jgi.p|Nanoce1779_2|136139, mRNA_7452 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|136139
Unique NamemRNA_7452
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length972
Alignment locationscaffold_19:562126..563735 -

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Properties
Property NameValue
TranscriptId136225
TrackFilteredModels2
ProteinId136139
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:562126..563735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|136139gene_7452Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|136139mRNA_7452-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7452CDS_7452Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7452 ID=mRNA_7452|Name=jgi.p|Nanoce1779_2|136139|organism=Nannochloropsis oceanica|type=mRNA|length=972bp
TGCGGCTTGCGCAAGTCCGTCTTCGTCGTGGGCATGTGAATATGAATAAA
GGTCGCACCTACGGCTAAAGCTCACGCTCATTTCAGCCACCACATCTCAG
AGACCACCGTGAATATGCTTGTCTTGTCGTCCCCCCTCCCTTCTTCTTGT
CCCTTTGTCGTCCTTCCGGAATGCAATGCATCATCTATCCATACACCAAG
GCGGACATTCACCCGCCTCTTTCCTGTTCCCCAATCCACCCACAACCACA
GCAGGAGACAGGGATATGCGACGCCCAAGACCAACACCGAGCAATCTTCC
CTCCTTCCTCCTCCTCCTACCCGTTCTCCTCCTTCCTGCGGCTGCCGCCA
CTGCTGATGAGGCACCCCTGTGCGGCGGCTTCCCTGCCTTCATGTGGGGC
GGCCACGACAGCTACTTTGCGGGCCACTGAGGATTACGCTTTGAGCAGCG
TGGGGCACGACGAACTGGTCGAGAGCATCCAGTCATTGGGGAGCAAGGAG
GCCGCCCCGGAGGTGACCGTCGTCCTAGTGGCCCCTCCCTCCCTCCATGC
CTCCCGCCCTGCCTCCCTCCCTGCCTTACAAGCAGCAGTTCAAGGCGCTC
CTTCTTCCCGGATCGTGCCTTGCTTGACGCGTTCGTCCCTCCTCCCACTC
GGTGACGCGTACGTCATGGCGCAGCATGTGGGGATGGCCGACGTCCTGTC
CTTCCTGGAGAAGGGAGACTTGATGAGCAACAACCACATGGATATCATCG
TCTCCTCCCTCCCTCACTCCCTCCCTCCCCCCGGCCCTTGACACACTCAT
CGCCGAGCTCTCAGCCTCCTTGCAGCGCCTGGCCCCAGACGGCCGCTATC
TCGTAGTGCAGACCACTGAATTTTCCCCTTCTCATGCCGTGGGAGGAGGC
AGGTCCCATCACACGACTCACCGGAAGCTGCAAATCGATCCTGACGATGA
CGGGGTGAGAAAGGAGGGAAGG
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protein sequence of jgi.p|Nanoce1779_2|136139

>mRNA_7452-protein ID=mRNA_7452-protein|Name=jgi.p|Nanoce1779_2|136139|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MQCIIYPYTKADIHPPLSCSPIHPQPQQETGICDAQDQHRAIFPPSSSSY
PFSSFLRLPPLLMRHPCAAASLPSCGAATTATLRATEDYALSSVGHDELV
ESIQSLGSKEAAPEVTVVLVAPPSLHASRPASLPALQAAVQGAPSSRIVP
CLTRSSLLPLGDAYVMAQHVGMADVLSFLEKGDLMSNNHMDIIVSSLPHS
LPPPGP*
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mRNA from alignment at scaffold_19:562126..563735-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7452 ID=mRNA_7452|Name=jgi.p|Nanoce1779_2|136139|organism=Nannochloropsis oceanica|type=mRNA|length=1610bp|location=Sequence derived from alignment at scaffold_19:562126..563735- (Nannochloropsis oceanica)
TGCGGCTTGCGCAAGTCCGTCTTCGTCGTGGGCATGTGAATATGAATAAA
GGTCGCACCTACGGCTAAAGCTCACGCTCATTTCAGCCACCACATCTCAG
AGACCACCGTGAATATGCTTGTCTTGTCGTCCCCCCTCCCTTCTTCTTGT
CCCTTTGTCGTCCTTCCGGAATGCAATGCATCATCTATCCATACACCAAG
GCGGACATTCACCCGCCTCTTTCCTGTTCCCCAATCCACCCACAACCACA
GCAGGAGACAGGGATATGCGACGCCCAAGACCAACACCGAGCAATCTTCC
CTCCTTCCTCCTCCTCCTACCCGTTCTCCTCCTTCCTGCGGCTGCCGCCA
CTGCTGATGAGGCACCCCTGTGCGGCGGCTTCCCTGCCTTCATGTGGGGC
GGCCACGACAGCTACTTTGCGGGCCACTGAGGATTACGCTTTGAGCAGGT
AGGTTCAAAAGAGGAAGCGATGAAGGGATGGACGGACGGACGGATAGACG
GTGGGAAAGGGACGAAATGACGGAGGGAGATTCGGCGCGCCATGCCCGCG
TTATGCAACTCCGCCGCGCGCCACCCCTTGCGCCATTCTCATCGTTATCA
TTCTTTCATATCCCTGCACCCACATAAAATTCATGTCATCATCGTTTCCT
GTCCCTGCACCCAAATCAAATACAGCGTGGGGCACGACGAACTGGTCGAG
AGCATCCAGTCATTGGGGAGCAAGGAGGCCGCCCCGGAGGTGACCGTCGT
CCTAGTGGCCCCTCCCTCCCTCCATGCCTCCCGCCCTGCCTCCCTCCCTG
CCTTACAAGCAGCAGTTCAAGGCGCTCCTTCTTCCCGGATCGTGCCTTGC
TTGACGCGGTAAGATGGGAAGGAGGGAGGGAGGGAGAAAGGGGGAAAAAA
AGAGTGTGTGTAAACGGCACTATGCGCGCTCCTTTCCTTCTAAACAACTC
ATCTCTCCCTCCCTCCCTCCCTCCTTCCTTCCTTCCCTCCCTCTTTCCCT
TCTTCCTCTACAGTTCGTCCCTCCTCCCACTCGGTGACGCGTACGTCATG
GCGCAGCATGTGGGGATGGCCGACGTCCTGTCCTTCCTGGAGAAGGGAGA
CTTGATGAGGTAGGAATGGAGGGAGGGGGGAAGGGAGGGAGGATTATGTT
TGTCATGGACCAGAAAGATGAGAGGAACGACGACTGAAGCGTGCACAGCT
AACTAAGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCAGCAAC
AACCACATGGATATCATCGTCTCCTCCCTCCCTCACTCCCTCCCTCCCCC
CGGCCCTTGACACACTCATCGCCGAGCTCTCAGCCTCCTTGCAGCGCCTG
GCCCCAGACGGCCGCTATCTCGTAGTGCAGGTACGCCCCGCCCTCCCTCC
CTCTCTCCCTTCCTCCCTTCCTTCCGCCCGCCTTTCTGAATCATACCCAT
TAGCAGAAGCATGACGTCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTAGA
CCACTGAATTTTCCCCTTCTCATGCCGTGGGAGGAGGCAGGTCCCATCAC
ACGACTCACCGGAAGCTGCAAATCGATCCTGACGATGACGGGGTGAGAAA
GGAGGGAAGG
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Coding sequence (CDS) from alignment at scaffold_19:562126..563735-

>mRNA_7452 ID=mRNA_7452|Name=jgi.p|Nanoce1779_2|136139|organism=Nannochloropsis oceanica|type=CDS|length=2484bp|location=Sequence derived from alignment at scaffold_19:562126..563735- (Nannochloropsis oceanica)
CAACAACCACATGGATATCATCGTCTCCTCCCTCCCTCACTCCCTCCCTC
CCCCCGGCCCTTGATTCGTCCCTCCTCCCACTCGGTGACGCGTACGTCAT
GGCGCAGCATGTGGGGATGGCCGACGTCCTGTCCTTCCTGGAGAAGGGAG
ACTTGATGAGCGTGGGGCACGACGAACTGGTCGAGAGCATCCAGTCATTG
GGGAGCAAGGAGGCCGCCCCGGAGGTGACCGTCGTCCTAGTGGCCCCTCC
CTCCCTCCATGCCTCCCGCCCTGCCTCCCTCCCTGCCTTACAAGCAGCAG
TTCAAGGCGCTCCTTCTTCCCGGATCGTGCCTTGCTTGACGCGATGCAAT
GCATCATCTATCCATACACCAAGGCGGACATTCACCCGCCTCTTTCCTGT
TCCCCAATCCACCCACAACCACAGCAGGAGACAGGGATATGCGACGCCCA
AGACCAACACCGAGCAATCTTCCCTCCTTCCTCCTCCTCCTACCCGTTCT
CCTCCTTCCTGCGGCTGCCGCCACTGCTGATGAGGCACCCCTGTGCGGCG
GCTTCCCTGCCTTCATGTGGGGCGGCCACGACAGCTACTTTGCGGGCCAC
TGAGGATTACGCTTTGAGCAGCAACAACCACATGGATATCATCGTCTCCT
CCCTCCCTCACTCCCTCCCTCCCCCCGGCCCTTGATTCGTCCCTCCTCCC
ACTCGGTGACGCGTACGTCATGGCGCAGCATGTGGGGATGGCCGACGTCC
TGTCCTTCCTGGAGAAGGGAGACTTGATGAGCGTGGGGCACGACGAACTG
GTCGAGAGCATCCAGTCATTGGGGAGCAAGGAGGCCGCCCCGGAGGTGAC
CGTCGTCCTAGTGGCCCCTCCCTCCCTCCATGCCTCCCGCCCTGCCTCCC
TCCCTGCCTTACAAGCAGCAGTTCAAGGCGCTCCTTCTTCCCGGATCGTG
CCTTGCTTGACGCGATGCAATGCATCATCTATCCATACACCAAGGCGGAC
ATTCACCCGCCTCTTTCCTGTTCCCCAATCCACCCACAACCACAGCAGGA
GACAGGGATATGCGACGCCCAAGACCAACACCGAGCAATCTTCCCTCCTT
CCTCCTCCTCCTACCCGTTCTCCTCCTTCCTGCGGCTGCCGCCACTGCTG
ATGAGGCACCCCTGTGCGGCGGCTTCCCTGCCTTCATGTGGGGCGGCCAC
GACAGCTACTTTGCGGGCCACTGAGGATTACGCTTTGAGCAGCAACAACC
ACATGGATATCATCGTCTCCTCCCTCCCTCACTCCCTCCCTCCCCCCGGC
CCTTGATTCGTCCCTCCTCCCACTCGGTGACGCGTACGTCATGGCGCAGC
ATGTGGGGATGGCCGACGTCCTGTCCTTCCTGGAGAAGGGAGACTTGATG
AGCGTGGGGCACGACGAACTGGTCGAGAGCATCCAGTCATTGGGGAGCAA
GGAGGCCGCCCCGGAGGTGACCGTCGTCCTAGTGGCCCCTCCCTCCCTCC
ATGCCTCCCGCCCTGCCTCCCTCCCTGCCTTACAAGCAGCAGTTCAAGGC
GCTCCTTCTTCCCGGATCGTGCCTTGCTTGACGCGATGCAATGCATCATC
TATCCATACACCAAGGCGGACATTCACCCGCCTCTTTCCTGTTCCCCAAT
CCACCCACAACCACAGCAGGAGACAGGGATATGCGACGCCCAAGACCAAC
ACCGAGCAATCTTCCCTCCTTCCTCCTCCTCCTACCCGTTCTCCTCCTTC
CTGCGGCTGCCGCCACTGCTGATGAGGCACCCCTGTGCGGCGGCTTCCCT
GCCTTCATGTGGGGCGGCCACGACAGCTACTTTGCGGGCCACTGAGGATT
ACGCTTTGAGCAGCAACAACCACATGGATATCATCGTCTCCTCCCTCCCT
CACTCCCTCCCTCCCCCCGGCCCTTGATTCGTCCCTCCTCCCACTCGGTG
ACGCGTACGTCATGGCGCAGCATGTGGGGATGGCCGACGTCCTGTCCTTC
CTGGAGAAGGGAGACTTGATGAGCGTGGGGCACGACGAACTGGTCGAGAG
CATCCAGTCATTGGGGAGCAAGGAGGCCGCCCCGGAGGTGACCGTCGTCC
TAGTGGCCCCTCCCTCCCTCCATGCCTCCCGCCCTGCCTCCCTCCCTGCC
TTACAAGCAGCAGTTCAAGGCGCTCCTTCTTCCCGGATCGTGCCTTGCTT
GACGCGATGCAATGCATCATCTATCCATACACCAAGGCGGACATTCACCC
GCCTCTTTCCTGTTCCCCAATCCACCCACAACCACAGCAGGAGACAGGGA
TATGCGACGCCCAAGACCAACACCGAGCAATCTTCCCTCCTTCCTCCTCC
TCCTACCCGTTCTCCTCCTTCCTGCGGCTGCCGCCACTGCTGATGAGGCA
CCCCTGTGCGGCGGCTTCCCTGCCTTCATGTGGGGCGGCCACGACAGCTA
CTTTGCGGGCCACTGAGGATTACGCTTTGAGCAG
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Synonyms
Publications