jgi.p|Nanoce1779_2|641119, mRNA_7416 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|641119
Unique Name	mRNA_7416
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1326
Alignment location	scaffold_19:461987..463312 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	641205
Track	FilteredModels2
ProteinId	641119

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:461987..463312 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|641119	gene_7416	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|641119	mRNA_7416-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7416	CDS_7416	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:461987..463312+
coding sequence from alignment at scaffold_19:461987..463312+

mRNA sequence

>mRNA_7416 ID=mRNA_7416|Name=jgi.p|Nanoce1779_2|641119|organism=Nannochloropsis oceanica|type=mRNA|length=1326bp
ATGACCGACATTGCCCAGCGGTTGCAAGAGGGCTGGAAACTTACCTCTGA
CATCTGTCCCATACCTGGATGCAAAACCCCCTTGGTCGCCTCCCCTCTCT
CAGATGGTCAGCATTTATTTTGCGTCGCATGTCAAGCCCCAGTCCTGAGG
GAAGGGGAGACCTTACCCCCTCCCTTGAGCGCTGCTGTTCCTCCTGGTAC
TGCGGCTGTTCCTGCCGTTGCTTCTGCCAATCAAGTCTCTTGTTCTCCTC
CTCCCTCCGTCGTGGTGCCACCCACATCGGCCGTCTCAGAAACCCCTGTC
ATTGTCACTCCTTTTTGTACCACACCCACCACTGCTACCACGACCACCAC
CACCATAAGCAGCAGCAGCAGCAGCAGCAACTTCCTCCCTACTCCTCTCA
CCACAACAGACACTGACGCCGCCATCGCCACAGCCGCTGCTGCTCGAACA
GTGCAAGCACGACGCGACGCCGCGTCGTCAATAATCGGACAAAGAATGCT
GAGCGGGTGGACGATGCGTGCCGAGAGTTGTCCCGACTGTCATGTGCCCT
TGATGAGTCAAGGAGGCGGGGAGAAAGGTGGTGTGTGGGAATGCGTGGCG
TGTGGAGGGAGATTTGGGCCGGGAGGGTTGGAGGCGGAAGAAGTGGTGGA
GGAGAAGGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGCGGTGGAGAAAAAGGACGTGAGTGTAGAGATTGGCCAGAGATTG
TTGCAAGGGTGGACGCTACTAGCTGAAGCGTGCATGGAATGTGCGATCCC
CCTCATGAGGGATGGGGAGGGGGAGAATCGCTGCTTGGGCTGTGGTGATG
GACAACAACAGCAGCAGCAGGAGCAGTGGAGTAGAGGAGGGCAGAAGGGA
GTGAAGGAAGAGGACAGGGAGGACGAGCAGGAGGAGGAGAACGATGACGA
GGACGAGGACGAGGAAGCAACAGCTGTACAAGCCGCGCTCATCGCTGCAG
CTTCGCGAGCGACCTCTTCCTCCCTCCCTTCCTCGCCCTTATCCTCCTCA
TTGCCTTCCTCGAAAGCGGTTCCCATGGCACTTGAAGCGATATACCAGCG
GGTCAATGGGTTAGTTAATGTGTTGGAAAGGACGCATGTGGGTGGGTACG
AGGAAACGGCGAGGATTGCCATGGCTTTGACAAGGTTGGGAGAGGCGGCA
GAAGTGATGGAGAGGTGTGTGCAGCAACAGCAGCAGCGGCAGCAGCAGCA
GCAGCAGCAGCAGCTACAGCAGGAGAAGGAGCAGGAAAATGTAAAGGTAC
CGCCTAAGAGGAGTAGGGTTGGCTGA

protein sequence of jgi.p|Nanoce1779_2|641119

>mRNA_7416-protein ID=mRNA_7416-protein|Name=jgi.p|Nanoce1779_2|641119|organism=Nannochloropsis oceanica|type=polypeptide|length=442bp
MTDIAQRLQEGWKLTSDICPIPGCKTPLVASPLSDGQHLFCVACQAPVLR
EGETLPPPLSAAVPPGTAAVPAVASANQVSCSPPPSVVVPPTSAVSETPV
IVTPFCTTPTTATTTTTTISSSSSSSNFLPTPLTTTDTDAAIATAAAART
VQARRDAASSIIGQRMLSGWTMRAESCPDCHVPLMSQGGGEKGGVWECVA
CGGRFGPGGLEAEEVVEEKEEEEEEEEEEEEEEEEAVEKKDVSVEIGQRL
LQGWTLLAEACMECAIPLMRDGEGENRCLGCGDGQQQQQQEQWSRGGQKG
VKEEDREDEQEEENDDEDEDEEATAVQAALIAAASRATSSSLPSSPLSSS
LPSSKAVPMALEAIYQRVNGLVNVLERTHVGGYEETARIAMALTRLGEAA
EVMERCVQQQQQRQQQQQQQQLQQEKEQENVKVPPKRSRVG*

mRNA from alignment at scaffold_19:461987..463312+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7416 ID=mRNA_7416|Name=jgi.p|Nanoce1779_2|641119|organism=Nannochloropsis oceanica|type=mRNA|length=1326bp|location=Sequence derived from alignment at scaffold_19:461987..463312+ (Nannochloropsis oceanica)
ATGACCGACATTGCCCAGCGGTTGCAAGAGGGCTGGAAACTTACCTCTGA
CATCTGTCCCATACCTGGATGCAAAACCCCCTTGGTCGCCTCCCCTCTCT
CAGATGGTCAGCATTTATTTTGCGTCGCATGTCAAGCCCCAGTCCTGAGG
GAAGGGGAGACCTTACCCCCTCCCTTGAGCGCTGCTGTTCCTCCTGGTAC
TGCGGCTGTTCCTGCCGTTGCTTCTGCCAATCAAGTCTCTTGTTCTCCTC
CTCCCTCCGTCGTGGTGCCACCCACATCGGCCGTCTCAGAAACCCCTGTC
ATTGTCACTCCTTTTTGTACCACACCCACCACTGCTACCACGACCACCAC
CACCATAAGCAGCAGCAGCAGCAGCAGCAACTTCCTCCCTACTCCTCTCA
CCACAACAGACACTGACGCCGCCATCGCCACAGCCGCTGCTGCTCGAACA
GTGCAAGCACGACGCGACGCCGCGTCGTCAATAATCGGACAAAGAATGCT
GAGCGGGTGGACGATGCGTGCCGAGAGTTGTCCCGACTGTCATGTGCCCT
TGATGAGTCAAGGAGGCGGGGAGAAAGGTGGTGTGTGGGAATGCGTGGCG
TGTGGAGGGAGATTTGGGCCGGGAGGGTTGGAGGCGGAAGAAGTGGTGGA
GGAGAAGGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGCGGTGGAGAAAAAGGACGTGAGTGTAGAGATTGGCCAGAGATTG
TTGCAAGGGTGGACGCTACTAGCTGAAGCGTGCATGGAATGTGCGATCCC
CCTCATGAGGGATGGGGAGGGGGAGAATCGCTGCTTGGGCTGTGGTGATG
GACAACAACAGCAGCAGCAGGAGCAGTGGAGTAGAGGAGGGCAGAAGGGA
GTGAAGGAAGAGGACAGGGAGGACGAGCAGGAGGAGGAGAACGATGACGA
GGACGAGGACGAGGAAGCAACAGCTGTACAAGCCGCGCTCATCGCTGCAG
CTTCGCGAGCGACCTCTTCCTCCCTCCCTTCCTCGCCCTTATCCTCCTCA
TTGCCTTCCTCGAAAGCGGTTCCCATGGCACTTGAAGCGATATACCAGCG
GGTCAATGGGTTAGTTAATGTGTTGGAAAGGACGCATGTGGGTGGGTACG
AGGAAACGGCGAGGATTGCCATGGCTTTGACAAGGTTGGGAGAGGCGGCA
GAAGTGATGGAGAGGTGTGTGCAGCAACAGCAGCAGCGGCAGCAGCAGCA
GCAGCAGCAGCAGCTACAGCAGGAGAAGGAGCAGGAAAATGTAAAGGTAC
CGCCTAAGAGGAGTAGGGTTGGCTGA

Coding sequence (CDS) from alignment at scaffold_19:461987..463312+

>mRNA_7416 ID=mRNA_7416|Name=jgi.p|Nanoce1779_2|641119|organism=Nannochloropsis oceanica|type=CDS|length=1326bp|location=Sequence derived from alignment at scaffold_19:461987..463312+ (Nannochloropsis oceanica)
ATGACCGACATTGCCCAGCGGTTGCAAGAGGGCTGGAAACTTACCTCTGA
CATCTGTCCCATACCTGGATGCAAAACCCCCTTGGTCGCCTCCCCTCTCT
CAGATGGTCAGCATTTATTTTGCGTCGCATGTCAAGCCCCAGTCCTGAGG
GAAGGGGAGACCTTACCCCCTCCCTTGAGCGCTGCTGTTCCTCCTGGTAC
TGCGGCTGTTCCTGCCGTTGCTTCTGCCAATCAAGTCTCTTGTTCTCCTC
CTCCCTCCGTCGTGGTGCCACCCACATCGGCCGTCTCAGAAACCCCTGTC
ATTGTCACTCCTTTTTGTACCACACCCACCACTGCTACCACGACCACCAC
CACCATAAGCAGCAGCAGCAGCAGCAGCAACTTCCTCCCTACTCCTCTCA
CCACAACAGACACTGACGCCGCCATCGCCACAGCCGCTGCTGCTCGAACA
GTGCAAGCACGACGCGACGCCGCGTCGTCAATAATCGGACAAAGAATGCT
GAGCGGGTGGACGATGCGTGCCGAGAGTTGTCCCGACTGTCATGTGCCCT
TGATGAGTCAAGGAGGCGGGGAGAAAGGTGGTGTGTGGGAATGCGTGGCG
TGTGGAGGGAGATTTGGGCCGGGAGGGTTGGAGGCGGAAGAAGTGGTGGA
GGAGAAGGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGCGGTGGAGAAAAAGGACGTGAGTGTAGAGATTGGCCAGAGATTG
TTGCAAGGGTGGACGCTACTAGCTGAAGCGTGCATGGAATGTGCGATCCC
CCTCATGAGGGATGGGGAGGGGGAGAATCGCTGCTTGGGCTGTGGTGATG
GACAACAACAGCAGCAGCAGGAGCAGTGGAGTAGAGGAGGGCAGAAGGGA
GTGAAGGAAGAGGACAGGGAGGACGAGCAGGAGGAGGAGAACGATGACGA
GGACGAGGACGAGGAAGCAACAGCTGTACAAGCCGCGCTCATCGCTGCAG
CTTCGCGAGCGACCTCTTCCTCCCTCCCTTCCTCGCCCTTATCCTCCTCA
TTGCCTTCCTCGAAAGCGGTTCCCATGGCACTTGAAGCGATATACCAGCG
GGTCAATGGGTTAGTTAATGTGTTGGAAAGGACGCATGTGGGTGGGTACG
AGGAAACGGCGAGGATTGCCATGGCTTTGACAAGGTTGGGAGAGGCGGCA
GAAGTGATGGAGAGGTGTGTGCAGCAACAGCAGCAGCGGCAGCAGCAGCA
GCAGCAGCAGCAGCTACAGCAGGAGAAGGAGCAGGAAAATGTAAAGGTAC
CGCCTAAGAGGAGTAGGGTTGGCTGA

Synonyms

Publications