jgi.p|Nanoce1779_2|652441, mRNA_7449 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|652441
Unique NamemRNA_7449
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1261
Alignment locationscaffold_19:553330..554590 -

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Properties
Property NameValue
TranscriptId652527
TrackFilteredModels2
ProteinId652441
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:553330..554590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|652441gene_7449Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|652441mRNA_7449-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7449CDS_7449Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7449 ID=mRNA_7449|Name=jgi.p|Nanoce1779_2|652441|organism=Nannochloropsis oceanica|type=mRNA|length=1261bp
ATGATTAAGCCTATTCGGTGCCTTCTCCCCTTCAAGGTGCTCCTGCTCGT
CGCCCTCTCCTCCGCGCAAGACGCAGCCTACACGCAAGATAGCGATGTAG
GGAGCGCTCTTCTTCAATCCACATTATCCACGTCGCCTATTATTCTGACG
TCTTTTACTCGCCCGCTCAATGCCAACGCCGACAAACAAGGCTTTCTCGG
ACCCAGCGGTGGCTGGTACGAAAATGGTCCTGGCAGCAATTTTCATAGCG
ATTACCCTTATCCTCGCGATCCTTATCTGGCCGACTCTCAATTTTGGCCG
GACTATGGTTGGGACCAACGACATAATTTCCCTTACATCGGGGTGGGGCA
TAAGAGCGTAGAGGAAGTGGAGAAGAGCACCGGCGGCTTGACACTCGTAG
AGGTGAAGACGGAGGCCGGGATGGCCAAGATAGGGACAGGGCTGGATAAG
GAAGGCCCTAGCAACAGCAAAAAACACAAGAAGGGCGAGGTCAAAAAAGT
GGCGACTGCGTCAGAGGCATTGACAGAAGTGGTGGAGCAAGAGAAGGAGG
GGAGTGACCTCTACGATACAGAGCAAGACAGCACGACCAAGCCGATGAAT
GAGGGAGACACAGTCTCAGAGAAGGTAAAGGTAGATGTAAGAAGAGGTAT
GGATGAAGAATCTTCAACGATGGCTAGAAGTGAGCGAGAGGGTGAAGATC
TAAAAGTGGATGCGAACGGCGTGGTGTCAGCGACTGACTTTATACCCGAT
GGCCACAACGACAAGGTGCAGGTTGATATTGGAGAAGTGAAAGAAGGAGA
AGGTATGGCTGTCCCCATCATACTGGCTGATAAGGACAAGCCATTTAGTG
GACAAGGTGGAGCCGTAAAGATAGTGACGACTCCAATCGAAGAATTAAAA
GCCAAAGGCGCAGGTCAGAGCGCTGTGGTTGTTGAAAAGCAATATTACAA
CGGGGCATATGGTGACTCCTTCTACGGCAATGGATATTTCAGTGCATACT
GGCAAAAAGGGCGCAAGGGTGGGGCCATCTCCTTGGGTGGAGACTGGGGA
GGTGGGTCAGGGTATGCGCCGTATTATGGATACGGGGGTGGACCGGGATA
TGATCAGTATGGGGGACCGGGTTATAATTATCAGTATGGAGGACCGGGTT
ATGGTTACTATGGAGGAGGATGTTGCCGTCGTTTGCGTGGATCTTTACAT
CGAGCTTGAGGGGCGGGGTAATATCATGTAGGAAGAAAAGAGAGTAAGAA
ACCAATCGAAG
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protein sequence of jgi.p|Nanoce1779_2|652441

>mRNA_7449-protein ID=mRNA_7449-protein|Name=jgi.p|Nanoce1779_2|652441|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MIKPIRCLLPFKVLLLVALSSAQDAAYTQDSDVGSALLQSTLSTSPIILT
SFTRPLNANADKQGFLGPSGGWYENGPGSNFHSDYPYPRDPYLADSQFWP
DYGWDQRHNFPYIGVGHKSVEEVEKSTGGLTLVEVKTEAGMAKIGTGLDK
EGPSNSKKHKKGEVKKVATASEALTEVVEQEKEGSDLYDTEQDSTTKPMN
EGDTVSEKVKVDVRRGMDEESSTMARSEREGEDLKVDANGVVSATDFIPD
GHNDKVQVDIGEVKEGEGMAVPIILADKDKPFSGQGGAVKIVTTPIEELK
AKGAGQSAVVVEKQYYNGAYGDSFYGNGYFSAYWQKGRKGGAISLGGDWG
GGSGYAPYYGYGGGPGYDQYGGPGYNYQYGGPGYGYYGGGCCRRLRGSLH
RA*
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mRNA from alignment at scaffold_19:553330..554590-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7449 ID=mRNA_7449|Name=jgi.p|Nanoce1779_2|652441|organism=Nannochloropsis oceanica|type=mRNA|length=1261bp|location=Sequence derived from alignment at scaffold_19:553330..554590- (Nannochloropsis oceanica)
ATGATTAAGCCTATTCGGTGCCTTCTCCCCTTCAAGGTGCTCCTGCTCGT
CGCCCTCTCCTCCGCGCAAGACGCAGCCTACACGCAAGATAGCGATGTAG
GGAGCGCTCTTCTTCAATCCACATTATCCACGTCGCCTATTATTCTGACG
TCTTTTACTCGCCCGCTCAATGCCAACGCCGACAAACAAGGCTTTCTCGG
ACCCAGCGGTGGCTGGTACGAAAATGGTCCTGGCAGCAATTTTCATAGCG
ATTACCCTTATCCTCGCGATCCTTATCTGGCCGACTCTCAATTTTGGCCG
GACTATGGTTGGGACCAACGACATAATTTCCCTTACATCGGGGTGGGGCA
TAAGAGCGTAGAGGAAGTGGAGAAGAGCACCGGCGGCTTGACACTCGTAG
AGGTGAAGACGGAGGCCGGGATGGCCAAGATAGGGACAGGGCTGGATAAG
GAAGGCCCTAGCAACAGCAAAAAACACAAGAAGGGCGAGGTCAAAAAAGT
GGCGACTGCGTCAGAGGCATTGACAGAAGTGGTGGAGCAAGAGAAGGAGG
GGAGTGACCTCTACGATACAGAGCAAGACAGCACGACCAAGCCGATGAAT
GAGGGAGACACAGTCTCAGAGAAGGTAAAGGTAGATGTAAGAAGAGGTAT
GGATGAAGAATCTTCAACGATGGCTAGAAGTGAGCGAGAGGGTGAAGATC
TAAAAGTGGATGCGAACGGCGTGGTGTCAGCGACTGACTTTATACCCGAT
GGCCACAACGACAAGGTGCAGGTTGATATTGGAGAAGTGAAAGAAGGAGA
AGGTATGGCTGTCCCCATCATACTGGCTGATAAGGACAAGCCATTTAGTG
GACAAGGTGGAGCCGTAAAGATAGTGACGACTCCAATCGAAGAATTAAAA
GCCAAAGGCGCAGGTCAGAGCGCTGTGGTTGTTGAAAAGCAATATTACAA
CGGGGCATATGGTGACTCCTTCTACGGCAATGGATATTTCAGTGCATACT
GGCAAAAAGGGCGCAAGGGTGGGGCCATCTCCTTGGGTGGAGACTGGGGA
GGTGGGTCAGGGTATGCGCCGTATTATGGATACGGGGGTGGACCGGGATA
TGATCAGTATGGGGGACCGGGTTATAATTATCAGTATGGAGGACCGGGTT
ATGGTTACTATGGAGGAGGATGTTGCCGTCGTTTGCGTGGATCTTTACAT
CGAGCTTGAGGGGCGGGGTAATATCATGTAGGAAGAAAAGAGAGTAAGAA
ACCAATCGAAG
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Coding sequence (CDS) from alignment at scaffold_19:553330..554590-

>mRNA_7449 ID=mRNA_7449|Name=jgi.p|Nanoce1779_2|652441|organism=Nannochloropsis oceanica|type=CDS|length=1209bp|location=Sequence derived from alignment at scaffold_19:553330..554590- (Nannochloropsis oceanica)
ATGATTAAGCCTATTCGGTGCCTTCTCCCCTTCAAGGTGCTCCTGCTCGT
CGCCCTCTCCTCCGCGCAAGACGCAGCCTACACGCAAGATAGCGATGTAG
GGAGCGCTCTTCTTCAATCCACATTATCCACGTCGCCTATTATTCTGACG
TCTTTTACTCGCCCGCTCAATGCCAACGCCGACAAACAAGGCTTTCTCGG
ACCCAGCGGTGGCTGGTACGAAAATGGTCCTGGCAGCAATTTTCATAGCG
ATTACCCTTATCCTCGCGATCCTTATCTGGCCGACTCTCAATTTTGGCCG
GACTATGGTTGGGACCAACGACATAATTTCCCTTACATCGGGGTGGGGCA
TAAGAGCGTAGAGGAAGTGGAGAAGAGCACCGGCGGCTTGACACTCGTAG
AGGTGAAGACGGAGGCCGGGATGGCCAAGATAGGGACAGGGCTGGATAAG
GAAGGCCCTAGCAACAGCAAAAAACACAAGAAGGGCGAGGTCAAAAAAGT
GGCGACTGCGTCAGAGGCATTGACAGAAGTGGTGGAGCAAGAGAAGGAGG
GGAGTGACCTCTACGATACAGAGCAAGACAGCACGACCAAGCCGATGAAT
GAGGGAGACACAGTCTCAGAGAAGGTAAAGGTAGATGTAAGAAGAGGTAT
GGATGAAGAATCTTCAACGATGGCTAGAAGTGAGCGAGAGGGTGAAGATC
TAAAAGTGGATGCGAACGGCGTGGTGTCAGCGACTGACTTTATACCCGAT
GGCCACAACGACAAGGTGCAGGTTGATATTGGAGAAGTGAAAGAAGGAGA
AGGTATGGCTGTCCCCATCATACTGGCTGATAAGGACAAGCCATTTAGTG
GACAAGGTGGAGCCGTAAAGATAGTGACGACTCCAATCGAAGAATTAAAA
GCCAAAGGCGCAGGTCAGAGCGCTGTGGTTGTTGAAAAGCAATATTACAA
CGGGGCATATGGTGACTCCTTCTACGGCAATGGATATTTCAGTGCATACT
GGCAAAAAGGGCGCAAGGGTGGGGCCATCTCCTTGGGTGGAGACTGGGGA
GGTGGGTCAGGGTATGCGCCGTATTATGGATACGGGGGTGGACCGGGATA
TGATCAGTATGGGGGACCGGGTTATAATTATCAGTATGGAGGACCGGGTT
ATGGTTACTATGGAGGAGGATGTTGCCGTCGTTTGCGTGGATCTTTACAT
CGAGCTTGA
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Synonyms
Publications