jgi.p|Nanoce1779_2|598664, mRNA_7411 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598664
Unique NamemRNA_7411
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length532
Alignment locationscaffold_19:448328..448859 +

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Properties
Property NameValue
TranscriptId598750
TrackFilteredModels2
ProteinId598664
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:448328..448859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598664gene_7411Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598664mRNA_7411-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7411CDS_7411Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7411 ID=mRNA_7411|Name=jgi.p|Nanoce1779_2|598664|organism=Nannochloropsis oceanica|type=mRNA|length=532bp
CATCATCATGCCCTCCCTCTCACGGCGCCTCCTCATAACCATCCCCCGGC
GACTCAACTCCTCCTCCTCCTCTTCCTCCTCCTCGATTCCACGTCCTGCC
ATACCATCACCGGCACCACCGAATCAGGAACTTCTGGGTCTGCTCGTATG
TCCGCTCACCAAGGAACCGCTCCGTCATGATGTGGCCAAGGGCACGCTTA
TTTCGGAAGGCATCAATGTCTCCTTCCCCATCACGCCCTTGGGCCTCCCC
AACCTCCTACCCTACGAGGCAACCATCTTGGACGGGCAGGAAGGGGAGGA
TGAGGGAGAGGAAGTGAGTAACAGAAAGGCGGGAGGAGATGAGAAGGTGT
GAAATCAAATGAAGGCATCGATGTCTCCTTCCCCGTCACGGCCTTGGGTC
TCCCCAATGTCCTTCTCGGTTGGAGACGACTGTCTCTGAGGAGGCATGAG
GAAGAGGAGGGGAAAGACTGACAACGAACGGTGAGACTATAAAGAACTAA
CAAAGCGTGTATACACAGAATCGTTGGGCTTA
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protein sequence of jgi.p|Nanoce1779_2|598664

>mRNA_7411-protein ID=mRNA_7411-protein|Name=jgi.p|Nanoce1779_2|598664|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MPSLSRRLLITIPRRLNSSSSSSSSSIPRPAIPSPAPPNQELLGLLVCPL
TKEPLRHDVAKGTLISEGINVSFPITPLGLPNLLPYEATILDGQEGEDEG
EEVSNRKAGGDEKV*
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mRNA from alignment at scaffold_19:448328..448859+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7411 ID=mRNA_7411|Name=jgi.p|Nanoce1779_2|598664|organism=Nannochloropsis oceanica|type=mRNA|length=532bp|location=Sequence derived from alignment at scaffold_19:448328..448859+ (Nannochloropsis oceanica)
CATCATCATGCCCTCCCTCTCACGGCGCCTCCTCATAACCATCCCCCGGC
GACTCAACTCCTCCTCCTCCTCTTCCTCCTCCTCGATTCCACGTCCTGCC
ATACCATCACCGGCACCACCGAATCAGGAACTTCTGGGTCTGCTCGTATG
TCCGCTCACCAAGGAACCGCTCCGTCATGATGTGGCCAAGGGCACGCTTA
TTTCGGAAGGCATCAATGTCTCCTTCCCCATCACGCCCTTGGGCCTCCCC
AACCTCCTACCCTACGAGGCAACCATCTTGGACGGGCAGGAAGGGGAGGA
TGAGGGAGAGGAAGTGAGTAACAGAAAGGCGGGAGGAGATGAGAAGGTGT
GAAATCAAATGAAGGCATCGATGTCTCCTTCCCCGTCACGGCCTTGGGTC
TCCCCAATGTCCTTCTCGGTTGGAGACGACTGTCTCTGAGGAGGCATGAG
GAAGAGGAGGGGAAAGACTGACAACGAACGGTGAGACTATAAAGAACTAA
CAAAGCGTGTATACACAGAATCGTTGGGCTTA
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Coding sequence (CDS) from alignment at scaffold_19:448328..448859+

>mRNA_7411 ID=mRNA_7411|Name=jgi.p|Nanoce1779_2|598664|organism=Nannochloropsis oceanica|type=CDS|length=345bp|location=Sequence derived from alignment at scaffold_19:448328..448859+ (Nannochloropsis oceanica)
ATGCCCTCCCTCTCACGGCGCCTCCTCATAACCATCCCCCGGCGACTCAA
CTCCTCCTCCTCCTCTTCCTCCTCCTCGATTCCACGTCCTGCCATACCAT
CACCGGCACCACCGAATCAGGAACTTCTGGGTCTGCTCGTATGTCCGCTC
ACCAAGGAACCGCTCCGTCATGATGTGGCCAAGGGCACGCTTATTTCGGA
AGGCATCAATGTCTCCTTCCCCATCACGCCCTTGGGCCTCCCCAACCTCC
TACCCTACGAGGCAACCATCTTGGACGGGCAGGAAGGGGAGGATGAGGGA
GAGGAAGTGAGTAACAGAAAGGCGGGAGGAGATGAGAAGGTGTGA
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Synonyms
Publications