jgi.p|Nanoce1779_2|672749, mRNA_7453 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|672749
Unique Name	mRNA_7453
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1141
Alignment location	scaffold_19:563434..564913 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	672835
Track	FilteredModels2
ProteinId	672749

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:563434..564913 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672749	gene_7453	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672749	mRNA_7453-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7453	CDS_7453	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:563434..564913+
coding sequence from alignment at scaffold_19:563434..564913+

mRNA sequence

>mRNA_7453 ID=mRNA_7453|Name=jgi.p|Nanoce1779_2|672749|organism=Nannochloropsis oceanica|type=mRNA|length=1141bp
AGGGAAGATTGCTCGGTGTTGGTCTTGGGCGTCGCATATCCCTGTCTCCT
GCTGTGGTTGTGGGTGGATTGGGGAACAGGAAAGAGGCGGGTGAATGTCC
GCCTTGGTGTATGGATAGATGATGCATTGCATTCCGGAAGGACGACAAAG
GGACAAGAAGAAGGGAGGGGGGACGACAAGACAAGCATATTCACGGTGGT
CTCTGAGATGTGGTGGCTGAAATGAGCGTGAGCTTTAGCCGTAGGTGCGA
CCTTTATTCATATTCACATGCCCACGACGAAGACGGACTTGCGCAAGCCG
CATCGCTAGTGCTGGCGGGGGAGGATGACCAGAGAGGACGAAAAAGCAGG
CGAGGAGAAGAGTGAGCGTATGGATTTGGGAGGGAGGCGTGGCTCAAAGC
AGGAGTGTTATGTACTCCCTCGCGTCACATGCACCCCCTCCATGACCACT
CGGACCAATCATCGACAGGCTCATGTGGCTGGCTGCGCCCTGCAGGGACC
AGATGGCATCACTGGTGTTGCTTTTGTATATCTCTCCCACAAACACATTG
ACCTCTTCTCGTCATCATCATAGTGCTCCTCTCGCTGCCTCCCTTATCCA
ACCTGCATACACAATCATCCGCAGGCGTGAGAAGGACCATGGCGTCTTCC
CTCTCTGTTGTTGTCAAGAGGGCAGGCGGCGCGGCCTTGGCCCGTCCTCT
GTCCCACGAAGTTCAGGAGGAATTTTACGCGTTCGGCGGCGGTACTAGGC
GGTGGTGGCCATCACCCCGGCCTCCCGCAACCATTTAAGCGTACGGCCAA
TGCTGAGGACCGCTATTTGAGGAGCACGAGTTGATTTGGGACGATCGGGG
TGGCGGCGGAGATGTGTCTGGATTTCGACGCGAGCTTTGTGCCCCAAGGA
GAGGCTGTGCGATGGTGGCTAGGCGGCTTCGGCTTCTTCTTCTCTCTGCT
CGGCCCTCGTCTCCCTCACGACCCAGGGGCAGCCAATCCGTGCGTGAACC
AAGACTGAGACGATGCCAGACCTTGGCCTCTCGTTCATCCAGATGGGAGG
GAGTCCGGCGGCGGAGGAAGAGGAGGCGGAGGAGGAGTAGACGGAGGGAG
GAAGGAGAGGGGGAGGGTGTTTGTGTCTAGGTAGGGAGGGT

protein sequence of jgi.p|Nanoce1779_2|672749

>mRNA_7453-protein ID=mRNA_7453-protein|Name=jgi.p|Nanoce1779_2|672749|organism=Nannochloropsis oceanica|type=polypeptide|length=92bp
MWLAAPCRDQMASLVLLLYISPTNTLTSSRHHHSAPLAASLIQPAYTIIR
RREKDHGVFPLCCCQEGRRRGLGPSSVPRSSGGILRVRRRY*

mRNA from alignment at scaffold_19:563434..564913+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7453 ID=mRNA_7453|Name=jgi.p|Nanoce1779_2|672749|organism=Nannochloropsis oceanica|type=mRNA|length=1480bp|location=Sequence derived from alignment at scaffold_19:563434..564913+ (Nannochloropsis oceanica)
AGGGAAGATTGCTCGGTGTTGGTCTTGGGCGTCGCATATCCCTGTCTCCT
GCTGTGGTTGTGGGTGGATTGGGGAACAGGAAAGAGGCGGGTGAATGTCC
GCCTTGGTGTATGGATAGATGATGCATTGCATTCCGGAAGGACGACAAAG
GGACAAGAAGAAGGGAGGGGGGACGACAAGACAAGCATATTCACGGTGGT
CTCTGAGATGTGGTGGCTGAAATGAGCGTGAGCTTTAGCCGTAGGTGCGA
CCTTTATTCATATTCACATGCCCACGACGAAGACGGACTTGCGCAAGCCG
CATCGCTAGTGCTGGCGGGGGAGGATGACCAGAGAGGACGAAAAAGCAGG
CGAGGAGAAGAGTGAGCGTATGGATTTGGGAGGGAGGCGTGGCTCAAAGC
AGGAGTGTTATGTACTCCCTCGCGTCACATGCACCCCCTCCATGACCACT
CGGACCAATCATCGACAGGCTCATGTGGCTGGCTGCGCCCTGCAGGGACC
AGATGGCATCACTGGTGTTGCTTTTGTATATCTCTCCCACAAACACATTG
ACCTCTTCTCGTCATCATCATAGTGCTCCTCTCGCTGCCTCCCTTATCCA
ACCTGCATACACAATCATCCGCAGGCGTGAGAAGGACCATGGCGTCTTCC
CTCTCTGTTGTTGTCAAGAGGGCAGGCGGCGCGGCCTTGGCCCGTCCTCT
GTCCCACGAAGTTCAGGAGGAATTTTACGCGTTCGGCGGCGGTACTAGGT
GGGTTGTGTGTGGAGTGGAAGGCGGACAGGAAGAAAGGGAAAGCAGGGGA
GGCATGTACTGGGATGTAATTGTACTCAAGAGAAAGTTCGATAACGAGAA
GGGGTGGACTTGAAAAGGGCAGGTGGAGAATGAATCGACTGTCACGATCC
GAACGTACACGACTCACCTCCCCTCTTTCCCCCCCCTTGCCCACATCAGG
CGGTGGTGGCCATCACCCCGGCCTCCCGCAACCATTTAAGCGTACGGCCA
ATGCTGAGGACCGCTATTTGAGGAGCACGAGTTGATTTGGGACGATCGGG
GTGGCGGCGGAGATGTGTCTGGATTTCGACGCGAGCTTTGTGCCCCAAGG
AGAGGTGAGGGAGGGAGGGGGAGGGAAGGGAAAAGCGAGAGCAAAGAGAG
ATAATTTGAGAAGGCTTTTATCTCGTGTTGACCTTCTTGTATGCTTAAAA
CCTGCTCTCTTGTCCGTTTCCTCCCCTTGCATGACCGGTAGGACTGTGCG
ATGGTGGCTAGGCGGCTTCGGCTTCTTCTTCTCTCTGCTCGGCCCTCGTC
TCCCTCACGACCCAGGGGCAGCCAATCCGTGCGTGAACCAAGACTGAGAC
GATGCCAGACCTTGGCCTCTCGTTCATCCAGATGGGAGGGAGTCCGGCGG
CGGAGGAAGAGGAGGCGGAGGAGGAGTAGACGGAGGGAGGAAGGAGAGGG
GGAGGGTGTTTGTGTCTAGGTAGGGAGGGT

Coding sequence (CDS) from alignment at scaffold_19:563434..564913+

>mRNA_7453 ID=mRNA_7453|Name=jgi.p|Nanoce1779_2|672749|organism=Nannochloropsis oceanica|type=CDS|length=276bp|location=Sequence derived from alignment at scaffold_19:563434..564913+ (Nannochloropsis oceanica)
ATGTGGCTGGCTGCGCCCTGCAGGGACCAGATGGCATCACTGGTGTTGCT
TTTGTATATCTCTCCCACAAACACATTGACCTCTTCTCGTCATCATCATA
GTGCTCCTCTCGCTGCCTCCCTTATCCAACCTGCATACACAATCATCCGC
AGGCGTGAGAAGGACCATGGCGTCTTCCCTCTCTGTTGTTGTCAAGAGGG
CAGGCGGCGCGGCCTTGGCCCGTCCTCTGTCCCACGAAGTTCAGGAGGAA
TTTTACGCGTTCGGCGGCGGTACTAG

Synonyms

Publications