jgi.p|Nanoce1779_2|598775, mRNA_7439 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598775
Unique Name	mRNA_7439
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1293
Alignment location	scaffold_19:525327..526619 +

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Properties


Property Name	Value
TranscriptId	598861
Track	FilteredModels2
ProteinId	598775

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:525327..526619 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598775	gene_7439	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598775	mRNA_7439-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7439	CDS_7439	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:525327..526619+
coding sequence from alignment at scaffold_19:525327..526619+

mRNA sequence

>mRNA_7439 ID=mRNA_7439|Name=jgi.p|Nanoce1779_2|598775|organism=Nannochloropsis oceanica|type=mRNA|length=1293bp
AAGGAAGGAGGGAGAGAAGGAAAGCCGTGAAGGCAAAAGACAGACGGTTA
GACGGACTTGATGCACAGCCCAGCGAGGCGTTGAGACCCACAAGCTTGCA
TGCGCTGATGGAAAATGGCCAGGACGACTGTGTGGTGGCAGGAAAACGAC
TGAGAACCACCACAACAACATCACATGAATCGCCACCGCCACTACCACCA
CAAGCGCAACCACAAGAACGACAAGAACGGTTAGTAGAAAAAAGTCAACA
GCAACGGCAGCAAATTGTACCCCAACAGGAAGGTAACACGGATCGACATA
AAGGAAAAAGAGGAAGAGAAACATAGCCAAAAAAATGAGGAAGAAAGAAA
ACTTATGCACCTCCTATGAGAGAGGTAGGCAGGAAACACAACACATTCAC
AAGAAACGGATGACCAAACAAAAGATAGACTGTCGGATTAAAAAGAAGTC
AATGAAGTAAGAGATAGTTAGATAACGCCTTTTCCGTCTTTATTTTCTTG
AACTATCCCTTACTCTCGGCATGGAGATATGCTTCCCTTGGCAAGAATCA
ACTCAGCTGAATTTGGGGGAGGAGGGGAATCAAATAGAAGGATGAGAAGT
ACTCTCTTAGAAAGTCATGCAGAGAAAAGCTGCACTGATATAAAAATCAG
TACACTCCAACGCCACGTCAAAATTGCGCTGCATTTCCCCTGCGTTGTCG
CTTGTGTGTGTACACGAGGAGGTAGGAGGAGGAAGATGAGACACACACAA
CCCTTTGGCCTGTTCATGAGCATCTTTGCGCTTTCGCTCGATTTTATAAA
CGCATATGTGGATGTGTACAATGCAATTTTCTCCCTTGCTCTGTCAGCCT
TTCAGATTTGGTCGGTGCGAGCGTGCATGCGCAACAAGGAGGGTTCCTTC
CTTCGAGAAGCAGCCAACAGATCCCACCCGGAGCTATATGTATCAATGAT
TGTCTCCTTGTCTTGCCGATATTCTGCCGGGTAGAATATACGGCCTTGGG
GCTACAGGTGTGACACAAGACGCTAAGCCTTGTCTTAAAATGCTCTGACT
GGTCTAAGCAACGCAAGGCTCCGCCTCTGTAGAAGCGCTCTCACCGAAGA
AGGGGGACACGCGTTGCTATAGCCAGCGAAAGCCATCCTCTTCACTCCTG
ACCACACACACACACCGCGAAATCCCTCGCACAGGTTCATATCACCCGCA
ACAACAACAACAACACACGCACGACAACCATGTCCTGTCGCATCTACGTT
GGTACGTTTCCTCCTTCCCTCCACTCTTTCCTCTTAGTTCCCT

protein sequence of jgi.p|Nanoce1779_2|598775

>mRNA_7439-protein ID=mRNA_7439-protein|Name=jgi.p|Nanoce1779_2|598775|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MLPLARINSAEFGGGGESNRRMRSTLLESHAEKSCTDIKISTLQRHVKIA
LHFPCVVACVCTRGGRRRKMRHTQPFGLFMSIFALSLDFINAYVDVYNAI
FSLALSAFQIWSVRACMRNKEGSFLREAANRSHPELYVSMIVSLSCRYSA
G*

mRNA from alignment at scaffold_19:525327..526619+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7439 ID=mRNA_7439|Name=jgi.p|Nanoce1779_2|598775|organism=Nannochloropsis oceanica|type=mRNA|length=1293bp|location=Sequence derived from alignment at scaffold_19:525327..526619+ (Nannochloropsis oceanica)
AAGGAAGGAGGGAGAGAAGGAAAGCCGTGAAGGCAAAAGACAGACGGTTA
GACGGACTTGATGCACAGCCCAGCGAGGCGTTGAGACCCACAAGCTTGCA
TGCGCTGATGGAAAATGGCCAGGACGACTGTGTGGTGGCAGGAAAACGAC
TGAGAACCACCACAACAACATCACATGAATCGCCACCGCCACTACCACCA
CAAGCGCAACCACAAGAACGACAAGAACGGTTAGTAGAAAAAAGTCAACA
GCAACGGCAGCAAATTGTACCCCAACAGGAAGGTAACACGGATCGACATA
AAGGAAAAAGAGGAAGAGAAACATAGCCAAAAAAATGAGGAAGAAAGAAA
ACTTATGCACCTCCTATGAGAGAGGTAGGCAGGAAACACAACACATTCAC
AAGAAACGGATGACCAAACAAAAGATAGACTGTCGGATTAAAAAGAAGTC
AATGAAGTAAGAGATAGTTAGATAACGCCTTTTCCGTCTTTATTTTCTTG
AACTATCCCTTACTCTCGGCATGGAGATATGCTTCCCTTGGCAAGAATCA
ACTCAGCTGAATTTGGGGGAGGAGGGGAATCAAATAGAAGGATGAGAAGT
ACTCTCTTAGAAAGTCATGCAGAGAAAAGCTGCACTGATATAAAAATCAG
TACACTCCAACGCCACGTCAAAATTGCGCTGCATTTCCCCTGCGTTGTCG
CTTGTGTGTGTACACGAGGAGGTAGGAGGAGGAAGATGAGACACACACAA
CCCTTTGGCCTGTTCATGAGCATCTTTGCGCTTTCGCTCGATTTTATAAA
CGCATATGTGGATGTGTACAATGCAATTTTCTCCCTTGCTCTGTCAGCCT
TTCAGATTTGGTCGGTGCGAGCGTGCATGCGCAACAAGGAGGGTTCCTTC
CTTCGAGAAGCAGCCAACAGATCCCACCCGGAGCTATATGTATCAATGAT
TGTCTCCTTGTCTTGCCGATATTCTGCCGGGTAGAATATACGGCCTTGGG
GCTACAGGTGTGACACAAGACGCTAAGCCTTGTCTTAAAATGCTCTGACT
GGTCTAAGCAACGCAAGGCTCCGCCTCTGTAGAAGCGCTCTCACCGAAGA
AGGGGGACACGCGTTGCTATAGCCAGCGAAAGCCATCCTCTTCACTCCTG
ACCACACACACACACCGCGAAATCCCTCGCACAGGTTCATATCACCCGCA
ACAACAACAACAACACACGCACGACAACCATGTCCTGTCGCATCTACGTT
GGTACGTTTCCTCCTTCCCTCCACTCTTTCCTCTTAGTTCCCT

Coding sequence (CDS) from alignment at scaffold_19:525327..526619+

>mRNA_7439 ID=mRNA_7439|Name=jgi.p|Nanoce1779_2|598775|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at scaffold_19:525327..526619+ (Nannochloropsis oceanica)
ATGCTTCCCTTGGCAAGAATCAACTCAGCTGAATTTGGGGGAGGAGGGGA
ATCAAATAGAAGGATGAGAAGTACTCTCTTAGAAAGTCATGCAGAGAAAA
GCTGCACTGATATAAAAATCAGTACACTCCAACGCCACGTCAAAATTGCG
CTGCATTTCCCCTGCGTTGTCGCTTGTGTGTGTACACGAGGAGGTAGGAG
GAGGAAGATGAGACACACACAACCCTTTGGCCTGTTCATGAGCATCTTTG
CGCTTTCGCTCGATTTTATAAACGCATATGTGGATGTGTACAATGCAATT
TTCTCCCTTGCTCTGTCAGCCTTTCAGATTTGGTCGGTGCGAGCGTGCAT
GCGCAACAAGGAGGGTTCCTTCCTTCGAGAAGCAGCCAACAGATCCCACC
CGGAGCTATATGTATCAATGATTGTCTCCTTGTCTTGCCGATATTCTGCC
GGGTAG

Synonyms

Publications