
ATTGAGGCTTGACCCCTCTGCTGCGGATGGGCCTCCGATTATCGTGCAAC
GATTTCAATACGGAGCAGGAAGTATAGATTATGCGTGGTACATGTTGTTT
GTGTTGCTGTGGACCGCGCAATTTATTATCGCCGTGGGGCAGATCACCCT
GGCTTTGGCTGTATCGACGTGGTACTTTACGAGGGAGAAGAGGGACATTG
GGAGTGGGACGTTGTGCAGTGCGATGAGTGTGACAGGGTGCTATCATTTA
GGTACTGCGGCTTTTGGCTCTTTGGTCATTGCGGTTGTTGAGTTCGTCCG
GTCCGTGATTGCGTGGATACAGAAAAAGGCGAAGAGATCGGAATATAAAG
CTGCTCAGTACCTCTTGTGTTGCTGTCAGTGCTGCTTGTGGTGTCTGGAG
AACGTTTTGAAGTTCGTGAATAAAAATGCGTATATTCAAACGGCTATAAA
TGGCACTTCATTTTGTACCTCGGGGAAGAAGGCTTTCTTTTTGATAGCGC
GGAATATATTGAGAATTGGTGCCGTTTCCTTAGTGAGTGAATTTGTTATC
ATCATCGGCAAGGTTTTCATTTCTGTGTGTGCCGGTGGGATCTCCTATTA
TAGCATGACCTTCCTCCTGGAAGATAAGATTCATTCTCCGGTTGGTCCTA
CAATTTTAGTGGTCATCCTGGCATGGTTTACAGCTGACATGTTTTGTCAG
ATTTTTTCAATGACCGTTTCAACGTTGCTTCAGGCTTTTATTGCTGATGA
GGAGATGTTTGGTCCTGAGGAACGTTATGCTTGCCCAGAGTTGGCAGCGT
ATATTGAGGAGAATGGAGGAGCGAGGGACGTAGGAGGGGGAAGGAGAAGC
AGTTTGAGTGCCGGGCATGGGCATGATGGGGGGAATGAAGAGGGCAGGAG
TGGAGGGGGAGGGAAGCACAGGCAAGAGGTCGATATAGTCGCCAAGGTAG
CTGTGTGAAA
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protein sequence of jgi.p|Nanoce1779_2|599185

>mRNA_7561-protein ID=mRNA_7561-protein|Name=jgi.p|Nanoce1779_2|599185|organism=Nannochloropsis oceanica|type=polypeptide|length=666bp
MPSADAGRTPPADPDRYGYVLSEQEQSHAHNKKFEAAADFQGPVKKRTCT
DPLFLLLLLGAWAAMTWIGRKAMLGGHVEVLTHGYDWEGNVCQGATPVFM
PINIKTMGICLAECPKTFDPAVVYCIGNVAATEDNILNGYCLPQYPTKEV
MNRCYITNSTALEIFNMAKAYKNDLDVTILSEFYGDVFNARAYIFGIGFG
AALVLGFIWTWILRTPCLIHVAVWMVNFLVWGFLGALGSLMYMWSNDWKS
DMPQTHTDREVWAAKGLGIFFLILCVLWLCMLVFLRKRINLAIGLVKEAA
RAVISMPLMVLYPFLQAAGFLIFLVPWSFYSINVASMGHFESRTFEGLRL
DPSAADGPPIIVQRFQYGAGSIDYAWYMLFVLLWTAQFIIAVGQITLALA
VSTWYFTREKRDIGSGTLCSAMSVTGCYHLGTAAFGSLVIAVVEFVRSVI
AWIQKKAKRSEYKAAQYLLCCCQCCLWCLENVLKFVNKNAYIQTAINGTS
FCTSGKKAFFLIARNILRIGAVSLVSEFVIIIGKVFISVCAGGISYYSMT
FLLEDKIHSPVGPTILVVILAWFTADMFCQIFSMTVSTLLQAFIADEEMF
GPEERYACPELAAYIEENGGARDVGGGRRSSLSAGHGHDGGNEEGRSGGG
GKHRQEVDIVAKVAV*
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mRNA from alignment at scaffold_20:255230..257289-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7561 ID=mRNA_7561|Name=jgi.p|Nanoce1779_2|599185|organism=Nannochloropsis oceanica|type=mRNA|length=2060bp|location=Sequence derived from alignment at scaffold_20:255230..257289- (Nannochloropsis oceanica)
CAGGGCGCAACCATAGGGCCTCACAGCAAAACATACCCGCCGGCCGCAAG
CTCCAGTGGAATGCCTTCCGCGGACGCTGGAAGAACACCTCCCGCAGATC
CAGACAGGTACGGTTATGTGCTGTCGGAGCAAGAACAGAGCCACGCCCAC
AACAAAAAATTCGAGGCGGCTGCCGATTTCCAGGGGCCGGTTAAAAAACG
GACGTGCACGGACCCTTTATTCTTGTTATTGCTTTTGGGGGCATGGGCGG
CCATGACGTGGATTGGGCGCAAGGCCATGCTTGGGGGGCACGTAGAAGTC
CTGACCCATGGGTACGACTGGGAGGGCAACGTATGCCAAGGCGCCACGCC
CGTCTTCATGCCCATCAACATTAAGACTATGGGCATATGCTTAGCTGAAT
GCCCCAAAACCTTTGATCCGGCCGTCGTCTATTGCATCGGCAACGTGGCC
GCGACGGAAGACAACATCCTCAATGGGTACTGTCTACCCCAATATCCGAC
AAAGGAAGTCATGAATCGCTGCTACATCACAAACAGTACAGCCCTCGAGA
TCTTTAATATGGCCAAAGCCTACAAAAATGATTTAGACGTCACCATCCTC
TCTGAATTCTACGGCGACGTGTTCAATGCTCGGGCGTACATTTTTGGAAT
CGGCTTCGGTGCTGCACTTGTCCTTGGGTTCATCTGGACCTGGATACTCC
GTACACCCTGTCTGATTCACGTCGCTGTATGGATGGTCAATTTCCTGGTG
TGGGGCTTCTTGGGGGCGCTCGGTTCTTTGATGTACATGTGGTCGAATGA
TTGGAAGAGTGACATGCCCCAGACGCATACTGATAGGGAGGTCTGGGCAG
CGAAGGGGCTAGGCATTTTTTTCTTGATCTTGTGCGTATTGTGGTTGTGC
ATGCTTGTATTCTTGCGGAAAAGGATTAATTTGGCGATTGGCCTTGTGAA
AGAAGCGGCACGTGCGGTGATCTCGATGCCGCTGATGGTACTCTATCCTT
TCTTACAAGCAGCAGGTTTTCTCATATTCCTGGTACCCTGGTCGTTCTAC
TCCATCAATGTTGCGTCCATGGGTCATTTTGAGTCAAGGACGTTTGAAGG
ATTGAGGCTTGACCCCTCTGCTGCGGATGGGCCTCCGATTATCGTGCAAC
GATTTCAATACGGAGCAGGAAGTATAGATTATGCGTGGTACATGTTGTTT
GTGTTGCTGTGGACCGCGCAATTTATTATCGCCGTGGGGCAGATCACCCT
GGCTTTGGCTGTATCGACGTGGTACTTTACGAGGGAGAAGAGGGACATTG
GGAGTGGGACGTTGTGCAGTGCGATGAGTGTGACAGGGTGCTATCATTTA
GGTACTGCGGCTTTTGGCTCTTTGGTCATTGCGGTTGTTGAGTTCGTCCG
GTCCGTGATTGCGTGGATACAGAAAAAGGCGAAGAGATCGGAATATAAAG
CTGCTCAGTACCTCTTGTGTTGCTGTCAGTGCTGCTTGTGGTGTCTGGAG
AACGTTTTGAAGTTCGTGAATAAAAATGCGTATATTCAAACGGCTATAAA
TGGCACTTCATTTTGTACCTCGGGGAAGAAGGCTTTCTTTTTGATAGCGC
GGAATATATTGAGAATTGGTGCCGTTTCCTTAGTGAGTGAATTTGTTATC
ATCATCGGCAAGGTTTTCATTTCTGTGTGTGCCGGTGGGATCTCCTATTA
TAGCATGACCTTCCTCCTGGAAGATAAGATTCATTCTCCGGTTGGTCCTA
CAATTTTAGTGGTCATCCTGGCATGGTTTACAGCTGACATGTTTTGTCAG
ATTTTTTCAATGACCGTTTCAACGTTGCTTCAGGCTTTTATTGCTGATGA
GGAGATGTTTGGTCCTGAGGAACGTTATGCTTGCCCAGAGTTGGCAGCGT
ATATTGAGGAGAATGGAGGAGCGAGGGACGTAGGAGGGGGAAGGAGAAGC
AGTTTGAGTGCCGGGCATGGGCATGATGGGGGGAATGAAGAGGGCAGGAG
TGGAGGGGGAGGGAAGCACAGGCAAGAGGTCGATATAGTCGCCAAGGTAG
CTGTGTGAAA
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Coding sequence (CDS) from alignment at scaffold_20:255230..257289-

>mRNA_7561 ID=mRNA_7561|Name=jgi.p|Nanoce1779_2|599185|organism=Nannochloropsis oceanica|type=CDS|length=1998bp|location=Sequence derived from alignment at scaffold_20:255230..257289- (Nannochloropsis oceanica)
ATGCCTTCCGCGGACGCTGGAAGAACACCTCCCGCAGATCCAGACAGGTA
CGGTTATGTGCTGTCGGAGCAAGAACAGAGCCACGCCCACAACAAAAAAT
TCGAGGCGGCTGCCGATTTCCAGGGGCCGGTTAAAAAACGGACGTGCACG
GACCCTTTATTCTTGTTATTGCTTTTGGGGGCATGGGCGGCCATGACGTG
GATTGGGCGCAAGGCCATGCTTGGGGGGCACGTAGAAGTCCTGACCCATG
GGTACGACTGGGAGGGCAACGTATGCCAAGGCGCCACGCCCGTCTTCATG
CCCATCAACATTAAGACTATGGGCATATGCTTAGCTGAATGCCCCAAAAC
CTTTGATCCGGCCGTCGTCTATTGCATCGGCAACGTGGCCGCGACGGAAG
ACAACATCCTCAATGGGTACTGTCTACCCCAATATCCGACAAAGGAAGTC
ATGAATCGCTGCTACATCACAAACAGTACAGCCCTCGAGATCTTTAATAT
GGCCAAAGCCTACAAAAATGATTTAGACGTCACCATCCTCTCTGAATTCT
ACGGCGACGTGTTCAATGCTCGGGCGTACATTTTTGGAATCGGCTTCGGT
GCTGCACTTGTCCTTGGGTTCATCTGGACCTGGATACTCCGTACACCCTG
TCTGATTCACGTCGCTGTATGGATGGTCAATTTCCTGGTGTGGGGCTTCT
TGGGGGCGCTCGGTTCTTTGATGTACATGTGGTCGAATGATTGGAAGAGT
GACATGCCCCAGACGCATACTGATAGGGAGGTCTGGGCAGCGAAGGGGCT
AGGCATTTTTTTCTTGATCTTGTGCGTATTGTGGTTGTGCATGCTTGTAT
TCTTGCGGAAAAGGATTAATTTGGCGATTGGCCTTGTGAAAGAAGCGGCA
CGTGCGGTGATCTCGATGCCGCTGATGGTACTCTATCCTTTCTTACAAGC
AGCAGGTTTTCTCATATTCCTGGTACCCTGGTCGTTCTACTCCATCAATG
TTGCGTCCATGGGTCATTTTGAGTCAAGGACGTTTGAAGGATTGAGGCTT
GACCCCTCTGCTGCGGATGGGCCTCCGATTATCGTGCAACGATTTCAATA
CGGAGCAGGAAGTATAGATTATGCGTGGTACATGTTGTTTGTGTTGCTGT
GGACCGCGCAATTTATTATCGCCGTGGGGCAGATCACCCTGGCTTTGGCT
GTATCGACGTGGTACTTTACGAGGGAGAAGAGGGACATTGGGAGTGGGAC
GTTGTGCAGTGCGATGAGTGTGACAGGGTGCTATCATTTAGGTACTGCGG
CTTTTGGCTCTTTGGTCATTGCGGTTGTTGAGTTCGTCCGGTCCGTGATT
GCGTGGATACAGAAAAAGGCGAAGAGATCGGAATATAAAGCTGCTCAGTA
CCTCTTGTGTTGCTGTCAGTGCTGCTTGTGGTGTCTGGAGAACGTTTTGA
AGTTCGTGAATAAAAATGCGTATATTCAAACGGCTATAAATGGCACTTCA
TTTTGTACCTCGGGGAAGAAGGCTTTCTTTTTGATAGCGCGGAATATATT
GAGAATTGGTGCCGTTTCCTTAGTGAGTGAATTTGTTATCATCATCGGCA
AGGTTTTCATTTCTGTGTGTGCCGGTGGGATCTCCTATTATAGCATGACC
TTCCTCCTGGAAGATAAGATTCATTCTCCGGTTGGTCCTACAATTTTAGT
GGTCATCCTGGCATGGTTTACAGCTGACATGTTTTGTCAGATTTTTTCAA
TGACCGTTTCAACGTTGCTTCAGGCTTTTATTGCTGATGAGGAGATGTTT
GGTCCTGAGGAACGTTATGCTTGCCCAGAGTTGGCAGCGTATATTGAGGA
GAATGGAGGAGCGAGGGACGTAGGAGGGGGAAGGAGAAGCAGTTTGAGTG
CCGGGCATGGGCATGATGGGGGGAATGAAGAGGGCAGGAGTGGAGGGGGA
GGGAAGCACAGGCAAGAGGTCGATATAGTCGCCAAGGTAGCTGTGTGA
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Synonyms
Publications