jgi.p|Nanoce1779_2|598778, mRNA_7441 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598778
Unique Name	mRNA_7441
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	919
Alignment location	scaffold_19:528616..529873 +

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Properties


Property Name	Value
TranscriptId	598864
Track	FilteredModels2
ProteinId	598778

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:528616..529873 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598778	gene_7441	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598778	mRNA_7441-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7441	CDS_7441	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:528616..529873+
coding sequence from alignment at scaffold_19:528616..529873+

mRNA sequence

>mRNA_7441 ID=mRNA_7441|Name=jgi.p|Nanoce1779_2|598778|organism=Nannochloropsis oceanica|type=mRNA|length=919bp
TTGGGGGAGGGTTTGACGGTGATGGCAAGCGGGGGGGGGCTTGATCATGA
CATGAAGGAAGGGAGCGAGGGAGCGAGGGAGCGAGGGAGAGACGCCTGGA
CTGATGAGAGTGTTGGGCTGCACACGAGAGCGTGAGAGTGGGAATGAGTC
GCTTCAACCTTTCGGTGGAGGATACCACTCAGGTAACATGTTGCTTGTCT
GCTCTCCCTTCCTCCCTCCCTTCTTCCCTCACTTTGTCGACCTCGTCAGT
CTTGTTCTCCAAAACTCTCCTCCTCCTTCCCTTTGTCCGAGTCCTCCCTT
CTACTTAGTTGGCATTTGGGGTGGGCTTGGTCGGCCAGCCAGCAGCGAGA
GAGGAAGGGAAGGAGGACGGGTTCGAGGAAGGGACAAGCATAAAGAAGAA
GACCAGGCGCTGACGGAAGGGAAGGGAGAAGGGAGGGTGGGAGGGAGCAG
TCCGCTGCTTCCTGGTGTTTTTGCTTGGGGCAGTGCGTGGGTGCCCGACA
CAAAAAAGTGCACGCCAGAAGACGAGGAGGCAGTCGAAGCACACACATCC
ACTTACTCAACACGTGAATACAAGAGGCACAAGATAAAGAAGAACAAGCT
TTCGCCATTCAATTTTCCTGTGTATTTGCTTTGTCATTCATCAATCACAA
GTATGTTTATCGTTCAGTCATATTTTCTACTATATTCTACTATATTTCTT
CATTCATTTTATGTATTTATTTTTACTATATATTTATTTACAGTTCGCTT
ACTTTTTCACTCATTCATCCACTTAATTTATTTCTTCGTTTCATTTATGT
GTTTATTCTTCTTCGCCCCGTCTTCCGTCTTCCATGCTTGCAGCACTTCC
AGCAGCCACATTCCCTCCCTATGTGGGCCGGCATCGGATAAATCGATAGT
TTGATGAGCCATGAGCACT

protein sequence of jgi.p|Nanoce1779_2|598778

>mRNA_7441-protein ID=mRNA_7441-protein|Name=jgi.p|Nanoce1779_2|598778|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MRVLGCTRERESGNESLQPFGGGYHSGNMLLVCSPFLPPFFPHFVDLVSL
VLQNSPPPSLCPSPPFYLVGIWGGLGRPASSERGREGGRVRGRDKHKEED
QALTEGKGEGRVGGSSPLLPGVFAWGSAWVPDTKKCTPEDEEAVEAHTST
YSTREYKRHKIKKNKLSPFNFPVYLLCHSSITSMFIVQSYFLLYSTIFLH
SFYVFIFTIYLFTVRLLFHSFIHLIYFFVSFMCLFFFAPSSVFHACSTSS
SHIPSLCGPASDKSIV*

mRNA from alignment at scaffold_19:528616..529873+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7441 ID=mRNA_7441|Name=jgi.p|Nanoce1779_2|598778|organism=Nannochloropsis oceanica|type=mRNA|length=1258bp|location=Sequence derived from alignment at scaffold_19:528616..529873+ (Nannochloropsis oceanica)
TTGGGGGAGGGTTTGACGGTGATGGCAAGCGGGGGGGGGCTTGATCATGA
CATGAAGGAAGGGAGCGAGGGAGCGAGGGAGCGAGGGAGAGACGCCTGGA
CTGATGAGAGTGTTGGGCTGCACACGAGAGCGTGAGAGTGGGAATGAGTC
GCTTCAACCTTTCGGTGGAGGATACCACTCAGGTAACATGTTGCTTGTCT
GCTCTCCCTTCCTCCCTCCCTTCTTCCCTCACTTTGTCGACCTCGTCAGT
CTTGTTCTCCAAAACTCTCCTCCTCCTTCCCTTTGTCCGAGTCCTCCCTT
CTACTTAGTTGGCATTTGGGGTGGGCTTGGTCGGCCAGCCAGCAGCGAGA
GAGGAAGGGAAGGAGGACGGGTTCGAGGAAGGGACAAGCATAAAGAAGAA
GACCAGGCGCTGACGGAAGGGAAGGGAGAAGGGAGGGTGGGAGGGAGCAG
TCCGCTGCTTCCTGGTGTTTTTGCTTGGGGCAGTGCGTGGGTGCCCGGTT
AGTGGCAGGGTGGGTGAGGGAGAGGAGGGGGCCTACCCCTCCTCCTTCTT
CTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCCTCTTTCGTCACTTCTTTT
GGTTCTTGTTCTTGTTGCGGGTGTTGTGGTTCTTGTCGGTGGGCTTCCTC
TTGTGCTGTCTCCAAATCCTTCGTATCAACTTATCACGTGCCCTTTTTTT
GCATTTCATCAATAAACTGCTTCGCAAACATCCAGAGAGGGATGAAAAGA
AAAATGATCGCGAAACGTTCTTCCGGGTGTCATAATATCCGCGTTTTATT
TCATTTCCTCTCTCTTTCCATGCATGTCTTGCACAGACACAAAAAAGTGC
ACGCCAGAAGACGAGGAGGCAGTCGAAGCACACACATCCACTTACTCAAC
ACGTGAATACAAGAGGCACAAGATAAAGAAGAACAAGCTTTCGCCATTCA
ATTTTCCTGTGTATTTGCTTTGTCATTCATCAATCACAAGTATGTTTATC
GTTCAGTCATATTTTCTACTATATTCTACTATATTTCTTCATTCATTTTA
TGTATTTATTTTTACTATATATTTATTTACAGTTCGCTTACTTTTTCACT
CATTCATCCACTTAATTTATTTCTTCGTTTCATTTATGTGTTTATTCTTC
TTCGCCCCGTCTTCCGTCTTCCATGCTTGCAGCACTTCCAGCAGCCACAT
TCCCTCCCTATGTGGGCCGGCATCGGATAAATCGATAGTTTGATGAGCCA
TGAGCACT

Coding sequence (CDS) from alignment at scaffold_19:528616..529873+

>mRNA_7441 ID=mRNA_7441|Name=jgi.p|Nanoce1779_2|598778|organism=Nannochloropsis oceanica|type=CDS|length=1602bp|location=Sequence derived from alignment at scaffold_19:528616..529873+ (Nannochloropsis oceanica)
ATGAGAGTGTTGGGCTGCACACGAGAGCGTGAGAGTGGGAATGAGTCGCT
TCAACCTTTCGGTGGAGGATACCACTCAGGTAACATGTTGCTTGTCTGCT
CTCCCTTCCTCCCTCCCTTCTTCCCTCACTTTGTCGACCTCGTCAGTCTT
GTTCTCCAAAACTCTCCTCCTCCTTCCCTTTGTCCGAGTCCTCCCTTCTA
CTTAGTTGGCATTTGGGGTGGGCTTGGTCGGCCAGCCAGCAGCGAGAGAG
GAAGGGAAGGAGGACGGGTTCGAGGAAGGGACAAGCATAAAGAAGAAGAC
CAGGCGCTGACGGAAGGGAAGGGAGAAGGGAGGGTGGGAGGGAGCAGTCC
GCTGCTTCCTGGTGTTTTTGCTTGGGGCAGTGCGTGGGTGCCCGACACAA
AAAAGTGCACGCCAGAAGACGAGGAGGCAGTCGAAGCACACACATCCACT
TACTCAACACGTGAATACAAGAGGCACAAGATAAAGAAGAACAAGCTTTC
GCCATTCAATTTTCCTGTGTATTTGCTTTGTCATTCATCAATCACAAGTA
TGTTTATCGTTCAGTCATATTTTCTACTATATTCTACTATATTTCTTCAT
TCATTTTATGTATTTATTTTTACTATATATTTATTTACAGTTCGCTTACT
TTTTCACTCATTCATCCACTTAATTTATTTCTTCGTTTCATTTATGTGTT
TATTCTTCTTCGCCCCGTCTTCCGTCTTCCATGCTTGCAGCACTTCCAGC
AGCCACATTCCCTCCCTATGTGGGCCGGCATCGGATAAATCGATAGTTTG
AATGAGAGTGTTGGGCTGCACACGAGAGCGTGAGAGTGGGAATGAGTCGC
TTCAACCTTTCGGTGGAGGATACCACTCAGGTAACATGTTGCTTGTCTGC
TCTCCCTTCCTCCCTCCCTTCTTCCCTCACTTTGTCGACCTCGTCAGTCT
TGTTCTCCAAAACTCTCCTCCTCCTTCCCTTTGTCCGAGTCCTCCCTTCT
ACTTAGTTGGCATTTGGGGTGGGCTTGGTCGGCCAGCCAGCAGCGAGAGA
GGAAGGGAAGGAGGACGGGTTCGAGGAAGGGACAAGCATAAAGAAGAAGA
CCAGGCGCTGACGGAAGGGAAGGGAGAAGGGAGGGTGGGAGGGAGCAGTC
CGCTGCTTCCTGGTGTTTTTGCTTGGGGCAGTGCGTGGGTGCCCGACACA
AAAAAGTGCACGCCAGAAGACGAGGAGGCAGTCGAAGCACACACATCCAC
TTACTCAACACGTGAATACAAGAGGCACAAGATAAAGAAGAACAAGCTTT
CGCCATTCAATTTTCCTGTGTATTTGCTTTGTCATTCATCAATCACAAGT
ATGTTTATCGTTCAGTCATATTTTCTACTATATTCTACTATATTTCTTCA
TTCATTTTATGTATTTATTTTTACTATATATTTATTTACAGTTCGCTTAC
TTTTTCACTCATTCATCCACTTAATTTATTTCTTCGTTTCATTTATGTGT
TTATTCTTCTTCGCCCCGTCTTCCGTCTTCCATGCTTGCAGCACTTCCAG
CAGCCACATTCCCTCCCTATGTGGGCCGGCATCGGATAAATCGATAGTTT
GA

Synonyms

Publications