jgi.p|Nanoce1779_2|598700, mRNA_7421 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598700
Unique NamemRNA_7421
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length494
Alignment locationscaffold_19:471593..472411 +

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Properties
Property NameValue
TranscriptId598786
TrackFilteredModels2
ProteinId598700
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:471593..472411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598700gene_7421Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598700mRNA_7421-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7421CDS_7421Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7421 ID=mRNA_7421|Name=jgi.p|Nanoce1779_2|598700|organism=Nannochloropsis oceanica|type=mRNA|length=494bp
AGCCTTATGATTGGCACCACATACCGTCCCATGCACGACGCAGGTCTCCA
GACGTACCCCACGCCCAACACTGAACACGATGAGCGGCGAGCTCCAGCAG
CGTTTTGAGGAAGCAGCCAAGCGCATCGCTGCCTGGAAGCCCGCGGCCAA
GGACCCTAGCGACGAGGAGAAGTTGCTCATCTATGCTTTGTTCAAGCAGT
CTACCGTCGGGGATTGCAACACCCCTAAGCCAGGCCTCCTCGACTTCACC
GGACGGCGTAAACACGGCGCGTGGGAGAAGCAAAAGGGTAAGGACAAGAT
AGCTGCCATGGAGGCTTACATTGCCGAGGTGGAGCGACAGATCAGCACGT
ACGGCACCAAGGCATAAGAGGAGGAGGACGACGGTGTTTTTGTCTTTGTT
TCTTCCCTCCCTCCCTCCCTCCCTCCCTGATGAAAAGTGAAGGTGACTGA
ATGACTGGAGGGCGAACTAGAGGGAAAGATGACCATGGTCAAGC
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protein sequence of jgi.p|Nanoce1779_2|598700

>mRNA_7421-protein ID=mRNA_7421-protein|Name=jgi.p|Nanoce1779_2|598700|organism=Nannochloropsis oceanica|type=polypeptide|length=96bp
MSGELQQRFEEAAKRIAAWKPAAKDPSDEEKLLIYALFKQSTVGDCNTPK
PGLLDFTGRRKHGAWEKQKGKDKIAAMEAYIAEVERQISTYGTKA*
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mRNA from alignment at scaffold_19:471593..472411+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7421 ID=mRNA_7421|Name=jgi.p|Nanoce1779_2|598700|organism=Nannochloropsis oceanica|type=mRNA|length=819bp|location=Sequence derived from alignment at scaffold_19:471593..472411+ (Nannochloropsis oceanica)
AGCCTTATGATTGGCACCACATACCGTCCCATGCACGACGCAGGTCTCCA
GACGTACCCCACGCCCAACACTGAACACGATGAGCGGCGAGCTCCAGCAG
CGTTTTGAGGAAGCAGCCAAGGTGTATATGGGGAGGAGGGAGGGTTTGGA
AAGGAGGGATGACGGGGGGAGGCAGGCTAGGGTGGAACATTTCCTCTGCA
ACCTGCCGCTGCTGCCCCAACTGTCGAGTGGGCCGTAGAGATTGAATGGT
AAGTCCTTGGCTACTCTTCTCTTTCTCACACATACACACATTCACACACC
ACTCTTAGCGCATCGCTGCCTGGAAGCCCGCGGCCAAGGACCCTAGCGAC
GAGGAGAAGTTGCTCATCTATGCTTTGTTCAAGCAGTCTACCGTCGGGGA
TTGCAACACCCCTAAGTAAGTGTTTAAGACCGAGGAGGGGGAAGAGGAGA
TGGATATTTAAGCAGAAGAAGAATGGCTATGATTGAGGATCGCAGGGTCG
TGTGTATGGTCGCTCACTTCTCCTCTCCCCTCTTCCTCTCTCCCACGCCC
CAGGCCAGGCCTCCTCGACTTCACCGGACGGCGTAAACACGGCGCGTGGG
AGAAGCAAAAGGGTAAGGACAAGATAGCTGCCATGGAGGCTTACATTGCC
GAGGTGGAGCGACAGATCAGCACGTACGGCACCAAGGCATAAGAGGAGGA
GGACGACGGTGTTTTTGTCTTTGTTTCTTCCCTCCCTCCCTCCCTCCCTC
CCTGATGAAAAGTGAAGGTGACTGAATGACTGGAGGGCGAACTAGAGGGA
AAGATGACCATGGTCAAGC
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Coding sequence (CDS) from alignment at scaffold_19:471593..472411+

>mRNA_7421 ID=mRNA_7421|Name=jgi.p|Nanoce1779_2|598700|organism=Nannochloropsis oceanica|type=CDS|length=864bp|location=Sequence derived from alignment at scaffold_19:471593..472411+ (Nannochloropsis oceanica)
ATGAGCGGCGAGCTCCAGCAGCGTTTTGAGGAAGCAGCCAAGCGCATCGC
TGCCTGGAAGCCCGCGGCCAAGGACCCTAGCGACGAGGAGAAGTTGCTCA
TCTATGCTTTGTTCAAGCAGTCTACCGTCGGGGATTGCAACACCCCTAAG
CCAGGCCTCCTCGACTTCACCGGACGGCGTAAACACGGCGCGTGGGAGAA
GCAAAAGGGTAAGGACAAGATAGCTGCCATGGAGGCTTACATTGCCGAGG
TGGAGCGACAGATCAGCACGTACGGCACCAAGGCATAAATGAGCGGCGAG
CTCCAGCAGCGTTTTGAGGAAGCAGCCAAGCGCATCGCTGCCTGGAAGCC
CGCGGCCAAGGACCCTAGCGACGAGGAGAAGTTGCTCATCTATGCTTTGT
TCAAGCAGTCTACCGTCGGGGATTGCAACACCCCTAAGCCAGGCCTCCTC
GACTTCACCGGACGGCGTAAACACGGCGCGTGGGAGAAGCAAAAGGGTAA
GGACAAGATAGCTGCCATGGAGGCTTACATTGCCGAGGTGGAGCGACAGA
TCAGCACGTACGGCACCAAGGCATAAATGAGCGGCGAGCTCCAGCAGCGT
TTTGAGGAAGCAGCCAAGCGCATCGCTGCCTGGAAGCCCGCGGCCAAGGA
CCCTAGCGACGAGGAGAAGTTGCTCATCTATGCTTTGTTCAAGCAGTCTA
CCGTCGGGGATTGCAACACCCCTAAGCCAGGCCTCCTCGACTTCACCGGA
CGGCGTAAACACGGCGCGTGGGAGAAGCAAAAGGGTAAGGACAAGATAGC
TGCCATGGAGGCTTACATTGCCGAGGTGGAGCGACAGATCAGCACGTACG
GCACCAAGGCATAA
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Synonyms
Publications