jgi.p|Nanoce1779_2|134631, mRNA_7418 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|134631
Unique Name	mRNA_7418
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1359
Alignment location	scaffold_19:465604..467388 +

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Properties


Property Name	Value
TranscriptId	134717
Track	FilteredModels2
ProteinId	134631

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:465604..467388 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|134631	gene_7418	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|134631	mRNA_7418-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7418	CDS_7418	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:465604..467388+
coding sequence from alignment at scaffold_19:465604..467388+

mRNA sequence

>mRNA_7418 ID=mRNA_7418|Name=jgi.p|Nanoce1779_2|134631|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp
GATGGAGCTGCACAGCATGTCTTCTGCCCTCGATGCATCCCTCTTTCTGT
TTTTCCTCTAGTTACAATCCAAACTTTTTCTGTAACTCGCCATCCCCATC
CCTACGGTCTCGTTGCCTCTCAATCTGATTCTCCTCTTCCCCCTTCCCGC
GCTCTCCTTCACCTCATCCTCCATCATTCACAGGCCACGGTCCAGATCCA
GCGAGAATTAAAGAAAGTCAAGGCTTTTCTATTGCAGCGCCTGGTGAAAA
ATGCCGGAAGCTTCGGGAAGGAGGAGGGGAAGGGAAGAAGGGAAAAGAGG
GATTGAAGGAGAAAGGGGAAAAGGAGGGGGAGGAAAGCGGAGAGGAAGTG
ATGGAGGGACCACAAGAGGACGAAGAGAATGAAGAGAAGGAGAAGAAGAA
GGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGAAGAAGAAGAAGAAGAAGA
AGAAAACCTCCCAGCACAACTCCCACTTCCACTGCAGGCACCCATCCCTC
CTCCTCCCTTCCTTCTCATTCTTCATCAGCACTCTCCGCAGTGCTTGCGG
AGATTCAACAGATTAAAACCATGTTAACTCCTGAAGCATTCACTCCTATA
TGCCTGCGACGCCTCGGAGTCGCTTATACAGGGACAGAGCACGCGGACCT
ATCATCCAAAATAGAGGAGGGAGAGATGAAGGAAGGGAAGGCTGGAGGGG
TAAATCCGTTAGTGCAAGCCATGAGGCACCCGAGGATGATGGCGTTGTTA
AAGGAGTTGGATGGCAGGGTGACCGACATCCGTCGTGGTGGTGATGGCAA
GAAGAACAAGCCAAAAACTGCCAAGCGGCAACGTACTGTCGCCGCGTCCA
ACGGCGATGGGAATGGAAGGCCGCCCAGGTCCCACTATGAGCGACAGGGA
GGGAGGGAGGGAGCAAGAGGAGCAGCTGGAGGAGCACGCCGCGTCACGTC
CTACGATGGATCTTCGGTGTTTGTCGATTCGCTGTCCGGATATGTGTCAA
GGGCGGGGAGGGAGGGAAGGGGGGAGGAGGATGAGATGGATACGTATGGG
TACAAGGAAGCGAAAAAGAATAGGCCGGGACAACGGGCGAGGAGGAAGCG
GTTTGATGCAATGCAAGAGGCACACGCGACTCTACTGCTGCTGCCGGAGC
TCCTCCCCCTTCTGCTGCTGCTGCTGCTGCTGCTTCTGCGAACTTGCACC
CGTCGTGGATTGCCAAGCAGGCTCAAAAGGCAAAGGAGGGTGGAGGGGGT
GTAGGCGTCTTCCAAGGGAAAAAGATAACATTTGGAGATGATGATTAGGA
TAGACAGAGGTGTTTACCAAAAGTTGAACAAAATTAAAGTTTTGACTGAC
AAGAGGAAA

protein sequence of jgi.p|Nanoce1779_2|134631

>mRNA_7418-protein ID=mRNA_7418-protein|Name=jgi.p|Nanoce1779_2|134631|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MKRRRRRRRRRRRRRKKRRRRRRRRKPPSTTPTSTAGTHPSSSLPSHSSS
ALSAVLAEIQQIKTMLTPEAFTPICLRRLGVAYTGTEHADLSSKIEEGEM
KEGKAGGVNPLVQAMRHPRMMALLKELDGRVTDIRRGGDGKKNKPKTAKR
QRTVAASNGDGNGRPPRSHYERQGGREGARGAAGGARRVTSYDGSSVFVD
SLSGYVSRAGREGRGEEDEMDTYGYKEAKKNRPGQRARRKRFDAMQEAHA
TLLLLPELLPLLLLLLLLLLRTCTRRGLPSRLKRQRRVEGV*

mRNA from alignment at scaffold_19:465604..467388+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7418 ID=mRNA_7418|Name=jgi.p|Nanoce1779_2|134631|organism=Nannochloropsis oceanica|type=mRNA|length=1785bp|location=Sequence derived from alignment at scaffold_19:465604..467388+ (Nannochloropsis oceanica)
GATGGAGCTGCACAGCATGTCTTCTGCCCTCGATGCATCCCTCTTTCTGT
TTTTCCTCTAGTTACAATCCAAACTTTTTCTGTAACTCGCCATCCCCATC
CCTACGGTCTCGTTGCCTCTCAATCTGATTCTCCTCTTCCCCCTTCCCGC
GCTCTCCTTCACCTCATCCTCCATCATTCACAGGCCACGGTCCAGATCCA
GCGAGAATTAAAGAAAGTCAAGGCTTTTCTATTGCAGCGCCTGGTGAAAA
ATGCCGGAAGCTTCGGGAAGGAGGAGGGGAAGGGAAGAAGGGAAAAGAGG
GATTGAAGGAGAAAGGGGAAAAGGAGGGGGAGGAAAGCGGAGAGGAAGTG
ATGGAGGGACCACAAGAGGACGAAGAGAATGAAGAGAAGGAGAAGAAGAA
GGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGGGAATATTCAAGGGGGGTAGCGCCCACGAAGAACCTCC
CAGCACAACTCCCACTTCCACTGCAGGCACCCATCCCTCCTCCTCCCTTC
CTTCTCATTCTTCATCAGCACTCTCCGCAGTGCTTGCGGAGATTCAACAG
ATTAAAACCATGTTAACTCCTGAAGCATTCACTCCTATATGCCTGCGACG
CCTCGGAGTCGCTTATACAGGGACAGAGCACGCGGACCTATCATCCAAAA
TAGAGGAGGGAGAGATGAAGGAAGGGAAGGCTGGAGGGGTAAATCCGTTA
GTGCAAGCCATGAGGCACCCGAGGATGATGGCGTTGTTAAAGGAGTTGGA
TGGCAGGTAATGGGGGGAAGAAGGGGTGAAGGAAAGAAAGGAGGAAGGCA
GTCTCGAGAGAAGAATTGACTCAATTTCCGTTTGAGCAGCCCCCCACATT
CATGCGCTCTCCCCTCCACTCCACTCTCATCACTCCAAATCCGTATATAA
CAGGGTGACCGACATCCGTCGTGGTGGTGATGGCAAGAAGAACAAGCCAA
AAACTGCCAAGCGGCAACGTACTGTCGCCGCGTCCAACGGCGATGGGAAT
GGAAGGCCGCCCAGGTCCCACTATGAGCGACAGGGAGGGAGGGAGGGAGC
AAGAGGAGCAGCTGGAGGAGCACGCCGCGTCACGTCCTACGATGGATCTT
CGGTGTTTGTCGATTCGCTGTCCGGATATGTGTCAAGGGCGGGGAGGGAG
GGAAGGGGGGAGGAGGATGAGATGGATACGTATGGGTACAAGGAAGCGAA
AAAGAATAGGCCGGGACAACGGGCGAGGAGGAAGCGGTTTGATGCAATGC
AAGAGGCACACGCGACTGTGAGTGGGGGGGGTAAAGGGGGAGGGAGAGGA
AGAGGGGGAGGGAGAGGAGGAAGAGGGTCAGGGGGAGGGAGAGGCGGGGG
CGGGTTTGATCGAGGCGCACCACGAGGAGGCGGAGTAGAAAGGGAAGGAT
CAACACGGTCGTTCTTTCCCTCTACATCTTCCTCGTTCTTTTCTGCCCCT
TCTGTAGCTACTGCTGCTGCCGGAGCTCCTCCCCCTTCTGCTGCTGCTGC
TGCTGCTGCTTCTGCGAACTTGCACCCGTCGTGGATTGCCAAGCAGGCTC
AAAAGGCAAAGGAGGGTGGAGGGGGTGTAGGCGTCTTCCAAGGGAAAAAG
ATAACATTTGGAGATGATGATTAGGATAGACAGAGGTGTTTACCAAAAGT
TGAACAAAATTAAAGTTTTGACTGACAAGAGGAAA

Coding sequence (CDS) from alignment at scaffold_19:465604..467388+

>mRNA_7418 ID=mRNA_7418|Name=jgi.p|Nanoce1779_2|134631|organism=Nannochloropsis oceanica|type=CDS|length=3504bp|location=Sequence derived from alignment at scaffold_19:465604..467388+ (Nannochloropsis oceanica)
ATGAAGAGAAGGAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGAAGAA
GAGAAGAAGAAGAAGAAGAAGAAGAAAACCTCCCAGCACAACTCCCACTT
CCACTGCAGGCACCCATCCCTCCTCCTCCCTTCCTTCTCATTCTTCATCA
GCACTCTCCGCAGTGCTTGCGGAGATTCAACAGATTAAAACCATGTTAAC
TCCTGAAGCATTCACTCCTATATGCCTGCGACGCCTCGGAGTCGCTTATA
CAGGGACAGAGCACGCGGACCTATCATCCAAAATAGAGGAGGGAGAGATG
AAGGAAGGGAAGGCTGGAGGGGTAAATCCGTTAGTGCAAGCCATGAGGCA
CCCGAGGATGATGGCGTTGTTAAAGGAGTTGGATGGCAGGGTGACCGACA
TCCGTCGTGGTGGTGATGGCAAGAAGAACAAGCCAAAAACTGCCAAGCGG
CAACGTACTGTCGCCGCGTCCAACGGCGATGGGAATGGAAGGCCGCCCAG
GTCCCACTATGAGCGACAGGGAGGGAGGGAGGGAGCAAGAGGAGCAGCTG
GAGGAGCACGCCGCGTCACGTCCTACGATGGATCTTCGGTGTTTGTCGAT
TCGCTGTCCGGATATGTGTCAAGGGCGGGGAGGGAGGGAAGGGGGGAGGA
GGATGAGATGGATACGTATGGGTACAAGGAAGCGAAAAAGAATAGGCCGG
GACAACGGGCGAGGAGGAAGCGGTTTGATGCAATGCAAGAGGCACACGCG
ACTCTACTGCTGCTGCCGGAGCTCCTCCCCCTTCTGCTGCTGCTGCTGCT
GCTGCTTCTGCGAACTTGCACCCGTCGTGGATTGCCAAGCAGGCTCAAAA
GGCAAAGGAGGGTGGAGGGGGTGTAGATGAAGAGAAGGAGAAGAAGAAGG
AGGAGGAGGAGGAGGAGGAGGAAGAAGAGAAGAAGAAGAAGAAGAAGAAG
AAAACCTCCCAGCACAACTCCCACTTCCACTGCAGGCACCCATCCCTCCT
CCTCCCTTCCTTCTCATTCTTCATCAGCACTCTCCGCAGTGCTTGCGGAG
ATTCAACAGATTAAAACCATGTTAACTCCTGAAGCATTCACTCCTATATG
CCTGCGACGCCTCGGAGTCGCTTATACAGGGACAGAGCACGCGGACCTAT
CATCCAAAATAGAGGAGGGAGAGATGAAGGAAGGGAAGGCTGGAGGGGTA
AATCCGTTAGTGCAAGCCATGAGGCACCCGAGGATGATGGCGTTGTTAAA
GGAGTTGGATGGCAGGGTGACCGACATCCGTCGTGGTGGTGATGGCAAGA
AGAACAAGCCAAAAACTGCCAAGCGGCAACGTACTGTCGCCGCGTCCAAC
GGCGATGGGAATGGAAGGCCGCCCAGGTCCCACTATGAGCGACAGGGAGG
GAGGGAGGGAGCAAGAGGAGCAGCTGGAGGAGCACGCCGCGTCACGTCCT
ACGATGGATCTTCGGTGTTTGTCGATTCGCTGTCCGGATATGTGTCAAGG
GCGGGGAGGGAGGGAAGGGGGGAGGAGGATGAGATGGATACGTATGGGTA
CAAGGAAGCGAAAAAGAATAGGCCGGGACAACGGGCGAGGAGGAAGCGGT
TTGATGCAATGCAAGAGGCACACGCGACTCTACTGCTGCTGCCGGAGCTC
CTCCCCCTTCTGCTGCTGCTGCTGCTGCTGCTTCTGCGAACTTGCACCCG
TCGTGGATTGCCAAGCAGGCTCAAAAGGCAAAGGAGGGTGGAGGGGGTGT
AGATGAAGAGAAGGAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGAAG
AAGAGAAGAAGAAGAAGAAGAAGAAGAAAACCTCCCAGCACAACTCCCAC
TTCCACTGCAGGCACCCATCCCTCCTCCTCCCTTCCTTCTCATTCTTCAT
CAGCACTCTCCGCAGTGCTTGCGGAGATTCAACAGATTAAAACCATGTTA
ACTCCTGAAGCATTCACTCCTATATGCCTGCGACGCCTCGGAGTCGCTTA
TACAGGGACAGAGCACGCGGACCTATCATCCAAAATAGAGGAGGGAGAGA
TGAAGGAAGGGAAGGCTGGAGGGGTAAATCCGTTAGTGCAAGCCATGAGG
CACCCGAGGATGATGGCGTTGTTAAAGGAGTTGGATGGCAGGGTGACCGA
CATCCGTCGTGGTGGTGATGGCAAGAAGAACAAGCCAAAAACTGCCAAGC
GGCAACGTACTGTCGCCGCGTCCAACGGCGATGGGAATGGAAGGCCGCCC
AGGTCCCACTATGAGCGACAGGGAGGGAGGGAGGGAGCAAGAGGAGCAGC
TGGAGGAGCACGCCGCGTCACGTCCTACGATGGATCTTCGGTGTTTGTCG
ATTCGCTGTCCGGATATGTGTCAAGGGCGGGGAGGGAGGGAAGGGGGGAG
GAGGATGAGATGGATACGTATGGGTACAAGGAAGCGAAAAAGAATAGGCC
GGGACAACGGGCGAGGAGGAAGCGGTTTGATGCAATGCAAGAGGCACACG
CGACTCTACTGCTGCTGCCGGAGCTCCTCCCCCTTCTGCTGCTGCTGCTG
CTGCTGCTTCTGCGAACTTGCACCCGTCGTGGATTGCCAAGCAGGCTCAA
AAGGCAAAGGAGGGTGGAGGGGGTGTAGATGAAGAGAAGGAGAAGAAGAA
GGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGAAGAAGAAGAAGAAGAAGA
AGAAAACCTCCCAGCACAACTCCCACTTCCACTGCAGGCACCCATCCCTC
CTCCTCCCTTCCTTCTCATTCTTCATCAGCACTCTCCGCAGTGCTTGCGG
AGATTCAACAGATTAAAACCATGTTAACTCCTGAAGCATTCACTCCTATA
TGCCTGCGACGCCTCGGAGTCGCTTATACAGGGACAGAGCACGCGGACCT
ATCATCCAAAATAGAGGAGGGAGAGATGAAGGAAGGGAAGGCTGGAGGGG
TAAATCCGTTAGTGCAAGCCATGAGGCACCCGAGGATGATGGCGTTGTTA
AAGGAGTTGGATGGCAGGGTGACCGACATCCGTCGTGGTGGTGATGGCAA
GAAGAACAAGCCAAAAACTGCCAAGCGGCAACGTACTGTCGCCGCGTCCA
ACGGCGATGGGAATGGAAGGCCGCCCAGGTCCCACTATGAGCGACAGGGA
GGGAGGGAGGGAGCAAGAGGAGCAGCTGGAGGAGCACGCCGCGTCACGTC
CTACGATGGATCTTCGGTGTTTGTCGATTCGCTGTCCGGATATGTGTCAA
GGGCGGGGAGGGAGGGAAGGGGGGAGGAGGATGAGATGGATACGTATGGG
TACAAGGAAGCGAAAAAGAATAGGCCGGGACAACGGGCGAGGAGGAAGCG
GTTTGATGCAATGCAAGAGGCACACGCGACTCTACTGCTGCTGCCGGAGC
TCCTCCCCCTTCTGCTGCTGCTGCTGCTGCTGCTTCTGCGAACTTGCACC
CGTCGTGGATTGCCAAGCAGGCTCAAAAGGCAAAGGAGGGTGGAGGGGGT
GTAG

Synonyms

Publications