jgi.p|Nanoce1779_2|598740, mRNA_7430 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598740
Unique NamemRNA_7430
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length844
Alignment locationscaffold_19:507787..508854 -

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Properties
Property NameValue
TranscriptId598826
TrackFilteredModels2
ProteinId598740
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:507787..508854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598740gene_7430Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598740mRNA_7430-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7430CDS_7430Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7430 ID=mRNA_7430|Name=jgi.p|Nanoce1779_2|598740|organism=Nannochloropsis oceanica|type=mRNA|length=844bp
TTGGTTGTAACTTCTTTGTGCGCTTGGAAACACTCATTCGCTGTCCCTCT
TCACACAACAACATGCACTGCTTGCTTGCTGCCACCATCAATGACGACCA
CCAGAGGGAGCCACGAGTGCATGCTCTGGAGCTCCGGCATGAAGGTTGCA
GTCACGGTGTGGAGACGGGGCGCAGTTTGCCGTCGAGGAAAGGGATGCAT
ACTGCGGGGGGCTTTCTCCTCGACAAGCCACACGGGAACGGACAGGGGCA
GTGAGGGAGGGTTTCGCCAGCAGTCGATAGACAAATATGAAACGGTCAAG
GTGACGGTAGCTGTCGTCGGCACCATTGCGGCGGTTTCCGGCTCGATCGC
GTACGGCGTCCATCGCCTTGACGAGAAGGAGATTGCGCGCATCGAGGGTG
AGCGGAAGTTGGAAGTCGCGCGTGTGCAGGACAAGGCCGAAACGGAGATC
AAGCGCATGGCGGGCGATGTTGCGCGTGTGGAGGGCGAGCGTAAATTGTC
CGAGCTATTTTGGAAGGCAGAGGTGGAGCGATACAAGCGCGACCTTCAGT
TGGCGCATACGTTTGACTACGAGCCCTATCAGGCCGCGATATCGCAGAAA
CAGGGACAAAAAAGGGGAGGAACTGGAGGAATGGAGGAGGAAGAGAAGAA
GGAGTAGCTTTTGGTATCCTGCGTAGATAAACAAGGAAATGTACACACTG
TGCAGAGTCAAAATAGGTAAAAGACAATGTGTGAAAGGCATGTGCAGTAG
GCGGGATAAATATGAAGAGGTGGTTGTGAGGGGTGTGGTACTCATACACG
ACGAATGCAATAACGAGGTCTCCCAAGAAGTATAAACCAGCGAG
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protein sequence of jgi.p|Nanoce1779_2|598740

>mRNA_7430-protein ID=mRNA_7430-protein|Name=jgi.p|Nanoce1779_2|598740|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MTTTRGSHECMLWSSGMKVAVTVWRRGAVCRRGKGCILRGAFSSTSHTGT
DRGSEGGFRQQSIDKYETVKVTVAVVGTIAAVSGSIAYGVHRLDEKEIAR
IEGERKLEVARVQDKAETEIKRMAGDVARVEGERKLSELFWKAEVERYKR
DLQLAHTFDYEPYQAAISQKQGQKRGGTGGMEEEEKKE*
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mRNA from alignment at scaffold_19:507787..508854-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7430 ID=mRNA_7430|Name=jgi.p|Nanoce1779_2|598740|organism=Nannochloropsis oceanica|type=mRNA|length=1068bp|location=Sequence derived from alignment at scaffold_19:507787..508854- (Nannochloropsis oceanica)
TTGGTTGTAACTTCTTTGTGCGCTTGGAAACACTCATTCGCTGTCCCTCT
TCACACAACAACATGCACTGCTTGCTTGCTGCCACCATCAATGACGACCA
CCAGAGGGAGCCACGAGTGCATGCTCTGGAGCTCCGGCATGAAGGTTGCA
GTCACGGTGTGGAGACGGGGCGCAGTTTGCCGTCGAGGTAAGGTGAATTG
TGTGGTGCATTTTGGAAGGAGGGCTATTTTTGGTCTTGGGGGGGGGGGGG
TAAAAGAGATGTTCGGTGCACGCGACCGCACACTGCGCGAGGCTTGTTGA
TCGTTTCCCGTCAGATACAGTGTCTATCCTGTCTGAGTCGCAATGTATGT
TGTGCGGGCAAGGGCTTGCGGGAAGGTGTTTACGCACAAGCACATTCATA
AACGCTAACAGGAAAGGGATGCATACTGCGGGGGGCTTTCTCCTCGACAA
GCCACACGGGAACGGACAGGGGCAGTGAGGGAGGGTTTCGCCAGCAGTCG
ATAGACAAATATGAAACGGTCAAGGTGACGGTAGCTGTCGTCGGCACCAT
TGCGGCGGTTTCCGGCTCGATCGCGTACGGCGTCCATCGCCTTGACGAGA
AGGAGATTGCGCGCATCGAGGGTGAGCGGAAGTTGGAAGTCGCGCGTGTG
CAGGACAAGGCCGAAACGGAGATCAAGCGCATGGCGGGCGATGTTGCGCG
TGTGGAGGGCGAGCGTAAATTGTCCGAGCTATTTTGGAAGGCAGAGGTGG
AGCGATACAAGCGCGACCTTCAGTTGGCGCATACGTTTGACTACGAGCCC
TATCAGGCCGCGATATCGCAGAAACAGGGACAAAAAAGGGGAGGAACTGG
AGGAATGGAGGAGGAAGAGAAGAAGGAGTAGCTTTTGGTATCCTGCGTAG
ATAAACAAGGAAATGTACACACTGTGCAGAGTCAAAATAGGTAAAAGACA
ATGTGTGAAAGGCATGTGCAGTAGGCGGGATAAATATGAAGAGGTGGTTG
TGAGGGGTGTGGTACTCATACACGACGAATGCAATAACGAGGTCTCCCAA
GAAGTATAAACCAGCGAG
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Coding sequence (CDS) from alignment at scaffold_19:507787..508854-

>mRNA_7430 ID=mRNA_7430|Name=jgi.p|Nanoce1779_2|598740|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_19:507787..508854- (Nannochloropsis oceanica)
GAAAGGGATGCATACTGCGGGGGGCTTTCTCCTCGACAAGCCACACGGGA
ACGGACAGGGGCAGTGAGGGAGGGTTTCGCCAGCAGTCGATAGACAAATA
TGAAACGGTCAAGGTGACGGTAGCTGTCGTCGGCACCATTGCGGCGGTTT
CCGGCTCGATCGCGTACGGCGTCCATCGCCTTGACGAGAAGGAGATTGCG
CGCATCGAGGGTGAGCGGAAGTTGGAAGTCGCGCGTGTGCAGGACAAGGC
CGAAACGGAGATCAAGCGCATGGCGGGCGATGTTGCGCGTGTGGAGGGCG
AGCGTAAATTGTCCGAGCTATTTTGGAAGGCAGAGGTGGAGCGATACAAG
CGCGACCTTCAGTTGGCGCATACGTTTGACTACGAGCCCTATCAGGCCGC
GATATCGCAGAAACAGGGACAAAAAAGGGGAGGAACTGGAGGAATGGAGG
AGGAAGAGAAGAAGGAGTAGATGACGACCACCAGAGGGAGCCACGAGTGC
ATGCTCTGGAGCTCCGGCATGAAGGTTGCAGTCACGGTGTGGAGACGGGG
CGCAGTTTGCCGTCGAGGAAAGGGATGCATACTGCGGGGGGCTTTCTCCT
CGACAAGCCACACGGGAACGGACAGGGGCAGTGAGGGAGGGTTTCGCCAG
CAGTCGATAGACAAATATGAAACGGTCAAGGTGACGGTAGCTGTCGTCGG
CACCATTGCGGCGGTTTCCGGCTCGATCGCGTACGGCGTCCATCGCCTTG
ACGAGAAGGAGATTGCGCGCATCGAGGGTGAGCGGAAGTTGGAAGTCGCG
CGTGTGCAGGACAAGGCCGAAACGGAGATCAAGCGCATGGCGGGCGATGT
TGCGCGTGTGGAGGGCGAGCGTAAATTGTCCGAGCTATTTTGGAAGGCAG
AGGTGGAGCGATACAAGCGCGACCTTCAGTTGGCGCATACGTTTGACTAC
GAGCCCTATCAGGCCGCGATATCGCAGAAACAGGGACAAAAAAGGGGAGG
AACTGGAGGAATGGAGGAGGAAGAGAAGAAGGAGTAGATGACGACCACCA
GAGGGAGCCACGAGTGCATGCTCTGGAGCTCCGGCATGAAGGTTGCAGTC
ACGGTGTGGAGACGGGGCGCAGTTTGCCGTCGAG
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Synonyms
Publications