jgi.p|Nanoce1779_2|598660, mRNA_7410 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598660
Unique NamemRNA_7410
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length341
Alignment locationscaffold_19:446516..446856 +

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Properties
Property NameValue
TranscriptId598746
TrackFilteredModels2
ProteinId598660
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:446516..446856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598660gene_7410Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598660mRNA_7410-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7410CDS_7410Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7410 ID=mRNA_7410|Name=jgi.p|Nanoce1779_2|598660|organism=Nannochloropsis oceanica|type=mRNA|length=341bp
GAGGTGGAGGTACACGGCGAGGAGATGCTGCTGTTGGTGGATTCATCGTC
CTATGATTGGCAAAAGGTGGGAGGAAGGAAAGGAGGAAGGGACGGAGGGA
GGGCGAGAGTATGTTTGGGTGCGTGATTGATTCGAAGCGACGACAGTCAC
GTTTTATTATTTTGTTGTGGTTGCTCAGGTGGCATGGTCACGTGTCTGAT
CCGTGTGAAGGGAGAGAGAGTCGACAGCAAGGAGAAATATTGTGTGTAGT
AGGTACTCAGAGAGAGCAGGGAGGGAGGGAGAGAGAGAGGACAGACAGGC
AGGCAGGCAGGCAGGCAGGCAGGTAAGAAGCAACAGCGCAT
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protein sequence of jgi.p|Nanoce1779_2|598660

>mRNA_7410-protein ID=mRNA_7410-protein|Name=jgi.p|Nanoce1779_2|598660|organism=Nannochloropsis oceanica|type=polypeptide|length=72bp
MFGCVIDSKRRQSRFIILLWLLRWHGHVSDPCEGRESRQQGEILCVVGTQ
REQGGRERERTDRQAGRQAGR*
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mRNA from alignment at scaffold_19:446516..446856+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7410 ID=mRNA_7410|Name=jgi.p|Nanoce1779_2|598660|organism=Nannochloropsis oceanica|type=mRNA|length=341bp|location=Sequence derived from alignment at scaffold_19:446516..446856+ (Nannochloropsis oceanica)
GAGGTGGAGGTACACGGCGAGGAGATGCTGCTGTTGGTGGATTCATCGTC
CTATGATTGGCAAAAGGTGGGAGGAAGGAAAGGAGGAAGGGACGGAGGGA
GGGCGAGAGTATGTTTGGGTGCGTGATTGATTCGAAGCGACGACAGTCAC
GTTTTATTATTTTGTTGTGGTTGCTCAGGTGGCATGGTCACGTGTCTGAT
CCGTGTGAAGGGAGAGAGAGTCGACAGCAAGGAGAAATATTGTGTGTAGT
AGGTACTCAGAGAGAGCAGGGAGGGAGGGAGAGAGAGAGGACAGACAGGC
AGGCAGGCAGGCAGGCAGGCAGGTAAGAAGCAACAGCGCAT
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Coding sequence (CDS) from alignment at scaffold_19:446516..446856+

>mRNA_7410 ID=mRNA_7410|Name=jgi.p|Nanoce1779_2|598660|organism=Nannochloropsis oceanica|type=CDS|length=216bp|location=Sequence derived from alignment at scaffold_19:446516..446856+ (Nannochloropsis oceanica)
ATGTTTGGGTGCGTGATTGATTCGAAGCGACGACAGTCACGTTTTATTAT
TTTGTTGTGGTTGCTCAGGTGGCATGGTCACGTGTCTGATCCGTGTGAAG
GGAGAGAGAGTCGACAGCAAGGAGAAATATTGTGTGTAGTAGGTACTCAG
AGAGAGCAGGGAGGGAGGGAGAGAGAGAGGACAGACAGGCAGGCAGGCAG
GCAGGCAGGCAGGTAA
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Synonyms
Publications