jgi.p|Nanoce1779_2|672725, mRNA_7422 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|672725
Unique NamemRNA_7422
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1056
Alignment locationscaffold_19:472274..473427 -

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Properties
Property NameValue
TranscriptId672811
TrackFilteredModels2
ProteinId672725
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:472274..473427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672725gene_7422Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672725mRNA_7422-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7422CDS_7422Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7422 ID=mRNA_7422|Name=jgi.p|Nanoce1779_2|672725|organism=Nannochloropsis oceanica|type=mRNA|length=1056bp
ATGGGCCGTCGGTCGGCGGACAAGGGGGAGGACGGGGGGGAGGACGGGGG
GGGGGAGGAAGGGTGGGACGCCATGATCACGGCGGCAAGTGTGAAACAGC
GGGAGGCGAACGAGACGGAGAGGAGGGAGGAGGAAAGGAGGGAGGAGGAG
GGGAGGAGGAGGGCGGAGAGAGAGTGGAGATGGAGGGCGAGGATGGAGGA
GGAGAGGGAGGGAGGGAGGGAGGGAGGGAGTGTGTGGGGGGCGTTGAGAG
GCTTGCCATTGCCGTTTGGATTGGTGGGAGATGAACGGCTCGGCCATTTA
ATAAGGATGATTCAGAGTCAAGGGATGGCGTATGACAAGTGGGCCAGACA
GTTAGGAAGGGAGGGGGAGGGTCGTAGTGTGTTGGATGTGTTGAGTGGAC
GTGAGGAGGGGTGGAGGGAGGAAGGGGAGGAGGAGGGTGATGAGGGAGGG
AGAGAGGGGGAAGGATTAGATTTTTGGAATGCCTATCTGTCGGATGCGGA
GGAGGCGGAGGAGGAGGGAGGGAGGGAGGGAGGGGGAGAGGGAGGGGGGG
AGGGGGAAGGGGGTCCCTCAATGTATGACGACTTGGACGAGGAGGCGGAG
AGGGAAGGAGGAAGAGAGGAGAAGGTGGAGGAGATGGTGGCACGGCTTGT
GAAGGGGGGAGGGAGGGAGGGAGGGAGGGTGGTGCTGCCAGGGAGGAGGG
TCGTGGGGGAGGAGGAGAGGAGGAGGGTGGAGGGTCTCTTTGCGGCGGTG
GTGGACTTGGCATCCACCTTGCCGATTTTGCCCTAGGGAGGGAGGGAGGG
GGGGAGGGAGGGAAGGAGGGAGGGCAACCCAAAGCATAACGAAAGGAAAT
AAACTGAACCACACAGCCTAATTAAGCAGGACTCCTTTCGTTCCTTATGT
AGGGTAGTAATTATTAGAGCTTGACCATGGTCATCTTTCCCTCTAGTTCG
CCCTCCAGTCATTCAGTCACCTTCACTTTTCATCAGGGAGGGAGGGAGGG
AGGGAGGGAAGAAACAAAGACAAAAACACCGTCGTCCTCCTCCTCTTATG
CCTTGG
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protein sequence of jgi.p|Nanoce1779_2|672725

>mRNA_7422-protein ID=mRNA_7422-protein|Name=jgi.p|Nanoce1779_2|672725|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MGRRSADKGEDGGEDGGGEEGWDAMITAASVKQREANETERREEERREEE
GRRRAEREWRWRARMEEEREGGREGGSVWGALRGLPLPFGLVGDERLGHL
IRMIQSQGMAYDKWARQLGREGEGRSVLDVLSGREEGWREEGEEEGDEGG
REGEGLDFWNAYLSDAEEAEEEGGREGGGEGGGEGEGGPSMYDDLDEEAE
REGGREEKVEEMVARLVKGGGREGGRVVLPGRRVVGEEERRRVEGLFAAV
VDLASTLPILP*
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mRNA from alignment at scaffold_19:472274..473427-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7422 ID=mRNA_7422|Name=jgi.p|Nanoce1779_2|672725|organism=Nannochloropsis oceanica|type=mRNA|length=1154bp|location=Sequence derived from alignment at scaffold_19:472274..473427- (Nannochloropsis oceanica)
ATGGGCCGTCGGTCGGCGGACAAGGGGGAGGACGGGGGGGAGGACGGGGG
GGGGGAGGAAGGGTGGGACGCCATGATCACGGCGGCAAGTGTGAAACAGC
GGGAGGCGAACGAGACGGAGAGGAGGGAGGAGGAAAGGAGGGAGGAGGAG
GGGAGGAGGAGGGCGGAGAGAGAGTGGAGATGGAGGGCGAGGATGGAGGA
GGAGAGGGAGGGAGGGAGGGAGGGAGGGAGTGTGTGGGGGGCGTTGAGAG
GCTTGCCATTGCCGTTTGGATTGGTGGGAGATGAACGGCTCGGCCATTTA
ATAAGGATGATTCAGAGTCAAGGGATGGCGTATGACAAGTGGGCCAGACA
GTTAGGAAGGGAGGGGGAGGGTCGTAGTGTGTTGGATGTGTTGAGTGGAC
GTGAGGAGGGGTGGAGGGAGGAAGGGGAGGAGGAGGGTGATGAGGGAGGG
AGAGAGGGGGAAGGATTAGATTTTTGGAATGCCTATCTGTCGGATGCGGA
GGAGGCGGAGGAGGAGGGAGGGAGGGAGGGAGGGGGAGAGGGAGGGGGGG
AGGGGGAAGGGGGTCCCTCAATGTATGACGACTTGGACGAGGTGGATGGA
GACGGAGAGAAGGAGGGAGGGGGGGAAGGAGGGGGGAAAGGAGGGGGGGG
GGGGGGGGGGAGGAGGACTTGTATGGTGATTTGGTAGAGGAGGCGGAGAG
GGAAGGAGGAAGAGAGGAGAAGGTGGAGGAGATGGTGGCACGGCTTGTGA
AGGGGGGAGGGAGGGAGGGAGGGAGGGTGGTGCTGCCAGGGAGGAGGGTC
GTGGGGGAGGAGGAGAGGAGGAGGGTGGAGGGTCTCTTTGCGGCGGTGGT
GGACTTGGCATCCACCTTGCCGATTTTGCCCTAGGGAGGGAGGGAGGGGG
GGAGGGAGGGAAGGAGGGAGGGCAACCCAAAGCATAACGAAAGGAAATAA
ACTGAACCACACAGCCTAATTAAGCAGGACTCCTTTCGTTCCTTATGTAG
GGTAGTAATTATTAGAGCTTGACCATGGTCATCTTTCCCTCTAGTTCGCC
CTCCAGTCATTCAGTCACCTTCACTTTTCATCAGGGAGGGAGGGAGGGAG
GGAGGGAAGAAACAAAGACAAAAACACCGTCGTCCTCCTCCTCTTATGCC
TTGG
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Coding sequence (CDS) from alignment at scaffold_19:472274..473427-

>mRNA_7422 ID=mRNA_7422|Name=jgi.p|Nanoce1779_2|672725|organism=Nannochloropsis oceanica|type=CDS|length=1572bp|location=Sequence derived from alignment at scaffold_19:472274..473427- (Nannochloropsis oceanica)
GAGGCGGAGAGGGAAGGAGGAAGAGAGGAGAAGGTGGAGGAGATGGTGGC
ACGGCTTGTGAAGGGGGGAGGGAGGGAGGGAGGGAGGGTGGTGCTGCCAG
GGAGGAGGGTCGTGGGGGAGGAGGAGAGGAGGAGGGTGGAGGGTCTCTTT
GCGGCGGTGGTGGACTTGGCATCCACCTTGCCGATTTTGCCCTAGATGGG
CCGTCGGTCGGCGGACAAGGGGGAGGACGGGGGGGAGGACGGGGGGGGGG
AGGAAGGGTGGGACGCCATGATCACGGCGGCAAGTGTGAAACAGCGGGAG
GCGAACGAGACGGAGAGGAGGGAGGAGGAAAGGAGGGAGGAGGAGGGGAG
GAGGAGGGCGGAGAGAGAGTGGAGATGGAGGGCGAGGATGGAGGAGGAGA
GGGAGGGAGGGAGGGAGGGAGGGAGTGTGTGGGGGGCGTTGAGAGGCTTG
CCATTGCCGTTTGGATTGGTGGGAGATGAACGGCTCGGCCATTTAATAAG
GATGATTCAGAGTCAAGGGATGGCGTATGACAAGTGGGCCAGACAGTTAG
GAAGGGAGGGGGAGGGTCGTAGTGTGTTGGATGTGTTGAGTGGACGTGAG
GAGGGGTGGAGGGAGGAAGGGGAGGAGGAGGGTGATGAGGGAGGGAGAGA
GGGGGAAGGATTAGATTTTTGGAATGCCTATCTGTCGGATGCGGAGGAGG
CGGAGGAGGAGGGAGGGAGGGAGGGAGGGGGAGAGGGAGGGGGGGAGGGG
GAAGGGGGTCCCTCAATGTATGACGACTTGGACGAGGAGGCGGAGAGGGA
AGGAGGAAGAGAGGAGAAGGTGGAGGAGATGGTGGCACGGCTTGTGAAGG
GGGGAGGGAGGGAGGGAGGGAGGGTGGTGCTGCCAGGGAGGAGGGTCGTG
GGGGAGGAGGAGAGGAGGAGGGTGGAGGGTCTCTTTGCGGCGGTGGTGGA
CTTGGCATCCACCTTGCCGATTTTGCCCTAGATGGGCCGTCGGTCGGCGG
ACAAGGGGGAGGACGGGGGGGAGGACGGGGGGGGGGAGGAAGGGTGGGAC
GCCATGATCACGGCGGCAAGTGTGAAACAGCGGGAGGCGAACGAGACGGA
GAGGAGGGAGGAGGAAAGGAGGGAGGAGGAGGGGAGGAGGAGGGCGGAGA
GAGAGTGGAGATGGAGGGCGAGGATGGAGGAGGAGAGGGAGGGAGGGAGG
GAGGGAGGGAGTGTGTGGGGGGCGTTGAGAGGCTTGCCATTGCCGTTTGG
ATTGGTGGGAGATGAACGGCTCGGCCATTTAATAAGGATGATTCAGAGTC
AAGGGATGGCGTATGACAAGTGGGCCAGACAGTTAGGAAGGGAGGGGGAG
GGTCGTAGTGTGTTGGATGTGTTGAGTGGACGTGAGGAGGGGTGGAGGGA
GGAAGGGGAGGAGGAGGGTGATGAGGGAGGGAGAGAGGGGGAAGGATTAG
ATTTTTGGAATGCCTATCTGTCGGATGCGGAGGAGGCGGAGGAGGAGGGA
GGGAGGGAGGGAGGGGGAGAGGGAGGGGGGGAGGGGGAAGGGGGTCCCTC
AATGTATGACGACTTGGACGAG
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Synonyms
Publications