jgi.p|Nanoce1779_2|136291, mRNA_7451 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|136291
Unique NamemRNA_7451
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1052
Alignment locationscaffold_19:560585..561636 +

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Properties
Property NameValue
TranscriptId136377
TrackFilteredModels2
ProteinId136291
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:560585..561636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|136291gene_7451Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|136291mRNA_7451-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7451CDS_7451Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7451 ID=mRNA_7451|Name=jgi.p|Nanoce1779_2|136291|organism=Nannochloropsis oceanica|type=mRNA|length=1052bp
GGGAATAAGAGACTTCATGTTTAAAAAAAGAGTACGAGAGCCCATTCTCG
ACGACTAACAAAACAGACAATAGACAGGGCCAGCACCAGCAGGGGAAAAG
GCCGCTTGGGCGTCTGTAACCATGACAAAAAAGTTCATGTATATGCCTCG
AAACTTAACAATGAGTGGGCATACGCGCATTGATTTGCTCCCTTTCCTTT
TTTTTCGCCTCTCTTTTTTCTTTGACTTCTTGTTTTGGCTCTCCTGCCTC
TGCTTCTTCAGTGTGTTTTCTTTCTGGACCGGGTTTGGAGGAGCGCAAGT
GAAGGGGGCCTCACTGTGATCGTCGTCATCACGCGATGGACTAGGACGAT
GAGGACACGGCCCGTGATGCAATAAATGCATTCTGCCAAAGAAACAACGA
ATCAAGGCAATGGGGCAGTTTTGTTGACCGAAGACTCGCCCTCCCTCCCT
CCCTCCCTCCCTACCCCTTCTTCTCCTCTCTTTTTGTACTCATCGCAATC
GTCCGTCCTCCACACAATCTCTTCCTCCCCCTCCCTTTTCCCACACACTG
TATCTCACTTCCTATTCTATGTCGTTTATTTGGCTGGCTCCCTTCTTTCA
TTTGATTTTCGACTTTTCTCCCTTCTCCTCCTCTCTTCCTCCCTACCTCC
CTCCCTCCCTCCCGCCCTCCCTCTCTGCCATCCCAGCATAGAACACCACC
AATACATACACCCTACAATCCATAACCATTGCCTCTTCCTTCCCTCCTTC
CTTACTATCCTCTCTCCCCCTCTTGTCTCGTCGCCTCTCAAGACTCCTTG
CCTTCCCTCCCTCCCTCTCTCCTTCCCTCCCTCCCTCTCCGTCCTGTCCC
GTCGCCTTCTAGAACTCCTTGCCTTCCGGTATCTTCCCGTGGATGAACGT
CGACGGACCCTGAAAAAGATTGAGGGAGGGGAGAGGGAAGGAGGGAGGGA
GGGCGGGAGGGGAAAAAGTGTGGACACGAATGAGTAAGAGAAAATGCGTG
GCATGTCAGGGATCGTTCATTTGGGGAGTGAAAGAGAGAGGAAGGACATC
CC
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protein sequence of jgi.p|Nanoce1779_2|136291

>mRNA_7451-protein ID=mRNA_7451-protein|Name=jgi.p|Nanoce1779_2|136291|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MHSAKETTNQGNGAVLLTEDSPSLPPSLPTPSSPLFLYSSQSSVLHTISS
SPSLFPHTVSHFLFYVVYLAGSLLSFDFRLFSLLLLSSSLPPSLPPALPL
CHPSIEHHQYIHPTIHNHCLFLPSFLTILSPPLVSSPLKTPCLPSLPLSF
PPSLSVLSRRLLELLAFRYLPVDERRRTLKKIEGGEREGGREGGRGKSVD
TNE*
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mRNA from alignment at scaffold_19:560585..561636+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7451 ID=mRNA_7451|Name=jgi.p|Nanoce1779_2|136291|organism=Nannochloropsis oceanica|type=mRNA|length=1052bp|location=Sequence derived from alignment at scaffold_19:560585..561636+ (Nannochloropsis oceanica)
GGGAATAAGAGACTTCATGTTTAAAAAAAGAGTACGAGAGCCCATTCTCG
ACGACTAACAAAACAGACAATAGACAGGGCCAGCACCAGCAGGGGAAAAG
GCCGCTTGGGCGTCTGTAACCATGACAAAAAAGTTCATGTATATGCCTCG
AAACTTAACAATGAGTGGGCATACGCGCATTGATTTGCTCCCTTTCCTTT
TTTTTCGCCTCTCTTTTTTCTTTGACTTCTTGTTTTGGCTCTCCTGCCTC
TGCTTCTTCAGTGTGTTTTCTTTCTGGACCGGGTTTGGAGGAGCGCAAGT
GAAGGGGGCCTCACTGTGATCGTCGTCATCACGCGATGGACTAGGACGAT
GAGGACACGGCCCGTGATGCAATAAATGCATTCTGCCAAAGAAACAACGA
ATCAAGGCAATGGGGCAGTTTTGTTGACCGAAGACTCGCCCTCCCTCCCT
CCCTCCCTCCCTACCCCTTCTTCTCCTCTCTTTTTGTACTCATCGCAATC
GTCCGTCCTCCACACAATCTCTTCCTCCCCCTCCCTTTTCCCACACACTG
TATCTCACTTCCTATTCTATGTCGTTTATTTGGCTGGCTCCCTTCTTTCA
TTTGATTTTCGACTTTTCTCCCTTCTCCTCCTCTCTTCCTCCCTACCTCC
CTCCCTCCCTCCCGCCCTCCCTCTCTGCCATCCCAGCATAGAACACCACC
AATACATACACCCTACAATCCATAACCATTGCCTCTTCCTTCCCTCCTTC
CTTACTATCCTCTCTCCCCCTCTTGTCTCGTCGCCTCTCAAGACTCCTTG
CCTTCCCTCCCTCCCTCTCTCCTTCCCTCCCTCCCTCTCCGTCCTGTCCC
GTCGCCTTCTAGAACTCCTTGCCTTCCGGTATCTTCCCGTGGATGAACGT
CGACGGACCCTGAAAAAGATTGAGGGAGGGGAGAGGGAAGGAGGGAGGGA
GGGCGGGAGGGGAAAAAGTGTGGACACGAATGAGTAAGAGAAAATGCGTG
GCATGTCAGGGATCGTTCATTTGGGGAGTGAAAGAGAGAGGAAGGACATC
CC
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Coding sequence (CDS) from alignment at scaffold_19:560585..561636+

>mRNA_7451 ID=mRNA_7451|Name=jgi.p|Nanoce1779_2|136291|organism=Nannochloropsis oceanica|type=CDS|length=612bp|location=Sequence derived from alignment at scaffold_19:560585..561636+ (Nannochloropsis oceanica)
ATGCATTCTGCCAAAGAAACAACGAATCAAGGCAATGGGGCAGTTTTGTT
GACCGAAGACTCGCCCTCCCTCCCTCCCTCCCTCCCTACCCCTTCTTCTC
CTCTCTTTTTGTACTCATCGCAATCGTCCGTCCTCCACACAATCTCTTCC
TCCCCCTCCCTTTTCCCACACACTGTATCTCACTTCCTATTCTATGTCGT
TTATTTGGCTGGCTCCCTTCTTTCATTTGATTTTCGACTTTTCTCCCTTC
TCCTCCTCTCTTCCTCCCTACCTCCCTCCCTCCCTCCCGCCCTCCCTCTC
TGCCATCCCAGCATAGAACACCACCAATACATACACCCTACAATCCATAA
CCATTGCCTCTTCCTTCCCTCCTTCCTTACTATCCTCTCTCCCCCTCTTG
TCTCGTCGCCTCTCAAGACTCCTTGCCTTCCCTCCCTCCCTCTCTCCTTC
CCTCCCTCCCTCTCCGTCCTGTCCCGTCGCCTTCTAGAACTCCTTGCCTT
CCGGTATCTTCCCGTGGATGAACGTCGACGGACCCTGAAAAAGATTGAGG
GAGGGGAGAGGGAAGGAGGGAGGGAGGGCGGGAGGGGAAAAAGTGTGGAC
ACGAATGAGTAA
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Synonyms
Publications