jgi.p|Nanoce1779_2|598675, mRNA_7415 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598675
Unique NamemRNA_7415
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length749
Alignment locationscaffold_19:459610..461422 -

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Properties
Property NameValue
TranscriptId598761
TrackFilteredModels2
ProteinId598675
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:459610..461422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598675gene_7415Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598675mRNA_7415-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7415CDS_7415Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7415 ID=mRNA_7415|Name=jgi.p|Nanoce1779_2|598675|organism=Nannochloropsis oceanica|type=mRNA|length=749bp
TGGCGACAGCAGCAGTTATCGTTCTAGGTGGGGCTGCCGCTGCGTTGTAC
CTGAGCAGGAAGAAGAAAAAGGCGGAGAAGCGACTCAAATATGAAATTGT
CTTCGTCCTCGGCGGCCCTGGCGCGGGCAAGGGCACGCAATGTGCCCTCC
TAGTGGAACGTCACGGCCTCGTCCACCTGTCTGCTGGCGACTTGTTAAGA
GAGGAAAGGAACAGGGGGACGGAGCTCGCGACGATGATTAATACGTACAT
TCAGGAGGGGAAAATCGTCCCTGCTGAGGTGACGGTGGGATTACTAAGGG
CGGCGATGGAGAAGGCGGAGGGCAAGACCAAGTTCCTCATCGATGGCTTT
CCCCGGGACCCGGGTAATCTCAGGTGCTGGATCGAGAACATGAGCGACCA
CGCGCACACCAAGGCCGTCCTCTACCTTAATGCTCCCGAGGAGGTGATGC
TTCAGCGGCTCCTAGAGCGAGGGAAGACCAGCGGCAGGACCGACGACAAC
GCTGACAGCATCAAGAAACGCTTCAAAACCTACCTAGAGAGCACCATGCC
CATTATTCAACATTTCCAAGCACAGGGGAAAGTGTGGGAGGTTCAAGCTG
ACAGACCCCTCGGCGAAGTGTCTGCCGACGTATTTGCTCGGTTTGACACA
TGGTAAGGGGGAGGGAGAGAGGGAGGGAGAGCGAGAAACATCAAGAGAGA
AAGATAGCAAGAAACAGCGAGAGGGAGTATTTGTTTTATACTTGGGAGG
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protein sequence of jgi.p|Nanoce1779_2|598675

>mRNA_7415-protein ID=mRNA_7415-protein|Name=jgi.p|Nanoce1779_2|598675|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MINTYIQEGKIVPAEVTVGLLRAAMEKAEGKTKFLIDGFPRDPGNLRCWI
ENMSDHAHTKAVLYLNAPEEVMLQRLLERGKTSGRTDDNADSIKKRFKTY
LESTMPIIQHFQAQGKVWEVQADRPLGEVSADVFARFDTW*
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mRNA from alignment at scaffold_19:459610..461422-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7415 ID=mRNA_7415|Name=jgi.p|Nanoce1779_2|598675|organism=Nannochloropsis oceanica|type=mRNA|length=1813bp|location=Sequence derived from alignment at scaffold_19:459610..461422- (Nannochloropsis oceanica)
TGGCGACAGCAGCAGTTATCGTTCTAGGTGGGGCTGCCGCTGCGTTGTAC
CTGAGCAGGAAGAAGAAAAAGGCGGAGAAGCGACTGTACGTGCCATTGTA
TAGGGAGGGAGGTGTGGAGTCAGGTGGGACAGGAGGCTAGGAAATGCTTC
CTGCGACTTCGGTTCAGAGGGAGGCATGTATGTGGCAAGAGTGCCTCGCG
GCAAACGGCCAGAGTGGCCTTGTTTTGCCCGCTTGCTTGCTTGTCTGAAG
ATAGAGGGGTGTGTCGCTATATATACGCCAGCCTTGCGAGCGGGACGGAG
GCATCGTCTACCCACGTGGCTGGGTCATGCATTTCTCGCCTCACACTTCA
TTTCATCCCTTCCTTCCTCCCTCCCTCCCTCCCTCTCTCCCTCTGGTTCA
TCCCCGACCCAAACAACCAGCAAATATGAAATTGTCTTCGTCCTCGGCGG
CCCTGGCGCGGGCAAGGGCACGCAATGTGCCCTCCTAGTGGAACGTCACG
GCCTCGTCCACCTGTCTGCTGGCGACTTGTTAAGAGAGGAAAGGAACAGG
GGGACGGAGCTCGCGACGATGATTAATACGTACATTCAGGAGGGGAAAAT
CGTCCCTGCTGAGGTGACGGTGGGATTACTAAGGTAGGAAGGGAGGGAGG
GAAGGAGGGGAGGAGTGAGGGAGGGGGGGATTTAGGAGAAGTCAATATGA
TGCTAAAGAGGAAATTAATGAGTCACCCCTCCTTCTCTCCCTTCCTCCTC
CTCCTCCTTTCTCTCCCTCAACCACATACAGGGCGGCGATGGAGAAGGCG
GAGGGCAAGACCAAGTTCCTCATCGATGGCTTTCCCCGGGACCCGGGTAA
TCTCAGGTAAGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGCAAGTGAGAAACATCTAGAAGGCACAGATGGTGCGG
AGCATTCCCTGAGGGAAGAGGGAAAGAAAGAGGGAGGAAGTGAGAGAGAG
AAAGAGAGAAGGAGAGAAGGGAGCCATCAAGAATATAAAAGAAAAGTTGC
CATAATACTGATCCATCCTTCCCTCCCTCCCTCCCTTCCTTCCTTCAGGT
GCTGGATCGAGAACATGAGCGACCACGCGCACACCAAGGCCGTCCTCTAC
CTTAATGCTCCCGAGGAGGTGATGCTTCAGCGGCTCCTAGAGCGAGGGAA
GACCAGCGGCAGGACCGACGACAACGCTGACAGCATCAAGAAACGGTTAA
GGCCCCTCCCTCCCTCCCTCCCTCGCAGCCTCCTTCCCTTGCTTCCCCCT
TCTGTCCATTCCTCTCCACCTTGGGCTCAGCAACCACTCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCCCCCCAGCTTCAAAAC
CTACCTAGAGAGCACCATGCCCATTATTCAACATTTCCAAGCACAGGGGA
AAGTGTGGGAGGTTCAAGCTGACAGACCCCTCGGTACGTCCCCCCCTCTA
TCTTTCCCCTCCCTTCCTCCCCTCCTTCCCACGATCCTTCCCTTGTTTTG
TTGTGAGCAGAGAAGGGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAG
GAGAAAGAGGACATGGCGGCCTTGTCAGGGGTAGTTGCTCTCTCTTACAT
CCTCCCCTCCCTCCCTCCCTCGACAGGCGAAGTGTCTGCCGACGTATTTG
CTCGGTTTGACACATGGTAAGGGGGAGGGAGAGAGGGAGGGAGAGCGAGA
AACATCAAGAGAGAAAGATAGCAAGAAACAGCGAGAGGGAGTATTTGTTT
TATACTTGGGAGG
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Coding sequence (CDS) from alignment at scaffold_19:459610..461422-

>mRNA_7415 ID=mRNA_7415|Name=jgi.p|Nanoce1779_2|598675|organism=Nannochloropsis oceanica|type=CDS|length=2115bp|location=Sequence derived from alignment at scaffold_19:459610..461422- (Nannochloropsis oceanica)
GCGAAGTGTCTGCCGACGTATTTGCTCGGTTTGACACATGGTAACTTCAA
AACCTACCTAGAGAGCACCATGCCCATTATTCAACATTTCCAAGCACAGG
GGAAAGTGTGGGAGGTTCAAGCTGACAGACCCCTCGGTGCTGGATCGAGA
ACATGAGCGACCACGCGCACACCAAGGCCGTCCTCTACCTTAATGCTCCC
GAGGAGGTGATGCTTCAGCGGCTCCTAGAGCGAGGGAAGACCAGCGGCAG
GACCGACGACAACGCTGACAGCATCAAGAAACGGGCGGCGATGGAGAAGG
CGGAGGGCAAGACCAAGTTCCTCATCGATGGCTTTCCCCGGGACCCGGGT
AATCTCAGATGATTAATACGTACATTCAGGAGGGGAAAATCGTCCCTGCT
GAGGTGACGGTGGGATTACTAAGGCGAAGTGTCTGCCGACGTATTTGCTC
GGTTTGACACATGGTAACTTCAAAACCTACCTAGAGAGCACCATGCCCAT
TATTCAACATTTCCAAGCACAGGGGAAAGTGTGGGAGGTTCAAGCTGACA
GACCCCTCGGTGCTGGATCGAGAACATGAGCGACCACGCGCACACCAAGG
CCGTCCTCTACCTTAATGCTCCCGAGGAGGTGATGCTTCAGCGGCTCCTA
GAGCGAGGGAAGACCAGCGGCAGGACCGACGACAACGCTGACAGCATCAA
GAAACGGGCGGCGATGGAGAAGGCGGAGGGCAAGACCAAGTTCCTCATCG
ATGGCTTTCCCCGGGACCCGGGTAATCTCAGATGATTAATACGTACATTC
AGGAGGGGAAAATCGTCCCTGCTGAGGTGACGGTGGGATTACTAAGGCGA
AGTGTCTGCCGACGTATTTGCTCGGTTTGACACATGGTAACTTCAAAACC
TACCTAGAGAGCACCATGCCCATTATTCAACATTTCCAAGCACAGGGGAA
AGTGTGGGAGGTTCAAGCTGACAGACCCCTCGGTGCTGGATCGAGAACAT
GAGCGACCACGCGCACACCAAGGCCGTCCTCTACCTTAATGCTCCCGAGG
AGGTGATGCTTCAGCGGCTCCTAGAGCGAGGGAAGACCAGCGGCAGGACC
GACGACAACGCTGACAGCATCAAGAAACGGGCGGCGATGGAGAAGGCGGA
GGGCAAGACCAAGTTCCTCATCGATGGCTTTCCCCGGGACCCGGGTAATC
TCAGATGATTAATACGTACATTCAGGAGGGGAAAATCGTCCCTGCTGAGG
TGACGGTGGGATTACTAAGGCGAAGTGTCTGCCGACGTATTTGCTCGGTT
TGACACATGGTAACTTCAAAACCTACCTAGAGAGCACCATGCCCATTATT
CAACATTTCCAAGCACAGGGGAAAGTGTGGGAGGTTCAAGCTGACAGACC
CCTCGGTGCTGGATCGAGAACATGAGCGACCACGCGCACACCAAGGCCGT
CCTCTACCTTAATGCTCCCGAGGAGGTGATGCTTCAGCGGCTCCTAGAGC
GAGGGAAGACCAGCGGCAGGACCGACGACAACGCTGACAGCATCAAGAAA
CGGGCGGCGATGGAGAAGGCGGAGGGCAAGACCAAGTTCCTCATCGATGG
CTTTCCCCGGGACCCGGGTAATCTCAGATGATTAATACGTACATTCAGGA
GGGGAAAATCGTCCCTGCTGAGGTGACGGTGGGATTACTAAGGCGAAGTG
TCTGCCGACGTATTTGCTCGGTTTGACACATGGTAACTTCAAAACCTACC
TAGAGAGCACCATGCCCATTATTCAACATTTCCAAGCACAGGGGAAAGTG
TGGGAGGTTCAAGCTGACAGACCCCTCGGTGCTGGATCGAGAACATGAGC
GACCACGCGCACACCAAGGCCGTCCTCTACCTTAATGCTCCCGAGGAGGT
GATGCTTCAGCGGCTCCTAGAGCGAGGGAAGACCAGCGGCAGGACCGACG
ACAACGCTGACAGCATCAAGAAACGGGCGGCGATGGAGAAGGCGGAGGGC
AAGACCAAGTTCCTCATCGATGGCTTTCCCCGGGACCCGGGTAATCTCAG
ATGATTAATACGTACATTCAGGAGGGGAAAATCGTCCCTGCTGAGGTGAC
GGTGGGATTACTAAG
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Synonyms
Publications