jgi.p|Nanoce1779_2|652427, mRNA_7433 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|652427
Unique NamemRNA_7433
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1128
Alignment locationscaffold_19:515734..516861 +

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Properties
Property NameValue
TranscriptId652513
TrackFilteredModels2
ProteinId652427
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:515734..516861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|652427gene_7433Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|652427mRNA_7433-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7433CDS_7433Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7433 ID=mRNA_7433|Name=jgi.p|Nanoce1779_2|652427|organism=Nannochloropsis oceanica|type=mRNA|length=1128bp
TCGAGAGAGTGAGAGAGAGAGTGTGAGGGAGAGAGAACACAGGTTGTGGA
TCCCGCGGCACGTAAAAGTGATGGATCTTAGTCGTCATCGCCTTTCTTTC
CATGTCCTCCTTCCCAGAAAGAAACCCACTTAGTTCACAACCGATGTGCA
TTACACACAGGAATAGCTAGACCTTGCGCGTGATCTCGTCGTAAAGGGCA
CTTCTGCATCCACCTTCGAGGTCGCCGCGCCGAGCAATACCCCTGGCCAA
TCAGTCGCACAAGGTAACCAAGTAAAACTTTCCCTAACCCTCCTCCTACA
ATGGCCGTTCGCATCCGTGGTGGGGGCGCTCGTGTGCAACAAGGCAGGGA
TAGAAGAAAGCGCCCGTGTCCCGCAGGCATCGCTTGTCGCTTTCAGCATG
AGATGCAGGTAAGGCTGGAGTTGTGGTCTACTCCATTCCTTCCCTCTTTT
CCCTACCCATCTTTCCCTTGGCTTCTTATTCACAGCACTCACAAACCGCG
GAACTCATTCGCTTTCCCTCATCCACAGCATATAATGGAATTCACGCACG
ACAGGTCTACAATCGTCGGGGGAGGGGGCAGGCGCGGGAGAGGACGAGGA
CGATTGGGAAGAGAGGGTAGAGGGGGAGGAGGACGAGAAGGAGGAAGTGG
AAGAGGAGGAGGGAGGACGGCATGGCATGGGCAAGGACATCGGTTGGGTG
GTGGAATGAATGGAGCAGCAGAAGGAGAGGAAAACCCGAAGAGAAAGGGG
GGTGGAGGGAGGGCGAGAGGGACGAGTGGAGGGAAGAAGACGAGGGTTTT
TGGAGGCCCTGGGCAGGCCTTTGGGGAAGGAGGGAAGGAGGAGGAAGAGG
AGGAGGAGATACAGGTGGTTGAAAGGCGGGAAGGAGGAAGTCGAGGGGGA
GAAAGGGGGGCAAGGGCAATGGAGGAGAATGTCGGACCTGAATTGATTGA
CGATGACAGCGAGGAGGAGGAGGAGGAGGAGGAGAGGGAGGAGGGAATCG
AGGTGATCGAGGGCAAGAAAGATGGAGGAAATGAGGGAGGATTGAGTTGT
CCGATTTGTGGGGTAGAAGTTGGAGGGTGGGATGTGGGTATGGACAAACA
TTTGCGAGAGAGGCATGAGATGACTTAG
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protein sequence of jgi.p|Nanoce1779_2|652427

>mRNA_7433-protein ID=mRNA_7433-protein|Name=jgi.p|Nanoce1779_2|652427|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MAVRIRGGGARVQQGRDRRKRPCPAGIACRFQHEMQVRLELWSTPFLPSF
PYPSFPWLLIHSTHKPRNSFAFPHPQHIMEFTHDRSTIVGGGGRRGRGRG
RLGREGRGGGGREGGSGRGGGRTAWHGQGHRLGGGMNGAAEGEENPKRKG
GGGRARGTSGGKKTRVFGGPGQAFGEGGKEEEEEEEIQVVERREGGSRGG
ERGARAMEENVGPELIDDDSEEEEEEEEREEGIEVIEGKKDGGNEGGLSC
PICGVEVGGWDVGMDKHLRERHEMT*
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mRNA from alignment at scaffold_19:515734..516861+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7433 ID=mRNA_7433|Name=jgi.p|Nanoce1779_2|652427|organism=Nannochloropsis oceanica|type=mRNA|length=1128bp|location=Sequence derived from alignment at scaffold_19:515734..516861+ (Nannochloropsis oceanica)
TCGAGAGAGTGAGAGAGAGAGTGTGAGGGAGAGAGAACACAGGTTGTGGA
TCCCGCGGCACGTAAAAGTGATGGATCTTAGTCGTCATCGCCTTTCTTTC
CATGTCCTCCTTCCCAGAAAGAAACCCACTTAGTTCACAACCGATGTGCA
TTACACACAGGAATAGCTAGACCTTGCGCGTGATCTCGTCGTAAAGGGCA
CTTCTGCATCCACCTTCGAGGTCGCCGCGCCGAGCAATACCCCTGGCCAA
TCAGTCGCACAAGGTAACCAAGTAAAACTTTCCCTAACCCTCCTCCTACA
ATGGCCGTTCGCATCCGTGGTGGGGGCGCTCGTGTGCAACAAGGCAGGGA
TAGAAGAAAGCGCCCGTGTCCCGCAGGCATCGCTTGTCGCTTTCAGCATG
AGATGCAGGTAAGGCTGGAGTTGTGGTCTACTCCATTCCTTCCCTCTTTT
CCCTACCCATCTTTCCCTTGGCTTCTTATTCACAGCACTCACAAACCGCG
GAACTCATTCGCTTTCCCTCATCCACAGCATATAATGGAATTCACGCACG
ACAGGTCTACAATCGTCGGGGGAGGGGGCAGGCGCGGGAGAGGACGAGGA
CGATTGGGAAGAGAGGGTAGAGGGGGAGGAGGACGAGAAGGAGGAAGTGG
AAGAGGAGGAGGGAGGACGGCATGGCATGGGCAAGGACATCGGTTGGGTG
GTGGAATGAATGGAGCAGCAGAAGGAGAGGAAAACCCGAAGAGAAAGGGG
GGTGGAGGGAGGGCGAGAGGGACGAGTGGAGGGAAGAAGACGAGGGTTTT
TGGAGGCCCTGGGCAGGCCTTTGGGGAAGGAGGGAAGGAGGAGGAAGAGG
AGGAGGAGATACAGGTGGTTGAAAGGCGGGAAGGAGGAAGTCGAGGGGGA
GAAAGGGGGGCAAGGGCAATGGAGGAGAATGTCGGACCTGAATTGATTGA
CGATGACAGCGAGGAGGAGGAGGAGGAGGAGGAGAGGGAGGAGGGAATCG
AGGTGATCGAGGGCAAGAAAGATGGAGGAAATGAGGGAGGATTGAGTTGT
CCGATTTGTGGGGTAGAAGTTGGAGGGTGGGATGTGGGTATGGACAAACA
TTTGCGAGAGAGGCATGAGATGACTTAG
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Coding sequence (CDS) from alignment at scaffold_19:515734..516861+

>mRNA_7433 ID=mRNA_7433|Name=jgi.p|Nanoce1779_2|652427|organism=Nannochloropsis oceanica|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_19:515734..516861+ (Nannochloropsis oceanica)
ATGGCCGTTCGCATCCGTGGTGGGGGCGCTCGTGTGCAACAAGGCAGGGA
TAGAAGAAAGCGCCCGTGTCCCGCAGGCATCGCTTGTCGCTTTCAGCATG
AGATGCAGGTAAGGCTGGAGTTGTGGTCTACTCCATTCCTTCCCTCTTTT
CCCTACCCATCTTTCCCTTGGCTTCTTATTCACAGCACTCACAAACCGCG
GAACTCATTCGCTTTCCCTCATCCACAGCATATAATGGAATTCACGCACG
ACAGGTCTACAATCGTCGGGGGAGGGGGCAGGCGCGGGAGAGGACGAGGA
CGATTGGGAAGAGAGGGTAGAGGGGGAGGAGGACGAGAAGGAGGAAGTGG
AAGAGGAGGAGGGAGGACGGCATGGCATGGGCAAGGACATCGGTTGGGTG
GTGGAATGAATGGAGCAGCAGAAGGAGAGGAAAACCCGAAGAGAAAGGGG
GGTGGAGGGAGGGCGAGAGGGACGAGTGGAGGGAAGAAGACGAGGGTTTT
TGGAGGCCCTGGGCAGGCCTTTGGGGAAGGAGGGAAGGAGGAGGAAGAGG
AGGAGGAGATACAGGTGGTTGAAAGGCGGGAAGGAGGAAGTCGAGGGGGA
GAAAGGGGGGCAAGGGCAATGGAGGAGAATGTCGGACCTGAATTGATTGA
CGATGACAGCGAGGAGGAGGAGGAGGAGGAGGAGAGGGAGGAGGGAATCG
AGGTGATCGAGGGCAAGAAAGATGGAGGAAATGAGGGAGGATTGAGTTGT
CCGATTTGTGGGGTAGAAGTTGGAGGGTGGGATGTGGGTATGGACAAACA
TTTGCGAGAGAGGCATGAGATGACTTAG
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Synonyms
Publications