jgi.p|Nanoce1779_2|545282, mRNA_7519 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|545282
Unique Name	mRNA_7519
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2355
Alignment location	scaffold_20:163211..165565 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	545368
Track	FilteredModels2
ProteinId	545282

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:163211..165565 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|545282	gene_7519	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|545282	mRNA_7519-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7519	CDS_7519	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:163211..165565+
coding sequence from alignment at scaffold_20:163211..165565+

mRNA sequence

>mRNA_7519 ID=mRNA_7519|Name=jgi.p|Nanoce1779_2|545282|organism=Nannochloropsis oceanica|type=mRNA|length=2355bp
AACAGGGTGAAGCCGTTGCTGACATCCGCGGCCTTTTTTTCAGCCAGCAT
CCCCTGTCGGCTTTTCCTCTGCTTCATTCCTCAAGCGGGATTTCCTTTTG
GACGTAACCCCATCTGCGCTTTCCAAATTTCCTCTTTTCGACTGCAATCC
CAGAGGGCTTCCCTACTCCTTCCTCTCTCTTATCGGGGCTATTCCAGCAC
TCCAACGCCGCCCCAGTGCCACCTCCCCTGCGCCCCTGTCTACCCTAGTA
ATGGCAGCCTTGGACGCCTTGGAGATTTTTCTTGTAACGATCGCAGGCGT
TGTCGCTATATTTAGTATCGTCATCTGCTGTTCAGCCGCATGTCTGGCCT
GCTGCGGGGGTGCCTTTACACCCCTCTTTTGCTGGGCCGGGTGGATCCTA
GCCTGCTGCAACCCCTGGGGCGGACGCCCGTCTTCTTACCACGCAATGGG
TGGGCACGGGGGTGGTACTTTTACAACCGTCACCATCATCCCACCCCCAC
CCAATGTTGTAATTAGCAGCGACTTGCCACAGGCTTCGGCGCCGCCGGCA
ATGGCTGTTGCCGAGGCCATGCCGTGGCAGCAGCAGCACCACCACCACCA
CCTGAAACAACTCAATGAAACATTCTCCTCTGGAGTGGTGAGTGGGATCA
CCCTCGAAGGCAGTGCTCCACCTGCTGTTCCTCCCTCTTCCTCCCTCCCC
TCTATCTCTTACCAATATTCCACAAGCACAACCAGCAACATGACCACCAT
CAACGTCCCTCCCCCCCCACAAACCACTGCTCCACGCGACCTCTGGGCCC
TCCTCCTCTTCGTACTCCACATGTGCTTCCTCATCGCCCTCGCCATTCGC
CTCGGCCTTCCTTCTCTCGGTGTTTGGGAGCATGCCCTTGTCGATACTAG
CAGCCACACCATTCCCACGAACTACTCCACCCAAATAATCACCACCACCA
CCCACCTCCTCTATCTTTCCGTCCTCCTTGCCCTCCTCGCCGATCTTATA
GCCCTCGCCTGGCTCTATTTTATGCTACAATGGTCCTCCCTTCTAATCCA
CAGCACAATCTACACCACCGTCCTCGTCTCTTCCCTGCTCTCCTTCCTCT
CCCTCCTGCAAGGACGCCCCATCGGATTCCTTCTCTTCGCTTTGCTAGCC
CTCACGGGGCTCTGCCTCCTCTACGAGGAACAATCGCGTATCTTCCTCTC
CTCCGCTAATTTAGGTACTGCCTGTCGTGCCTTGCTCGAACATCGAAAAC
TATTCGGTGTCGCTTATCTGTTCCTCTTCCTTCAATTTCTCTTTGCATTA
ATCTGGTCGGTGGCGGCCTTGGGTGTATATGCCTCCATCGCTGCTGCCGC
TGAAAATGGCAAGCATCAGCAGCATCAAACGGCAGGACAGCATACATTAT
TATGTCTTTTCCTCGTCCTTTCTCTGTACTGGGGGTCGGAGGTGTGTCAG
AATGTCTTAAAATGCACGGTGGTTGGCACGATTGCCTCCTGGTGGTATTT
TCCCGATGTTTCCTTTGAGCCTGTTGCGCCAGCGTTAGCGCGAGCAGCAG
GGCCGAGCTTGGGTAGTATTTGTGTGGGCTCTTTCTTTGTAGGGGGTATT
GAGAGTTTCAGAGCGCTGCTACGTGGGATGGGGGGGGGAAGGGGGGGAGG
AACATTATGTTGTTGTTGTCGAGGGATTTGTGGGTGTGGATTGCTTGGGT
GGCTGATAGATTATGCGCTATCGTGCGTGGAAGCGATGTGGCGGACATTT
AATCGGTTTACCTTTGTCTTTGTGGGGGTGTGGGGGTATGGGTACCGGGA
GGGTGGGCGGTTGGCCATGAAGCTGTTTGAGGCCAAGGGGTGGGATTTGG
TTTTGAATGATTACTTGATAGGAAATGTTTTATTTTTGGGGTCGGTCATG
GTAGGGGGTATTGTGGGGTTTGTGGGAGTGGGGTTTACACGTATGTTTCC
GTATTTCTTCGTCGGGCTACCGTTGCCTTCTTTGTTTATTGGCGTGGTTG
GGTTTGTGATAGGTGTAGGGAACTGCTTGGTGTTGGTGAGTGTTTTATCG
TCGGCGGTGGACACGGTATTCGTCTGTTATGCTGCCGATCCGGGCGTGTT
GCAGGTAAACCGGCCGGTAGAATTTGCATGTTTGGAGGCTGCGTGGGAGG
GAGGGAGGATGGGGGAGCAGACACGGTTGAATGCAGTACAAGTGATGATT
TGAAAAGACGATTAAATAGTAGGGGAGGAAAGACAATTAAGATTATTTCA
AAAAAAAGTGAAGGGGTTAAATAGGATAGTACGTAAGTTGGAGGAGAGAA
AGAGAAATGTATCATTTCTTCCGCCAAACAAAGTAAAAGTCAGGAAAATG
AATGT

protein sequence of jgi.p|Nanoce1779_2|545282

>mRNA_7519-protein ID=mRNA_7519-protein|Name=jgi.p|Nanoce1779_2|545282|organism=Nannochloropsis oceanica|type=polypeptide|length=651bp
MAALDALEIFLVTIAGVVAIFSIVICCSAACLACCGGAFTPLFCWAGWIL
ACCNPWGGRPSSYHAMGGHGGGTFTTVTIIPPPPNVVISSDLPQASAPPA
MAVAEAMPWQQQHHHHHLKQLNETFSSGVVSGITLEGSAPPAVPPSSSLP
SISYQYSTSTTSNMTTINVPPPPQTTAPRDLWALLLFVLHMCFLIALAIR
LGLPSLGVWEHALVDTSSHTIPTNYSTQIITTTTHLLYLSVLLALLADLI
ALAWLYFMLQWSSLLIHSTIYTTVLVSSLLSFLSLLQGRPIGFLLFALLA
LTGLCLLYEEQSRIFLSSANLGTACRALLEHRKLFGVAYLFLFLQFLFAL
IWSVAALGVYASIAAAAENGKHQQHQTAGQHTLLCLFLVLSLYWGSEVCQ
NVLKCTVVGTIASWWYFPDVSFEPVAPALARAAGPSLGSICVGSFFVGGI
ESFRALLRGMGGGRGGGTLCCCCRGICGCGLLGWLIDYALSCVEAMWRTF
NRFTFVFVGVWGYGYREGGRLAMKLFEAKGWDLVLNDYLIGNVLFLGSVM
VGGIVGFVGVGFTRMFPYFFVGLPLPSLFIGVVGFVIGVGNCLVLVSVLS
SAVDTVFVCYAADPGVLQVNRPVEFACLEAAWEGGRMGEQTRLNAVQVMI
*

mRNA from alignment at scaffold_20:163211..165565+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7519 ID=mRNA_7519|Name=jgi.p|Nanoce1779_2|545282|organism=Nannochloropsis oceanica|type=mRNA|length=2355bp|location=Sequence derived from alignment at scaffold_20:163211..165565+ (Nannochloropsis oceanica)
AACAGGGTGAAGCCGTTGCTGACATCCGCGGCCTTTTTTTCAGCCAGCAT
CCCCTGTCGGCTTTTCCTCTGCTTCATTCCTCAAGCGGGATTTCCTTTTG
GACGTAACCCCATCTGCGCTTTCCAAATTTCCTCTTTTCGACTGCAATCC
CAGAGGGCTTCCCTACTCCTTCCTCTCTCTTATCGGGGCTATTCCAGCAC
TCCAACGCCGCCCCAGTGCCACCTCCCCTGCGCCCCTGTCTACCCTAGTA
ATGGCAGCCTTGGACGCCTTGGAGATTTTTCTTGTAACGATCGCAGGCGT
TGTCGCTATATTTAGTATCGTCATCTGCTGTTCAGCCGCATGTCTGGCCT
GCTGCGGGGGTGCCTTTACACCCCTCTTTTGCTGGGCCGGGTGGATCCTA
GCCTGCTGCAACCCCTGGGGCGGACGCCCGTCTTCTTACCACGCAATGGG
TGGGCACGGGGGTGGTACTTTTACAACCGTCACCATCATCCCACCCCCAC
CCAATGTTGTAATTAGCAGCGACTTGCCACAGGCTTCGGCGCCGCCGGCA
ATGGCTGTTGCCGAGGCCATGCCGTGGCAGCAGCAGCACCACCACCACCA
CCTGAAACAACTCAATGAAACATTCTCCTCTGGAGTGGTGAGTGGGATCA
CCCTCGAAGGCAGTGCTCCACCTGCTGTTCCTCCCTCTTCCTCCCTCCCC
TCTATCTCTTACCAATATTCCACAAGCACAACCAGCAACATGACCACCAT
CAACGTCCCTCCCCCCCCACAAACCACTGCTCCACGCGACCTCTGGGCCC
TCCTCCTCTTCGTACTCCACATGTGCTTCCTCATCGCCCTCGCCATTCGC
CTCGGCCTTCCTTCTCTCGGTGTTTGGGAGCATGCCCTTGTCGATACTAG
CAGCCACACCATTCCCACGAACTACTCCACCCAAATAATCACCACCACCA
CCCACCTCCTCTATCTTTCCGTCCTCCTTGCCCTCCTCGCCGATCTTATA
GCCCTCGCCTGGCTCTATTTTATGCTACAATGGTCCTCCCTTCTAATCCA
CAGCACAATCTACACCACCGTCCTCGTCTCTTCCCTGCTCTCCTTCCTCT
CCCTCCTGCAAGGACGCCCCATCGGATTCCTTCTCTTCGCTTTGCTAGCC
CTCACGGGGCTCTGCCTCCTCTACGAGGAACAATCGCGTATCTTCCTCTC
CTCCGCTAATTTAGGTACTGCCTGTCGTGCCTTGCTCGAACATCGAAAAC
TATTCGGTGTCGCTTATCTGTTCCTCTTCCTTCAATTTCTCTTTGCATTA
ATCTGGTCGGTGGCGGCCTTGGGTGTATATGCCTCCATCGCTGCTGCCGC
TGAAAATGGCAAGCATCAGCAGCATCAAACGGCAGGACAGCATACATTAT
TATGTCTTTTCCTCGTCCTTTCTCTGTACTGGGGGTCGGAGGTGTGTCAG
AATGTCTTAAAATGCACGGTGGTTGGCACGATTGCCTCCTGGTGGTATTT
TCCCGATGTTTCCTTTGAGCCTGTTGCGCCAGCGTTAGCGCGAGCAGCAG
GGCCGAGCTTGGGTAGTATTTGTGTGGGCTCTTTCTTTGTAGGGGGTATT
GAGAGTTTCAGAGCGCTGCTACGTGGGATGGGGGGGGGAAGGGGGGGAGG
AACATTATGTTGTTGTTGTCGAGGGATTTGTGGGTGTGGATTGCTTGGGT
GGCTGATAGATTATGCGCTATCGTGCGTGGAAGCGATGTGGCGGACATTT
AATCGGTTTACCTTTGTCTTTGTGGGGGTGTGGGGGTATGGGTACCGGGA
GGGTGGGCGGTTGGCCATGAAGCTGTTTGAGGCCAAGGGGTGGGATTTGG
TTTTGAATGATTACTTGATAGGAAATGTTTTATTTTTGGGGTCGGTCATG
GTAGGGGGTATTGTGGGGTTTGTGGGAGTGGGGTTTACACGTATGTTTCC
GTATTTCTTCGTCGGGCTACCGTTGCCTTCTTTGTTTATTGGCGTGGTTG
GGTTTGTGATAGGTGTAGGGAACTGCTTGGTGTTGGTGAGTGTTTTATCG
TCGGCGGTGGACACGGTATTCGTCTGTTATGCTGCCGATCCGGGCGTGTT
GCAGGTAAACCGGCCGGTAGAATTTGCATGTTTGGAGGCTGCGTGGGAGG
GAGGGAGGATGGGGGAGCAGACACGGTTGAATGCAGTACAAGTGATGATT
TGAAAAGACGATTAAATAGTAGGGGAGGAAAGACAATTAAGATTATTTCA
AAAAAAAGTGAAGGGGTTAAATAGGATAGTACGTAAGTTGGAGGAGAGAA
AGAGAAATGTATCATTTCTTCCGCCAAACAAAGTAAAAGTCAGGAAAATG
AATGT

Coding sequence (CDS) from alignment at scaffold_20:163211..165565+

>mRNA_7519 ID=mRNA_7519|Name=jgi.p|Nanoce1779_2|545282|organism=Nannochloropsis oceanica|type=CDS|length=1953bp|location=Sequence derived from alignment at scaffold_20:163211..165565+ (Nannochloropsis oceanica)
ATGGCAGCCTTGGACGCCTTGGAGATTTTTCTTGTAACGATCGCAGGCGT
TGTCGCTATATTTAGTATCGTCATCTGCTGTTCAGCCGCATGTCTGGCCT
GCTGCGGGGGTGCCTTTACACCCCTCTTTTGCTGGGCCGGGTGGATCCTA
GCCTGCTGCAACCCCTGGGGCGGACGCCCGTCTTCTTACCACGCAATGGG
TGGGCACGGGGGTGGTACTTTTACAACCGTCACCATCATCCCACCCCCAC
CCAATGTTGTAATTAGCAGCGACTTGCCACAGGCTTCGGCGCCGCCGGCA
ATGGCTGTTGCCGAGGCCATGCCGTGGCAGCAGCAGCACCACCACCACCA
CCTGAAACAACTCAATGAAACATTCTCCTCTGGAGTGGTGAGTGGGATCA
CCCTCGAAGGCAGTGCTCCACCTGCTGTTCCTCCCTCTTCCTCCCTCCCC
TCTATCTCTTACCAATATTCCACAAGCACAACCAGCAACATGACCACCAT
CAACGTCCCTCCCCCCCCACAAACCACTGCTCCACGCGACCTCTGGGCCC
TCCTCCTCTTCGTACTCCACATGTGCTTCCTCATCGCCCTCGCCATTCGC
CTCGGCCTTCCTTCTCTCGGTGTTTGGGAGCATGCCCTTGTCGATACTAG
CAGCCACACCATTCCCACGAACTACTCCACCCAAATAATCACCACCACCA
CCCACCTCCTCTATCTTTCCGTCCTCCTTGCCCTCCTCGCCGATCTTATA
GCCCTCGCCTGGCTCTATTTTATGCTACAATGGTCCTCCCTTCTAATCCA
CAGCACAATCTACACCACCGTCCTCGTCTCTTCCCTGCTCTCCTTCCTCT
CCCTCCTGCAAGGACGCCCCATCGGATTCCTTCTCTTCGCTTTGCTAGCC
CTCACGGGGCTCTGCCTCCTCTACGAGGAACAATCGCGTATCTTCCTCTC
CTCCGCTAATTTAGGTACTGCCTGTCGTGCCTTGCTCGAACATCGAAAAC
TATTCGGTGTCGCTTATCTGTTCCTCTTCCTTCAATTTCTCTTTGCATTA
ATCTGGTCGGTGGCGGCCTTGGGTGTATATGCCTCCATCGCTGCTGCCGC
TGAAAATGGCAAGCATCAGCAGCATCAAACGGCAGGACAGCATACATTAT
TATGTCTTTTCCTCGTCCTTTCTCTGTACTGGGGGTCGGAGGTGTGTCAG
AATGTCTTAAAATGCACGGTGGTTGGCACGATTGCCTCCTGGTGGTATTT
TCCCGATGTTTCCTTTGAGCCTGTTGCGCCAGCGTTAGCGCGAGCAGCAG
GGCCGAGCTTGGGTAGTATTTGTGTGGGCTCTTTCTTTGTAGGGGGTATT
GAGAGTTTCAGAGCGCTGCTACGTGGGATGGGGGGGGGAAGGGGGGGAGG
AACATTATGTTGTTGTTGTCGAGGGATTTGTGGGTGTGGATTGCTTGGGT
GGCTGATAGATTATGCGCTATCGTGCGTGGAAGCGATGTGGCGGACATTT
AATCGGTTTACCTTTGTCTTTGTGGGGGTGTGGGGGTATGGGTACCGGGA
GGGTGGGCGGTTGGCCATGAAGCTGTTTGAGGCCAAGGGGTGGGATTTGG
TTTTGAATGATTACTTGATAGGAAATGTTTTATTTTTGGGGTCGGTCATG
GTAGGGGGTATTGTGGGGTTTGTGGGAGTGGGGTTTACACGTATGTTTCC
GTATTTCTTCGTCGGGCTACCGTTGCCTTCTTTGTTTATTGGCGTGGTTG
GGTTTGTGATAGGTGTAGGGAACTGCTTGGTGTTGGTGAGTGTTTTATCG
TCGGCGGTGGACACGGTATTCGTCTGTTATGCTGCCGATCCGGGCGTGTT
GCAGGTAAACCGGCCGGTAGAATTTGCATGTTTGGAGGCTGCGTGGGAGG
GAGGGAGGATGGGGGAGCAGACACGGTTGAATGCAGTACAAGTGATGATT
TGA

Synonyms

Publications