jgi.p|Nanoce1779_2|598706, mRNA_7423 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598706
Unique NamemRNA_7423
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length457
Alignment locationscaffold_19:474414..475009 +

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Properties
Property NameValue
TranscriptId598792
TrackFilteredModels2
ProteinId598706
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:474414..475009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598706gene_7423Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598706mRNA_7423-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7423CDS_7423Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7423 ID=mRNA_7423|Name=jgi.p|Nanoce1779_2|598706|organism=Nannochloropsis oceanica|type=mRNA|length=457bp
CACCCCCACCAACCAGCGGCGGACCCCGTTGCAAAAACACCCCTTCATTA
CTTCCCTCCCTCCTTCCCTCCTTTGAGCCGGGGGGAGAGCGGCTTCGACT
TCGTTTGCGAGGGGGAGAGCGCCAGTCACGTTCCCTTTCTCCCTTCCCCC
CCCCGTTGCTGTCGCCGCCGTTGGCGTGGTGGTGATGATCATGGTGGCGC
TCACTCCGGTCCCCGTCCCATCGTCGGTCTCCATCCTCTTCTTCCTCCCT
AGTCCCTTTATTCCCTCCATCCTCCTGGTGGTGGTGACGGCGATTCTGCT
GCCTTTCTCCCTCCTTTTGTCCTCCGCCACCTTCGTGCCGTCTGCTTTTG
CTACTACTCCGGTCATCGTCTCCCCTCTCCCGCTCGCCTGACCGGTCCCT
ATGGTGCTCTCTGCGTCTGTCCGCCATATTATTGATTCGCTGTATATAAC
ACCCTGT
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protein sequence of jgi.p|Nanoce1779_2|598706

>mRNA_7423-protein ID=mRNA_7423-protein|Name=jgi.p|Nanoce1779_2|598706|organism=Nannochloropsis oceanica|type=polypeptide|length=69bp
MIMVALTPVPVPSSVSILFFLPSPFIPSILLVVVTAILLPFSLLLSSATF
VPSAFATTPVIVSPLPLA*
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mRNA from alignment at scaffold_19:474414..475009+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7423 ID=mRNA_7423|Name=jgi.p|Nanoce1779_2|598706|organism=Nannochloropsis oceanica|type=mRNA|length=596bp|location=Sequence derived from alignment at scaffold_19:474414..475009+ (Nannochloropsis oceanica)
CACCCCCACCAACCAGCGGCGGACCCCGTTGCAAAAACACCCCTTCATTA
CTTCCCTCCCTCCTTCCCTCCTTTGAGCCGGGGGGAGAGCGGCTTCGACT
TCGTTTGCGAGGGGGAGAGCGCCAGTCACGTTCCCTTTCTCCCTTCCCCC
CCCCGTTGCTGTCGCCGCCGTTGGCGTGGTGGTGATGATCATGGTGGCTG
AAGGGGGGTGTATGGACAGAGAAAGGGTGTAGGTGAGTAAAAATGCACAC
CAAGCCGATATATTTCTCTTCCTCTCCCGTTGCCTGTCTGCCTCCCTGCC
TCCATCAAGCCTCCCTCCCAGCCAGCCTCCACTTACCGCTCACTCCGGTC
CCCGTCCCATCGTCGGTCTCCATCCTCTTCTTCCTCCCTAGTCCCTTTAT
TCCCTCCATCCTCCTGGTGGTGGTGACGGCGATTCTGCTGCCTTTCTCCC
TCCTTTTGTCCTCCGCCACCTTCGTGCCGTCTGCTTTTGCTACTACTCCG
GTCATCGTCTCCCCTCTCCCGCTCGCCTGACCGGTCCCTATGGTGCTCTC
TGCGTCTGTCCGCCATATTATTGATTCGCTGTATATAACACCCTGT
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Coding sequence (CDS) from alignment at scaffold_19:474414..475009+

>mRNA_7423 ID=mRNA_7423|Name=jgi.p|Nanoce1779_2|598706|organism=Nannochloropsis oceanica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_19:474414..475009+ (Nannochloropsis oceanica)
ATGATCATGGTGGCGCTCACTCCGGTCCCCGTCCCATCGTCGGTCTCCAT
CCTCTTCTTCCTCCCTAGTCCCTTTATTCCCTCCATCCTCCTGGTGGTGG
TGACGGCGATTCTGCTGCCTTTCTCCCTCCTTTTGTCCTCCGCCACCTTC
GTGCCGTCTGCTTTTGCTACTACTCCGGTCATCGTCTCCCCTCTCCCGCT
CGCCTGAATGATCATGGTGGCGCTCACTCCGGTCCCCGTCCCATCGTCGG
TCTCCATCCTCTTCTTCCTCCCTAGTCCCTTTATTCCCTCCATCCTCCTG
GTGGTGGTGACGGCGATTCTGCTGCCTTTCTCCCTCCTTTTGTCCTCCGC
CACCTTCGTGCCGTCTGCTTTTGCTACTACTCCGGTCATCGTCTCCCCTC
TCCCGCTCGCCTGA
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Synonyms
Publications