jgi.p|Nanoce1779_2|135519, mRNA_7438 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|135519
Unique NamemRNA_7438
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length912
Alignment locationscaffold_19:524841..525752 -

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Properties
Property NameValue
TranscriptId135605
TrackFilteredModels2
ProteinId135519
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:524841..525752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|135519gene_7438Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|135519mRNA_7438-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7438CDS_7438Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7438 ID=mRNA_7438|Name=jgi.p|Nanoce1779_2|135519|organism=Nannochloropsis oceanica|type=mRNA|length=912bp
ATCTTTTGTTTGGTCATCCGTTTCTTGTGAATGTGTTGTGTTTCCTGCCT
ACCTCTCTCATAGGAGGTGCATAAGTTTTCTTTCTTCCTCATTTTTTTGG
CTATGTTTCTCTTCCTCTTTTTCCTTTATGTCGATCCGTGTTACCTTCCT
GTTGGGGTACAATTTGCTGCCGTTGCTGTTGACTTTTTTCTACTAACCGT
TCTTGTCGTTCTTGTGGTTGCGCTTGTGGTGGTAGTGGCGGTGGCGATTC
ATGTGATGTTGTTGTGGTGGTTCTCAGTCGTTTTCCTGCCACCACACAGT
CGTCCTGGCCATTTTCCATCAGCGCATGCAAGCTTGTGGGTCTCAACGCC
TCGCTGGGCTGTGCATCAAGTCCGTCTAACCGTCTGTCTTTTGCCTTCAC
GGCTTTCCTTCTCTCCCTCCTTCCTTCTTTCCTTCTCTTCCTCCTTCCTT
CTTTCCTTCTCTCCCTCCTTCCTTCTTTCCTTCTCTCCCTCCTTCCATGT
ATCTCGTCTTTCTCCTCTCCTCCTCTTCCCCCGTTTGGATTTACTCAGCA
GTCGGGCTCCGTCCCGTTTCTCGCCTCAACGCATGCATGTCGAAACGTCC
CACTAAAATGAAGCGCGCGTATCATCATTATTATTAGCCTTCTTTTTGTT
TTTCCTTATCATTATTATTAGCCTTCTTTATGATTATCATTATTATTAGC
CTTCTTTTTGATTATCATTATTATTAGCCTTCTTTTTGTTTTTCGAGTCT
CGTGACTGAGCTTGCCTTATGCCTCTCTCTCCTCTCACCATGCCTCCATT
CCTTCCTGCATCTGTCCATTATCTTCGTTGTATATATCGACACACACACC
CACTCTTTCCCACACTCTCTCTATCCTCTCTGTTTCTTTATCCACACTCT
TTCCCTATATCC
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protein sequence of jgi.p|Nanoce1779_2|135519

>mRNA_7438-protein ID=mRNA_7438-protein|Name=jgi.p|Nanoce1779_2|135519|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MFLFLFFLYVDPCYLPVGVQFAAVAVDFFLLTVLVVLVVALVVVVAVAIH
VMLLWWFSVVFLPPHSRPGHFPSAHASLWVSTPRWAVHQVRLTVCLLPSR
LSFSPSFLLSFSSSFLLSFSPSFLLSFSPSFHVSRLSPLLLFPRLDLLSS
RAPSRFSPQRMHVETSH*
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mRNA from alignment at scaffold_19:524841..525752-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7438 ID=mRNA_7438|Name=jgi.p|Nanoce1779_2|135519|organism=Nannochloropsis oceanica|type=mRNA|length=912bp|location=Sequence derived from alignment at scaffold_19:524841..525752- (Nannochloropsis oceanica)
ATCTTTTGTTTGGTCATCCGTTTCTTGTGAATGTGTTGTGTTTCCTGCCT
ACCTCTCTCATAGGAGGTGCATAAGTTTTCTTTCTTCCTCATTTTTTTGG
CTATGTTTCTCTTCCTCTTTTTCCTTTATGTCGATCCGTGTTACCTTCCT
GTTGGGGTACAATTTGCTGCCGTTGCTGTTGACTTTTTTCTACTAACCGT
TCTTGTCGTTCTTGTGGTTGCGCTTGTGGTGGTAGTGGCGGTGGCGATTC
ATGTGATGTTGTTGTGGTGGTTCTCAGTCGTTTTCCTGCCACCACACAGT
CGTCCTGGCCATTTTCCATCAGCGCATGCAAGCTTGTGGGTCTCAACGCC
TCGCTGGGCTGTGCATCAAGTCCGTCTAACCGTCTGTCTTTTGCCTTCAC
GGCTTTCCTTCTCTCCCTCCTTCCTTCTTTCCTTCTCTTCCTCCTTCCTT
CTTTCCTTCTCTCCCTCCTTCCTTCTTTCCTTCTCTCCCTCCTTCCATGT
ATCTCGTCTTTCTCCTCTCCTCCTCTTCCCCCGTTTGGATTTACTCAGCA
GTCGGGCTCCGTCCCGTTTCTCGCCTCAACGCATGCATGTCGAAACGTCC
CACTAAAATGAAGCGCGCGTATCATCATTATTATTAGCCTTCTTTTTGTT
TTTCCTTATCATTATTATTAGCCTTCTTTATGATTATCATTATTATTAGC
CTTCTTTTTGATTATCATTATTATTAGCCTTCTTTTTGTTTTTCGAGTCT
CGTGACTGAGCTTGCCTTATGCCTCTCTCTCCTCTCACCATGCCTCCATT
CCTTCCTGCATCTGTCCATTATCTTCGTTGTATATATCGACACACACACC
CACTCTTTCCCACACTCTCTCTATCCTCTCTGTTTCTTTATCCACACTCT
TTCCCTATATCC
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Coding sequence (CDS) from alignment at scaffold_19:524841..525752-

>mRNA_7438 ID=mRNA_7438|Name=jgi.p|Nanoce1779_2|135519|organism=Nannochloropsis oceanica|type=CDS|length=504bp|location=Sequence derived from alignment at scaffold_19:524841..525752- (Nannochloropsis oceanica)
ATGTTTCTCTTCCTCTTTTTCCTTTATGTCGATCCGTGTTACCTTCCTGT
TGGGGTACAATTTGCTGCCGTTGCTGTTGACTTTTTTCTACTAACCGTTC
TTGTCGTTCTTGTGGTTGCGCTTGTGGTGGTAGTGGCGGTGGCGATTCAT
GTGATGTTGTTGTGGTGGTTCTCAGTCGTTTTCCTGCCACCACACAGTCG
TCCTGGCCATTTTCCATCAGCGCATGCAAGCTTGTGGGTCTCAACGCCTC
GCTGGGCTGTGCATCAAGTCCGTCTAACCGTCTGTCTTTTGCCTTCACGG
CTTTCCTTCTCTCCCTCCTTCCTTCTTTCCTTCTCTTCCTCCTTCCTTCT
TTCCTTCTCTCCCTCCTTCCTTCTTTCCTTCTCTCCCTCCTTCCATGTAT
CTCGTCTTTCTCCTCTCCTCCTCTTCCCCCGTTTGGATTTACTCAGCAGT
CGGGCTCCGTCCCGTTTCTCGCCTCAACGCATGCATGTCGAAACGTCCCA
CTAA
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Synonyms
Publications