jgi.p|Nanoce1779_2|134775, mRNA_7429 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|134775
Unique NamemRNA_7429
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1267
Alignment locationscaffold_19:504814..506080 -

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Properties
Property NameValue
TranscriptId134861
TrackFilteredModels2
ProteinId134775
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:504814..506080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|134775gene_7429Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|134775mRNA_7429-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7429CDS_7429Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7429 ID=mRNA_7429|Name=jgi.p|Nanoce1779_2|134775|organism=Nannochloropsis oceanica|type=mRNA|length=1267bp
AGCGGGAGGATGTGACAGAGGCGAGCTCTTGCGATTTTCGCGCACGCACG
TTGTGTCACGTACGTATGTCCAGCCCATCGTCCAAGCCCGCAGACCTTGC
CGCGCCTTGCGGGCGTGACCCGCCCTCGTTTGCTTTTCACGCACGGTACG
CATGTCCTTTTCTATGCTGGCAGCAAATCAAGCGGTGCAAGTTATTAAAA
CGCTCTTGTCACGATGTACTCGCGAGACCATAGATTTGGAAATAGGTGGT
GGGTGGAGGAGAGGCTGTTGTTGACCGTGAGAACCGGCATGCAAACATCA
ACTCACCTGACGCACAAGCAGCACCGCCCCTCAATCTATGTTCTCCCTTT
CGTCCATACCAGTCCCCTAAACAGGCAGTACGACGGGGTGGACGTCGTAT
ACGCCATGATTCGTATTGCGACATGTCCCAAGAGGTTTTGCGCGGCCAAT
AAGCACCGGCAAAAATCGTCCATGAAAAGCTTTGCCGCCTCCTGCGTCAT
GTCCCGCCACTCCTCCTTCACCTCCTCCTCCTCCTCCTCCTCCTCCATCC
CCTTCTCTGCTGTCACGAGAAGGACCAAGCCGATGTTCACCTATCACATC
TCTCGCTCCTCTTCCTTCCACTCCACTGCCTTCCGCTCCAACCCCTCCTT
TACGCCTCCTTCTAAAAAGGCTGCCGTCTCCCTCGCAGATACCCTCGAGC
CCATCTGCTCCTCCCCCTCCCCCTCACTGACATCTCCCCACCATTCCTCC
CTACCCCCTTCGTCCCTTCCGTCCTATCACCATCCAAACGTGACCTCGTG
GGAAGATAACTTGCGAGCGGAGGATGCGGCATGGCTTTCGGGATCCCGGC
CTCTGGATTGGTGGACTGGTATGTGCAAGCAGGGGAGAGAGGGAGGGAAA
GGAGGAGGGAGAGAGGGAGGGAAGGGAGGAAGGGAGGGAGGAAGGACAAG
AGATTGAAAGAGAATCCAAAAACTCAAATATCACGCCGACACTATTTGCC
ATTTAATACACGTGTTCCAATACCTCTTCCCTCCACTCTTTCCCTTTCTC
TCTCCTGTAGGTTCCATCCCCTTACCCGGACACAGTTGCCCCGGTCTGCT
CCCCGACGGAACGCTCACTTCCCTCCCTCTTCCCCGTCTTGCCTCCTCAA
CCTTGACGAGGGAGCAGCTGGTGGATTATTTCGACAACACATGGGCCCTG
ACGGAGGTGTTGTTCGCGGGGTTGCAGGGACCGGAAGGCTTCTACCAACC
GCCGTACCACGGCTTGA
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protein sequence of jgi.p|Nanoce1779_2|134775

>mRNA_7429-protein ID=mRNA_7429-protein|Name=jgi.p|Nanoce1779_2|134775|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MYSRDHRFGNRWWVEERLLLTVRTGMQTSTHLTHKQHRPSIYVLPFVHTS
PLNRQYDGVDVVYAMIRIATCPKRFCAANKHRQKSSMKSFAASCVMSRHS
SFTSSSSSSSSIPFSAVTRRTKPMFTYHISRSSSFHSTAFRSNPSFTPPS
KKAAVSLADTLEPICSSPSPSLTSPHHSSLPPSSLPSYHHPNVTSWEDNL
RAEDAAWLSGSRPLDWWTGMCKQGREGGKGGGREGGKGGREGGRTRD*
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mRNA from alignment at scaffold_19:504814..506080-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7429 ID=mRNA_7429|Name=jgi.p|Nanoce1779_2|134775|organism=Nannochloropsis oceanica|type=mRNA|length=1267bp|location=Sequence derived from alignment at scaffold_19:504814..506080- (Nannochloropsis oceanica)
AGCGGGAGGATGTGACAGAGGCGAGCTCTTGCGATTTTCGCGCACGCACG
TTGTGTCACGTACGTATGTCCAGCCCATCGTCCAAGCCCGCAGACCTTGC
CGCGCCTTGCGGGCGTGACCCGCCCTCGTTTGCTTTTCACGCACGGTACG
CATGTCCTTTTCTATGCTGGCAGCAAATCAAGCGGTGCAAGTTATTAAAA
CGCTCTTGTCACGATGTACTCGCGAGACCATAGATTTGGAAATAGGTGGT
GGGTGGAGGAGAGGCTGTTGTTGACCGTGAGAACCGGCATGCAAACATCA
ACTCACCTGACGCACAAGCAGCACCGCCCCTCAATCTATGTTCTCCCTTT
CGTCCATACCAGTCCCCTAAACAGGCAGTACGACGGGGTGGACGTCGTAT
ACGCCATGATTCGTATTGCGACATGTCCCAAGAGGTTTTGCGCGGCCAAT
AAGCACCGGCAAAAATCGTCCATGAAAAGCTTTGCCGCCTCCTGCGTCAT
GTCCCGCCACTCCTCCTTCACCTCCTCCTCCTCCTCCTCCTCCTCCATCC
CCTTCTCTGCTGTCACGAGAAGGACCAAGCCGATGTTCACCTATCACATC
TCTCGCTCCTCTTCCTTCCACTCCACTGCCTTCCGCTCCAACCCCTCCTT
TACGCCTCCTTCTAAAAAGGCTGCCGTCTCCCTCGCAGATACCCTCGAGC
CCATCTGCTCCTCCCCCTCCCCCTCACTGACATCTCCCCACCATTCCTCC
CTACCCCCTTCGTCCCTTCCGTCCTATCACCATCCAAACGTGACCTCGTG
GGAAGATAACTTGCGAGCGGAGGATGCGGCATGGCTTTCGGGATCCCGGC
CTCTGGATTGGTGGACTGGTATGTGCAAGCAGGGGAGAGAGGGAGGGAAA
GGAGGAGGGAGAGAGGGAGGGAAGGGAGGAAGGGAGGGAGGAAGGACAAG
AGATTGAAAGAGAATCCAAAAACTCAAATATCACGCCGACACTATTTGCC
ATTTAATACACGTGTTCCAATACCTCTTCCCTCCACTCTTTCCCTTTCTC
TCTCCTGTAGGTTCCATCCCCTTACCCGGACACAGTTGCCCCGGTCTGCT
CCCCGACGGAACGCTCACTTCCCTCCCTCTTCCCCGTCTTGCCTCCTCAA
CCTTGACGAGGGAGCAGCTGGTGGATTATTTCGACAACACATGGGCCCTG
ACGGAGGTGTTGTTCGCGGGGTTGCAGGGACCGGAAGGCTTCTACCAACC
GCCGTACCACGGCTTGA
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Coding sequence (CDS) from alignment at scaffold_19:504814..506080-

>mRNA_7429 ID=mRNA_7429|Name=jgi.p|Nanoce1779_2|134775|organism=Nannochloropsis oceanica|type=CDS|length=744bp|location=Sequence derived from alignment at scaffold_19:504814..506080- (Nannochloropsis oceanica)
ATGTACTCGCGAGACCATAGATTTGGAAATAGGTGGTGGGTGGAGGAGAG
GCTGTTGTTGACCGTGAGAACCGGCATGCAAACATCAACTCACCTGACGC
ACAAGCAGCACCGCCCCTCAATCTATGTTCTCCCTTTCGTCCATACCAGT
CCCCTAAACAGGCAGTACGACGGGGTGGACGTCGTATACGCCATGATTCG
TATTGCGACATGTCCCAAGAGGTTTTGCGCGGCCAATAAGCACCGGCAAA
AATCGTCCATGAAAAGCTTTGCCGCCTCCTGCGTCATGTCCCGCCACTCC
TCCTTCACCTCCTCCTCCTCCTCCTCCTCCTCCATCCCCTTCTCTGCTGT
CACGAGAAGGACCAAGCCGATGTTCACCTATCACATCTCTCGCTCCTCTT
CCTTCCACTCCACTGCCTTCCGCTCCAACCCCTCCTTTACGCCTCCTTCT
AAAAAGGCTGCCGTCTCCCTCGCAGATACCCTCGAGCCCATCTGCTCCTC
CCCCTCCCCCTCACTGACATCTCCCCACCATTCCTCCCTACCCCCTTCGT
CCCTTCCGTCCTATCACCATCCAAACGTGACCTCGTGGGAAGATAACTTG
CGAGCGGAGGATGCGGCATGGCTTTCGGGATCCCGGCCTCTGGATTGGTG
GACTGGTATGTGCAAGCAGGGGAGAGAGGGAGGGAAAGGAGGAGGGAGAG
AGGGAGGGAAGGGAGGAAGGGAGGGAGGAAGGACAAGAGATTGA
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Synonyms
Publications