jgi.p|Nanoce1779_2|134674, mRNA_7420 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|134674
Unique NamemRNA_7420
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1043
Alignment locationscaffold_19:469988..471119 +

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Properties
Property NameValue
TranscriptId134760
TrackFilteredModels2
ProteinId134674
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:469988..471119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|134674gene_7420Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|134674mRNA_7420-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7420CDS_7420Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7420 ID=mRNA_7420|Name=jgi.p|Nanoce1779_2|134674|organism=Nannochloropsis oceanica|type=mRNA|length=1043bp
CGGTCGCTTTGTGGCCGTCATTGCCGCCTACTTAGGCATTGTGGGCATTG
CTTTGCCCTCGACCATTATCGGCAAAAGTTTCATCGAGATATACTTCAGG
TAAGGAGGGAGGTCGGTGAAATCTAGCATGTAGAGGACGCATGACATGTT
ATGAAGTAAGTCGTCACACCAGGTGAGGGAGAGTATCTACCTCCTTCGCC
TCATTCCCTCTGATTCCATCGAATCAATACAGAGTTCTCGACGAGCGAAA
GGCCGAGCAGCGGTTGTTGGCTAAAGAGAAGGAACGGGAGATGGAGAGAA
GGGTGGAGGGGGAAGATGTGGGAGGAGGAAGAGGATGTGGGAATTGTTTT
GGATGGGTAACGAAGCAAAGTGGTAACGCGGACGGTCGGAATGAGAGAGG
GAAAACAGCGCCAAACAGATACACGAGGGCCAAACTTCCACGAGAAGAGT
CACAACAAGAGGAAGAACAGATGAAAGGAGGAGGAAGAGGAGGAAGGGAA
AGGAGGGCCTGGTCGAATTTATACAAGAACAAAGATAAAAGTGTGGTGAG
AATGATCCACAAAAGAGAACAACAGATGGCCGCGGAAAAAGCTGAAGAAG
AAGCCCTTGTCCACGAAATTGAAGCACAGCTGAAACACACCACCATGGAA
GAGGTGGAGGAAGCGAGGGAGGCTGGGATGGCGGCGAGGGGGAAGATGAG
GGGTTATTCACCTGCCCCACGTCCTACGTCGGTGCCTAATTCGGGAGGGA
ATACGCCCAGTGGCTACATGCTCGCGTCGATTCATCAGGCGGGCCTTGGT
GCAGTGCAAGCGGCAGCGGCATTGCAGGCTATACCGCTGGCGAGAAAGGT
GCGAAAACAGCAGCAGCAAATAAAGGATCTGACGGCCGTGGTCCGAGAGC
AGCTCCATCAAATCCAAACTCTCACCGAGACGCTGGGCGAGATGGTATGA
AGTGAAAAAGATGAAGGATAGCGGGGTACATATGAAGATGTGCCGACACT
GATTGAGAAATTCCACCACTCACAGGAAAGAGCCACTGTGGTG
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protein sequence of jgi.p|Nanoce1779_2|134674

>mRNA_7420-protein ID=mRNA_7420-protein|Name=jgi.p|Nanoce1779_2|134674|organism=Nannochloropsis oceanica|type=polypeptide|length=220bp
MERRVEGEDVGGGRGCGNCFGWVTKQSGNADGRNERGKTAPNRYTRAKLP
REESQQEEEQMKGGGRGGRERRAWSNLYKNKDKSVVRMIHKREQQMAAEK
AEEEALVHEIEAQLKHTTMEEVEEAREAGMAARGKMRGYSPAPRPTSVPN
SGGNTPSGYMLASIHQAGLGAVQAAAALQAIPLARKVRKQQQQIKDLTAV
VREQLHQIQTLTETLGEMV*
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mRNA from alignment at scaffold_19:469988..471119+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7420 ID=mRNA_7420|Name=jgi.p|Nanoce1779_2|134674|organism=Nannochloropsis oceanica|type=mRNA|length=1132bp|location=Sequence derived from alignment at scaffold_19:469988..471119+ (Nannochloropsis oceanica)
CGGTCGCTTTGTGGCCGTCATTGCCGCCTACTTAGGCATTGTGGGCATTG
CTTTGCCCTCGACCATTATCGGCAAAAGTTTCATCGAGATATACTTCAGG
TAAGGAGGGAGGTCGGTGAAATCTAGCATGTAGAGGACGCATGACATGTT
ATGAAGTAAGTCGTCACACCAGGTGAGGGAGAGTATCTACCTCCTTCGCC
TCATTCCCTCTGATTCCATCGAATCAATACAGAGTTCTCGACGAGCGAAA
GGCCGAGCAGCGGTTGTTGGCTAAAGAGAAGGAACGGGAGATGGAGAGAA
GGGTGGAGGGGGAAGATGTGGGAGGAGGAAGAGGATGTGGGAATTGTTTT
GGATGGGTAACGAAGCAAAGTGGTAACGCGGACGGTCGGAATGAGAGAGG
GAAAACAGCGCCAAACAGATACACGAGGGCCAAACTTCCACGAGAAGAGT
CACAACAAGAGGAAGAACAGATGAAAGGAGGAGGAAGAGGAGGAAGGGAA
AGGAGGGCCTGGTCGAATTTATACAAGAACAAAGATAAAAGTGTGGTGAG
AATGATCCACAAAAGAGAACAACAGATGGCCGCGGAAAAAGCTGAAGAAG
AAGCCCTTGTCCACGAAATTGAAGCACAGCTGAAACACACCACCATGGAA
GAGGTGGAGGAAGCGAGGGAGGCTGGGATGGCGGCGAGGGGGAAGATGAG
GGGTTATTCACCTGCCCCACGTCCTACGTCGGTGCCTAATTCGGGAGGGA
ATACGCCCAGTGGCTACATGCTCGCGTCGATTCATCAGGCGGGCCTTGGT
GCAGTGCAAGCGGCAGCGGCATTGCAGGCTATACCGCTGGCGAGAAAGGT
GGGATTTTCAATTATATATTTATATTTTATTCGATTTATTCTATTTTATT
TATTTATTCATGTCTATTTAATGTAAATAAAAAATAGGTGCGAAAACAGC
AGCAGCAAATAAAGGATCTGACGGCCGTGGTCCGAGAGCAGCTCCATCAA
ATCCAAACTCTCACCGAGACGCTGGGCGAGATGGTATGAAGTGAAAAAGA
TGAAGGATAGCGGGGTACATATGAAGATGTGCCGACACTGATTGAGAAAT
TCCACCACTCACAGGAAAGAGCCACTGTGGTG
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Coding sequence (CDS) from alignment at scaffold_19:469988..471119+

>mRNA_7420 ID=mRNA_7420|Name=jgi.p|Nanoce1779_2|134674|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at scaffold_19:469988..471119+ (Nannochloropsis oceanica)
ATGGAGAGAAGGGTGGAGGGGGAAGATGTGGGAGGAGGAAGAGGATGTGG
GAATTGTTTTGGATGGGTAACGAAGCAAAGTGGTAACGCGGACGGTCGGA
ATGAGAGAGGGAAAACAGCGCCAAACAGATACACGAGGGCCAAACTTCCA
CGAGAAGAGTCACAACAAGAGGAAGAACAGATGAAAGGAGGAGGAAGAGG
AGGAAGGGAAAGGAGGGCCTGGTCGAATTTATACAAGAACAAAGATAAAA
GTGTGGTGAGAATGATCCACAAAAGAGAACAACAGATGGCCGCGGAAAAA
GCTGAAGAAGAAGCCCTTGTCCACGAAATTGAAGCACAGCTGAAACACAC
CACCATGGAAGAGGTGGAGGAAGCGAGGGAGGCTGGGATGGCGGCGAGGG
GGAAGATGAGGGGTTATTCACCTGCCCCACGTCCTACGTCGGTGCCTAAT
TCGGGAGGGAATACGCCCAGTGGCTACATGCTCGCGTCGATTCATCAGGC
GGGCCTTGGTGCAGTGCAAGCGGCAGCGGCATTGCAGGCTATACCGCTGG
CGAGAAAGGTGCGAAAACAGCAGCAGCAAATAAAGGATCTGACGGCCGTG
GTCCGAGAGCAGCTCCATCAAATCCAAACTCTCACCGAGACGCTGGGCGA
GATGGTATGAATGGAGAGAAGGGTGGAGGGGGAAGATGTGGGAGGAGGAA
GAGGATGTGGGAATTGTTTTGGATGGGTAACGAAGCAAAGTGGTAACGCG
GACGGTCGGAATGAGAGAGGGAAAACAGCGCCAAACAGATACACGAGGGC
CAAACTTCCACGAGAAGAGTCACAACAAGAGGAAGAACAGATGAAAGGAG
GAGGAAGAGGAGGAAGGGAAAGGAGGGCCTGGTCGAATTTATACAAGAAC
AAAGATAAAAGTGTGGTGAGAATGATCCACAAAAGAGAACAACAGATGGC
CGCGGAAAAAGCTGAAGAAGAAGCCCTTGTCCACGAAATTGAAGCACAGC
TGAAACACACCACCATGGAAGAGGTGGAGGAAGCGAGGGAGGCTGGGATG
GCGGCGAGGGGGAAGATGAGGGGTTATTCACCTGCCCCACGTCCTACGTC
GGTGCCTAATTCGGGAGGGAATACGCCCAGTGGCTACATGCTCGCGTCGA
TTCATCAGGCGGGCCTTGGTGCAGTGCAAGCGGCAGCGGCATTGCAGGCT
ATACCGCTGGCGAGAAAGGTGCGAAAACAGCAGCAGCAAATAAAGGATCT
GACGGCCGTGGTCCGAGAGCAGCTCCATCAAATCCAAACTCTCACCGAGA
CGCTGGGCGAGATGGTATGA
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Synonyms
Publications