jgi.p|Nanoce1779_2|598782, mRNA_7442 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598782
Unique Name	mRNA_7442
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	823
Alignment location	scaffold_19:529887..530952 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	598868
Track	FilteredModels2
ProteinId	598782

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:529887..530952 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598782	gene_7442	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598782	mRNA_7442-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7442	CDS_7442	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:529887..530952-
coding sequence from alignment at scaffold_19:529887..530952-

mRNA sequence

>mRNA_7442 ID=mRNA_7442|Name=jgi.p|Nanoce1779_2|598782|organism=Nannochloropsis oceanica|type=mRNA|length=823bp
ACAGGTTCATGCAAAAGGTTTTTCTTACCCAACTCGCCCACGCCACCCTC
CACCCTCCCTCTTCCTCTTCTGTCTCCGCCTGTTCTGCCTCTTCGGTCGC
CTCCTCTTCCTCCTCATCCTCCTTTGTTTATGCCTGGCAAGGCAAGGAAA
TCCCCGGAAGGGTGTGGGTGCAGGTAAGAAGAGCAAGGGAGAGAAATAGA
GGATAGGAAAACAAGGACAGGGGGCGTATGAAAGCATTGCCAATAAGTGC
ATGTGTTACCAGCTTGTCATGCGAAGCCTCCTTCTCTTCATCGTGCTTTC
TCCCCTTCGATGCAATTCTGAGTCACACCTCATCCAGCAACTCTCCGGCC
CAAATTTCCCTTTTTCGCCTCCCTCATCCTCCAAAAGATGGTCATCGATG
ACACCTAATCAAGCTACAGCCTGCCAATCGACGGCAGTGCTCTTCTTCTC
ATCCCCTCCACCCTCCTCTCCTCCACTTCCTTCTCCCGTACACCATATCT
CCTCGTTCCTCCTCCCTCCGCTCTCGTCTTCTTTTCCTATTCCCCCCCTT
CCTACAGGGGACGGTAGTCGATGACACTCAGCCAGGCCGCCTCTTGCTTG
ACGACGGCAGTGCTGTCATGTGGGTGCTTCTCAAAGATGTGGTCATGCCC
CTGGAGGCCAAGAAGGGCCAATACATTCTCGTCATCGGCCCGCCCTCATG
AGGAAACCCACAGCCCGTCCCAACAACAGAGGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGC

protein sequence of jgi.p|Nanoce1779_2|598782

>mRNA_7442-protein ID=mRNA_7442-protein|Name=jgi.p|Nanoce1779_2|598782|organism=Nannochloropsis oceanica|type=polypeptide|length=108bp
MCYQLVMRSLLLFIVLSPLRCNSESHLIQQLSGPNFPFSPPSSSKRWSSM
TPNQATACQSTAVLFFSSPPPSSPPLPSPVHHISSFLLPPLSSSFPIPPL
PTGDGSR*

mRNA from alignment at scaffold_19:529887..530952-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7442 ID=mRNA_7442|Name=jgi.p|Nanoce1779_2|598782|organism=Nannochloropsis oceanica|type=mRNA|length=1066bp|location=Sequence derived from alignment at scaffold_19:529887..530952- (Nannochloropsis oceanica)
ACAGGTTCATGCAAAAGGTTTTTCTTACCCAACTCGCCCACGCCACCCTC
CACCCTCCCTCTTCCTCTTCTGTCTCCGCCTGTTCTGCCTCTTCGGTCGC
CTCCTCTTCCTCCTCATCCTCCTTTGTTTATGCCTGGCAAGGCAAGGAAA
TCCCCGGAAGGGTGTGGGTGCAGGTAAGAAGAGCAAGGGAGAGAAATAGA
GGATAGGAAAACAAGGACAGGGGGCGTATGAAAGCATTGCCAATAAGTGC
ATGTGTTACCAGCTTGTCATGCGAAGCCTCCTTCTCTTCATCGTGCTTTC
TCCCCTTCGATGCAATTCTGAGTCACACCTCATCCAGCAACTCTCCGGCC
CAAATTTCCCTTTTTCGCCTCCCTCATCCTCCAAAAGATGGTCATCGATG
ACACCTAATCAAGCTACAGCCTGCCAATCGACGGCAGTGCTCTTCTTCTC
ATCCCCTCCACCCTCCTCTCCTCCACTTCCTTCTCCCGTACACCATATCT
CCTCGTTCCTCCTCCCTCCGCTCTCGTCTTCTTTTCCTATTCCCCCCCTT
CCTACAGGGGACGGTAGTCGATGACACTCAGCCAGGCCGCCTCTTGCTTG
ACGACGGCAGTGCTGTCATGTGGGTGCTTCTCAAAGATGTGGTCATGCCC
CTGGAGGCCAAGAAGGGTGAGAGGGGGTGGAGGGAGAGAGAGAGGGAGGG
AGGGTGGGAATGAAGGAGGGTTGTCATGCTCAGCGATAGTGTAATTGTGT
TGGAGCCTTCTTTGCGATGTTGTTTCTGTGGTGCATGCGTATGAGTACCT
CGTTGACCTGAATTGCACTTATTGGACAAGGGAAGAGGGGAAATACCGCG
AATACCAACTGATCGACTGTGCCCTGCCCTCCCTCCCTCCCTCTCCCTCC
CTCCCCAAGGCCAATACATTCTCGTCATCGGCCCGCCCTCATGAGGAAAC
CCACAGCCCGTCCCAACAACAGAGGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGC

Coding sequence (CDS) from alignment at scaffold_19:529887..530952-

>mRNA_7442 ID=mRNA_7442|Name=jgi.p|Nanoce1779_2|598782|organism=Nannochloropsis oceanica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_19:529887..530952- (Nannochloropsis oceanica)
ATGTGTTACCAGCTTGTCATGCGAAGCCTCCTTCTCTTCATCGTGCTTTC
TCCCCTTCGATGCAATTCTGAGTCACACCTCATCCAGCAACTCTCCGGCC
CAAATTTCCCTTTTTCGCCTCCCTCATCCTCCAAAAGATGGTCATCGATG
ACACCTAATCAAGCTACAGCCTGCCAATCGACGGCAGTGCTCTTCTTCTC
ATCCCCTCCACCCTCCTCTCCTCCACTTCCTTCTCCCGTACACCATATCT
CCTCGTTCCTCCTCCCTCCGCTCTCGTCTTCTTTTCCTATTCCCCCCCTT
CCTACAGGGGACGGTAGTCGATGA

Synonyms

Publications