jgi.p|Nanoce1779_2|135562, mRNA_7436 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|135562
Unique NamemRNA_7436
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length908
Alignment locationscaffold_19:522167..523225 -

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Properties
Property NameValue
TranscriptId135648
TrackFilteredModels2
ProteinId135562
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:522167..523225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|135562gene_7436Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|135562mRNA_7436-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7436CDS_7436Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7436 ID=mRNA_7436|Name=jgi.p|Nanoce1779_2|135562|organism=Nannochloropsis oceanica|type=mRNA|length=908bp
CTCCCTCCCTATCTGTTCTCCTCCGGCGCCAAACGTCCCTACCCCTCCAT
AATAATATGCCTCCTCCCCGTCCTGTCCTCCGTCCCTCCCTTCGTCCCTC
TCTCTGTCCCTCTCTCGCCTTCTCTCCCTCTCACCTGCCAGTGGCAAGCA
GTCGGCGAGGCATTTCGTGGGCACTCCTCCCCTTCCTCCCGGCTCCTGCT
GCTGTCTTTGTTGCACCCACTGCTGCTGCTGATAGAGGTGTTTGTCGTAC
TGCTGCGGCTGCTGCGGCTGCTGCTGCCGATAGAGGTGTTTGTCGTACTG
CTGCTGCAGAGCATAGAGGTTGTCGGCGGACGAGGAGCGTCCAAGGGAAG
AAGGAGGGAGGGAGGAAGAGGGAAGGGCAGCGAGAGCGGCGAGTGCAGCA
GCTGAAGAGGAAGACGATGACGCCGGACGAAGAGGGGTGTGTACTTCCTC
CTCCTCCTCCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTT
GGTACTGCTGTTGTTTTTGTTGGTACTGCTGGTGGTGGGCAGGCCGGCTG
GGAGAGCGGCTGGGGGAGGGAGTTAGGGAGGGATGGCAACCTTCCATAGC
AAAAGAAGCCATGCTCTTGAGCAGGTTTTGATGGAGATCGTCACGGAGCC
CTTGGGCTGAGGCAGAGAAGGAGGAGGAGGGGGAGGAAGATAGGGAAGAA
GAGGAGAGGGAGGAGGAGGGAGGGGGAAAACAGTTGGGGGCAGGAAGGGG
ATGGAAGGAGGTGGAGAGGGAGGAGGAGGAGGAGGAGCCGGAAGAGGCAG
CGGAGGAGGAAGAGGAAGCTGCGACGAAGAGAACGACTTCATCAATGCAT
GGCTCCCTCCCAAAACCCCTCCCTCTCCCCCTCCCTCTCCCCCTCCCTCC
CTCCCTCC
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protein sequence of jgi.p|Nanoce1779_2|135562

>mRNA_7436-protein ID=mRNA_7436-protein|Name=jgi.p|Nanoce1779_2|135562|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MPPPRPVLRPSLRPSLCPSLAFSPSHLPVASSRRGISWALLPFLPAPAAV
FVAPTAAADRGVCRTAAAAAAAAADRGVCRTAAAEHRGCRRTRSVQGKKE
GGRKREGQRERRVQQLKRKTMTPDEEGCVLPPPPPPAAAAAAAAAAAVGT
AVVFVGTAGGGQAGWESGWGRELGRDGNLP*
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mRNA from alignment at scaffold_19:522167..523225-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7436 ID=mRNA_7436|Name=jgi.p|Nanoce1779_2|135562|organism=Nannochloropsis oceanica|type=mRNA|length=1059bp|location=Sequence derived from alignment at scaffold_19:522167..523225- (Nannochloropsis oceanica)
CTCCCTCCCTATCTGTTCTCCTCCGGCGCCAAACGTCCCTACCCCTCCAT
AATAATATGCCTCCTCCCCGTCCTGTCCTCCGTCCCTCCCTTCGTCCCTC
TCTCTGTCCCTCTCTCGCCTTCTCTCCCTCTCACCTGCCAGTGGCAAGCA
GTCGGCGAGGCATTTCGTGGGCACTCCTCCCCTTCCTCCCGGCTCCTGCT
GCTGTCTTTGTTGCACCCACTGCTGCTGCTGATAGAGGTGTTTGTCGTAC
TGCTGCGGCTGCTGCGGCTGCTGCTGCCGATAGAGGTGTTTGTCGTACTG
CTGCTGCAGAGCATAGAGGTTGTCGGCGGACGAGGAGCGTCCAAGGGAAG
AAGGAGGGAGGGAGGAAGAGGGAAGGGCAGCGAGAGCGGCGAGTGCAGCA
GCTGAAGAGGAAGACGATGACGCCGGACGAAGAGGGGTGTGTACTTCCTC
CTCCTCCTCCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTT
GGTACTGCTGTTGTTTTTGTTGGTACTGCTGGTGGTGGGCAGGCCGGCTG
GGAGAGCGGCTGGGGGAGGGAGTTAGGGAGGGATGGCAACCTTCCATAGC
AAAAGAAGCCATGCTCTTGAGCAGGTTTTGATGGAGATCGTCACGGAGCC
CTTGGGCTGAGGCAGAGAAGGAGGAGGAGGGGGAGGAAGATAGGGAAGAA
GAGGAGAGGGAGGAGGAGGGAGGGGGAAAACAGTTGGGGGCAGGAAGGGG
ATGGAAGGAGGTGGAGAGGGAGGAGGAGGAGGAGGAGCCGGAAGAGGCAG
CGGAGGAGGAAGAGGAAGGTGTGTCAAGAAAAGACCTCCCTTCCCCGTCC
GTGTTGTAAGTAGCTCCCGTACTACTGCACTTGCTGTTCGGCGTTCCTCT
CTCCCGCCCGCCCTCCCTCCTTCCTCCTCCCCCTCTCAAAAACCAAGAGG
GCCGTGACAAGTCTAGAAGCTGCGACGAAGAGAACGACTTCATCAATGCA
TGGCTCCCTCCCAAAACCCCTCCCTCTCCCCCTCCCTCTCCCCCTCCCTC
CCTCCCTCC
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Coding sequence (CDS) from alignment at scaffold_19:522167..523225-

>mRNA_7436 ID=mRNA_7436|Name=jgi.p|Nanoce1779_2|135562|organism=Nannochloropsis oceanica|type=CDS|length=543bp|location=Sequence derived from alignment at scaffold_19:522167..523225- (Nannochloropsis oceanica)
ATGCCTCCTCCCCGTCCTGTCCTCCGTCCCTCCCTTCGTCCCTCTCTCTG
TCCCTCTCTCGCCTTCTCTCCCTCTCACCTGCCAGTGGCAAGCAGTCGGC
GAGGCATTTCGTGGGCACTCCTCCCCTTCCTCCCGGCTCCTGCTGCTGTC
TTTGTTGCACCCACTGCTGCTGCTGATAGAGGTGTTTGTCGTACTGCTGC
GGCTGCTGCGGCTGCTGCTGCCGATAGAGGTGTTTGTCGTACTGCTGCTG
CAGAGCATAGAGGTTGTCGGCGGACGAGGAGCGTCCAAGGGAAGAAGGAG
GGAGGGAGGAAGAGGGAAGGGCAGCGAGAGCGGCGAGTGCAGCAGCTGAA
GAGGAAGACGATGACGCCGGACGAAGAGGGGTGTGTACTTCCTCCTCCTC
CTCCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGGTACT
GCTGTTGTTTTTGTTGGTACTGCTGGTGGTGGGCAGGCCGGCTGGGAGAG
CGGCTGGGGGAGGGAGTTAGGGAGGGATGGCAACCTTCCATAG
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Synonyms
Publications