jgi.p|Nanoce1779_2|599185, gene_7561 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599185
Unique Namegene_7561
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_20:255230..257289 -

Link to JBrowse

Properties
Property NameValue
TranscriptId599271
ProteinId599185
Product namePlasma-membrane choline transporter-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:255230..257289 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL034ncniL034Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01630NO19G01630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599185mRNA_7561-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599185mRNA_7561Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|599185

>mRNA_7561-protein ID=mRNA_7561-protein|Name=jgi.p|Nanoce1779_2|599185|organism=Nannochloropsis oceanica|type=polypeptide|length=666bp
MPSADAGRTPPADPDRYGYVLSEQEQSHAHNKKFEAAADFQGPVKKRTCT
DPLFLLLLLGAWAAMTWIGRKAMLGGHVEVLTHGYDWEGNVCQGATPVFM
PINIKTMGICLAECPKTFDPAVVYCIGNVAATEDNILNGYCLPQYPTKEV
MNRCYITNSTALEIFNMAKAYKNDLDVTILSEFYGDVFNARAYIFGIGFG
AALVLGFIWTWILRTPCLIHVAVWMVNFLVWGFLGALGSLMYMWSNDWKS
DMPQTHTDREVWAAKGLGIFFLILCVLWLCMLVFLRKRINLAIGLVKEAA
RAVISMPLMVLYPFLQAAGFLIFLVPWSFYSINVASMGHFESRTFEGLRL
DPSAADGPPIIVQRFQYGAGSIDYAWYMLFVLLWTAQFIIAVGQITLALA
VSTWYFTREKRDIGSGTLCSAMSVTGCYHLGTAAFGSLVIAVVEFVRSVI
AWIQKKAKRSEYKAAQYLLCCCQCCLWCLENVLKFVNKNAYIQTAINGTS
FCTSGKKAFFLIARNILRIGAVSLVSEFVIIIGKVFISVCAGGISYYSMT
FLLEDKIHSPVGPTILVVILAWFTADMFCQIFSMTVSTLLQAFIADEEMF
GPEERYACPELAAYIEENGGARDVGGGRRSSLSAGHGHDGGNEEGRSGGG
GKHRQEVDIVAKVAV*
back to top
Synonyms
Publications