jgi.p|Nanoce1779_2|135188, mRNA_7428 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|135188
Unique NamemRNA_7428
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length597
Alignment locationscaffold_19:493806..494855 +

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Properties
Property NameValue
TranscriptId135274
TrackFilteredModels2
ProteinId135188
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:493806..494855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|135188gene_7428Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|135188mRNA_7428-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7428CDS_7428Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7428 ID=mRNA_7428|Name=jgi.p|Nanoce1779_2|135188|organism=Nannochloropsis oceanica|type=mRNA|length=597bp
TTGTTAGCGACAAAGGATCGTAGTTAAGTGTGCATATCATAGTCTGTGCC
GTGAATCCATGTTGGACGAGGAGGAGGAAGAGGAGGAGGACGAGATCGAG
GAGATAGACGACGAGGAAAGTAGCAGCTGCTTCTTGACGGAGGCTCGTGA
TGCTGCAATTGGGAGAAGCAGCAATGCAACAAAGCATGACCGTCGTGTCA
TTGTTCATATCGACCTCGATTGTTTCTACGCCCAATGTGAGATGAGGCAC
AACCCATCCCTTCGCGACCGACCCATGGCCATCCAGCAGAAGTACCTCCT
CGTCACCTCCAATCAAGTTGCGCGAAACCAGGGAGTCCACAAAATGCAGG
TTTGGCCCCCTCCCCCACTCCCTCCCTCCTTTTTTCACCCTCCTTTTTTT
CCATCCTTCTCATCCCCGTCTATTTCCTGTGTGCTTTTGACACCCTCATG
GATCAATTGAGGCTTCCTTTGGGGGAAATTTATTTGTAATATTAATTTGT
ATATTTTTGTAATTGAACTTATTTATACATATATGTGTGTTTATAATGTG
TATTCATACACTACGCAGTACTTTAAGGAGCCACATTAAAAGGATGG
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protein sequence of jgi.p|Nanoce1779_2|135188

>mRNA_7428-protein ID=mRNA_7428-protein|Name=jgi.p|Nanoce1779_2|135188|organism=Nannochloropsis oceanica|type=polypeptide|length=134bp
MLDEEEEEEEDEIEEIDDEESSSCFLTEARDAAIGRSSNATKHDRRVIVH
IDLDCFYAQCEMRHNPSLRDRPMAIQQKYLLVTSNQVARNQGVHKMQVWP
PPPLPPSFFHPPFFPSFSSPSISCVLLTPSWIN*
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mRNA from alignment at scaffold_19:493806..494855+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7428 ID=mRNA_7428|Name=jgi.p|Nanoce1779_2|135188|organism=Nannochloropsis oceanica|type=mRNA|length=1050bp|location=Sequence derived from alignment at scaffold_19:493806..494855+ (Nannochloropsis oceanica)
TTGTTAGCGACAAAGGTGATCATAAAATGTCCGTCTGCGCTTCGCAAACG
GCTGTGTGATACAGGCAAATTGGTGGGTAAAGCATGGTCCCTTCATGAGA
TAAAAGTATGTATGCACGAGAAGCAAGCCCGATTTCCTTGCCTCGCTGAT
GAAACCACGTTTTCATGCACATGTACATCGCAGGATCGTAGTTAAGTGTG
CATATCATAGTCTGTGCCGTGAATCCATGTTGGACGAGGAGGAGGAAGAG
GAGGAGGACGAGATCGAGGAGATAGACGACGAGGAAAGTAGCAGCTGCTT
CTTGACGGAGGCTCGTGATGCTGCAATTGGGAGAAGCAGCAATGCAACAA
AGCATGACCGTCGTGTCATTGTTCATATCGGTAAGCGAGGGCAGGGGTGA
GAAGATAGGAAAAACGAAAGGGAAGGGAGTACGGAAGGCAATCGCAGGTG
AGTGAATGGAAGGGATGTGAGGAGGGAATGGAACTAAATACGGTCGATGC
AAGGACTTTACACGTCCTACACGCATATTTGTAAATCCTCAATCCTCATT
ATCCCTATCCCTCCTTCCCCTGTTCATTCTCGTCCCAACTCTCTCTTCTC
CTAGACCAACTAATCCACCCACCCTCCCTCCCTCCCTTCCTTCCTTCCTC
CCCTCCTCCCCACAGACCTCGATTGTTTCTACGCCCAATGTGAGATGAGG
CACAACCCATCCCTTCGCGACCGACCCATGGCCATCCAGCAGAAGTACCT
CCTCGTCACCTCCAATCAAGTTGCGCGAAACCAGGGAGTCCACAAAATGC
AGGTTTGGCCCCCTCCCCCACTCCCTCCCTCCTTTTTTCACCCTCCTTTT
TTTCCATCCTTCTCATCCCCGTCTATTTCCTGTGTGCTTTTGACACCCTC
ATGGATCAATTGAGGCTTCCTTTGGGGGAAATTTATTTGTAATATTAATT
TGTATATTTTTGTAATTGAACTTATTTATACATATATGTGTGTTTATAAT
GTGTATTCATACACTACGCAGTACTTTAAGGAGCCACATTAAAAGGATGG
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Coding sequence (CDS) from alignment at scaffold_19:493806..494855+

>mRNA_7428 ID=mRNA_7428|Name=jgi.p|Nanoce1779_2|135188|organism=Nannochloropsis oceanica|type=CDS|length=804bp|location=Sequence derived from alignment at scaffold_19:493806..494855+ (Nannochloropsis oceanica)
ATGTTGGACGAGGAGGAGGAAGAGGAGGAGGACGAGATCGAGGAGATAGA
CGACGAGGAAAGTAGCAGCTGCTTCTTGACGGAGGCTCGTGATGCTGCAA
TTGGGAGAAGCAGCAATGCAACAAAGCATGACCGTCGTGTCATTGTTCAT
ATCGACCTCGATTGTTTCTACGCCCAATGTGAGATGAGGCACAACCCATC
CCTTCGCGACCGACCCATGGCCATCCAGCAGAAGTACCTCCTCGTCACCT
CCAATCAAGTTGCGCGAAACCAGGGAGTCCACAAAATGCAGGTTTGGCCC
CCTCCCCCACTCCCTCCCTCCTTTTTTCACCCTCCTTTTTTTCCATCCTT
CTCATCCCCGTCTATTTCCTGTGTGCTTTTGACACCCTCATGGATCAATT
GAATGTTGGACGAGGAGGAGGAAGAGGAGGAGGACGAGATCGAGGAGATA
GACGACGAGGAAAGTAGCAGCTGCTTCTTGACGGAGGCTCGTGATGCTGC
AATTGGGAGAAGCAGCAATGCAACAAAGCATGACCGTCGTGTCATTGTTC
ATATCGACCTCGATTGTTTCTACGCCCAATGTGAGATGAGGCACAACCCA
TCCCTTCGCGACCGACCCATGGCCATCCAGCAGAAGTACCTCCTCGTCAC
CTCCAATCAAGTTGCGCGAAACCAGGGAGTCCACAAAATGCAGGTTTGGC
CCCCTCCCCCACTCCCTCCCTCCTTTTTTCACCCTCCTTTTTTTCCATCC
TTCTCATCCCCGTCTATTTCCTGTGTGCTTTTGACACCCTCATGGATCAA
TTGA
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Synonyms
Publications