jgi.p|Nanoce1779_2|598753, mRNA_7432 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598753
Unique NamemRNA_7432
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1283
Alignment locationscaffold_19:514534..515816 +

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Properties
Property NameValue
TranscriptId598839
TrackFilteredModels2
ProteinId598753
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:514534..515816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598753gene_7432Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598753mRNA_7432-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7432CDS_7432Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7432 ID=mRNA_7432|Name=jgi.p|Nanoce1779_2|598753|organism=Nannochloropsis oceanica|type=mRNA|length=1283bp
GGGCGCCGCTGGTTTACGTTTCCCCTTGGAGAAAAAAAAGCGATACGGGC
ATTTGAATTTACACAGACGCAGGGTTCATACATTCACGCTCAACACACAC
GTTTGGATTCAAAATAATAGACATTATCCATACAACTTTTCATTGATAAG
CCGACGCAGCTTGCGTGGTAAATAATATCAGGAGGGCATGAAGCTCACTG
TGGAATGGTGGGCTGCCCTTTGATGATGTTTTGAAGACCAAACTGCGTCT
TAGCAACCAAATAGTTCCGATTGTTTGCTCGGTTTCTTGATGATGTATAG
CTTGCTGAGATTTCGTGCTTGGCTTTTGATTCCCTTCCGCGGCTGCGGAA
GCTTGTATATCTCCAGCACCACCTGTAGAACAGGTGCGTGCTCACATATT
TGGATCAATATCAAGACCTTTGTAGGAAAGTTGTTGCTACTCAAGGAAGT
CCTTCGTCATCTTCGTCAATCTTGATTAAGCGGATCTGTGGTGGCGAAGA
CGTCGAAAGCAGAATAGAGTAATTACGGCCCAACAGTGACTACCTGGAGC
AATGTAATCCAATCCCTTTCCTAGAGAATAACAGATGCAGATCCCCTTAT
TTTGTCCTTGTGATAAATCTCTTGCTTTTACCTATGTATCACTTTCACTT
CCTCGCAGTCTTCTTGCTCTAACGAACCATCTACAGCTCTGTGGTGGCAT
TGCGGTGTGGCTTGCCCCGTCTACGACCACGGCCGCTTTGACCCAATGGG
CTTACATGAAACCTTCCGTCGTGCACCACAGTTTTCTATGTAATATGAAA
ACTGTAGGTGTGTCGTCTTGTGTGTCAAGCTTTTCTTCTTTGCTGATGAC
GTGGCGAGCCTGTATGAGGGAGGAAAATCGTCGAATGACATCGTATTAAA
GCACTCAACTTAAGCGAGACAAGAAGCACACCATGGCACACTCTTTTATG
CGCCATTTGTACTTTTTCAACATTAGAGGATGAAGAGAGGGTGAGGCAAA
GAGAAATAGATGGAGATAGATATAGATCGAAAGAGGTAGAAGTAGTGACG
GAGAAAGAAAAAGAGAGAAAGAGAAAGGAAAAGAGGGAGAGAGTGAGGGA
GAGAGATGGAGGAGAAAGGAAGACAGAGTGGGAGAGAGAGAAAGAGAAAG
AGAAGAGAAAGATGGAGGGGGGCAAGAAAGAGAAAGAAAAAGAAATAGAA
TCGAGAGAGTGAGAGAGAGAGTGTGAGGGAGAGAGAACACAGGTTGTGGA
TCCCGCGGCACGTAAAAGTGATGGATCTTAGTC
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protein sequence of jgi.p|Nanoce1779_2|598753

>mRNA_7432-protein ID=mRNA_7432-protein|Name=jgi.p|Nanoce1779_2|598753|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MQIPLFCPCDKSLAFTYVSLSLPRSLLALTNHLQLCGGIAVWLAPSTTTA
ALTQWAYMKPSVVHHSFLCNMKTVGVSSCVSSFSSLLMTWRACMREENRR
MTSY*
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mRNA from alignment at scaffold_19:514534..515816+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7432 ID=mRNA_7432|Name=jgi.p|Nanoce1779_2|598753|organism=Nannochloropsis oceanica|type=mRNA|length=1283bp|location=Sequence derived from alignment at scaffold_19:514534..515816+ (Nannochloropsis oceanica)
GGGCGCCGCTGGTTTACGTTTCCCCTTGGAGAAAAAAAAGCGATACGGGC
ATTTGAATTTACACAGACGCAGGGTTCATACATTCACGCTCAACACACAC
GTTTGGATTCAAAATAATAGACATTATCCATACAACTTTTCATTGATAAG
CCGACGCAGCTTGCGTGGTAAATAATATCAGGAGGGCATGAAGCTCACTG
TGGAATGGTGGGCTGCCCTTTGATGATGTTTTGAAGACCAAACTGCGTCT
TAGCAACCAAATAGTTCCGATTGTTTGCTCGGTTTCTTGATGATGTATAG
CTTGCTGAGATTTCGTGCTTGGCTTTTGATTCCCTTCCGCGGCTGCGGAA
GCTTGTATATCTCCAGCACCACCTGTAGAACAGGTGCGTGCTCACATATT
TGGATCAATATCAAGACCTTTGTAGGAAAGTTGTTGCTACTCAAGGAAGT
CCTTCGTCATCTTCGTCAATCTTGATTAAGCGGATCTGTGGTGGCGAAGA
CGTCGAAAGCAGAATAGAGTAATTACGGCCCAACAGTGACTACCTGGAGC
AATGTAATCCAATCCCTTTCCTAGAGAATAACAGATGCAGATCCCCTTAT
TTTGTCCTTGTGATAAATCTCTTGCTTTTACCTATGTATCACTTTCACTT
CCTCGCAGTCTTCTTGCTCTAACGAACCATCTACAGCTCTGTGGTGGCAT
TGCGGTGTGGCTTGCCCCGTCTACGACCACGGCCGCTTTGACCCAATGGG
CTTACATGAAACCTTCCGTCGTGCACCACAGTTTTCTATGTAATATGAAA
ACTGTAGGTGTGTCGTCTTGTGTGTCAAGCTTTTCTTCTTTGCTGATGAC
GTGGCGAGCCTGTATGAGGGAGGAAAATCGTCGAATGACATCGTATTAAA
GCACTCAACTTAAGCGAGACAAGAAGCACACCATGGCACACTCTTTTATG
CGCCATTTGTACTTTTTCAACATTAGAGGATGAAGAGAGGGTGAGGCAAA
GAGAAATAGATGGAGATAGATATAGATCGAAAGAGGTAGAAGTAGTGACG
GAGAAAGAAAAAGAGAGAAAGAGAAAGGAAAAGAGGGAGAGAGTGAGGGA
GAGAGATGGAGGAGAAAGGAAGACAGAGTGGGAGAGAGAGAAAGAGAAAG
AGAAGAGAAAGATGGAGGGGGGCAAGAAAGAGAAAGAAAAAGAAATAGAA
TCGAGAGAGTGAGAGAGAGAGTGTGAGGGAGAGAGAACACAGGTTGTGGA
TCCCGCGGCACGTAAAAGTGATGGATCTTAGTC
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Coding sequence (CDS) from alignment at scaffold_19:514534..515816+

>mRNA_7432 ID=mRNA_7432|Name=jgi.p|Nanoce1779_2|598753|organism=Nannochloropsis oceanica|type=CDS|length=315bp|location=Sequence derived from alignment at scaffold_19:514534..515816+ (Nannochloropsis oceanica)
ATGCAGATCCCCTTATTTTGTCCTTGTGATAAATCTCTTGCTTTTACCTA
TGTATCACTTTCACTTCCTCGCAGTCTTCTTGCTCTAACGAACCATCTAC
AGCTCTGTGGTGGCATTGCGGTGTGGCTTGCCCCGTCTACGACCACGGCC
GCTTTGACCCAATGGGCTTACATGAAACCTTCCGTCGTGCACCACAGTTT
TCTATGTAATATGAAAACTGTAGGTGTGTCGTCTTGTGTGTCAAGCTTTT
CTTCTTTGCTGATGACGTGGCGAGCCTGTATGAGGGAGGAAAATCGTCGA
ATGACATCGTATTAA
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Synonyms
Publications