jgi.p|Nanoce1779_2|134468, mRNA_7409 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|134468
Unique NamemRNA_7409
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length931
Alignment locationscaffold_19:445650..446580 +

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Properties
Property NameValue
TranscriptId134554
TrackFilteredModels2
ProteinId134468
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:445650..446580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|134468gene_7409Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|134468mRNA_7409-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7409CDS_7409Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7409 ID=mRNA_7409|Name=jgi.p|Nanoce1779_2|134468|organism=Nannochloropsis oceanica|type=mRNA|length=931bp
GGAAACGGCCTGAGGGTAAGAGGGAGGGAGGGAGTGAGACGATGATGATG
GGACAGCCATTCCTGTATTAGAACAGGAAAGAAAACGAGGGAGGGAGGGA
GGGAGGACATGCCCACTTACCATAGACAGGGTCCCGGGTGGCGGCCGAGA
AATGCCAACAGCTCGCAAAGCCTGTCACGGCGAGTTTTGTCAACCACCGT
CCTTCGTTCCCCACCCCCTGCTGCATCACGCTCATCTGGCCATAGGAACA
AAAGAGACGGAAGCCGCCTTTTCGGTCGAAGATCTCGACACTTAATGTGT
ACTGGCTTCCCCACCCCACCCCTCCCTCCCTCCCGCTTGCCCGCCCGCTT
CCTGTCCCTCCACTCATCCTCCTCCCTATCCCTGCCCTACTCATGCAGCG
GCCGTTCCTCAGACAGAATTCCCTCCACTCCCCTCCTCCTTCCCTCCCTC
CCTCCTCCTCCCCGTCCTCCATTTTCAGGGACGGTAGCAGCTCCACAGGC
CCGCCCTTCAGGCTCTTCAGCCATGGCCAGCGTGCGATGCACAACGGTTT
CCATAATTGGTCGCTTCCTGCGAGATCTCGCCATTGCTTGCTGACGAGTG
AGAGGGTTCCGAGTTGTCTCCGTCCGTCCGTCCCGTCGGTGTAACTGGGC
CTGCCCGACCAGACGAAATCGAAGATGTGGAGGAGGAGGGAGGAAGGAAG
GGAGGACAGGGTGATGGGTTGACGAGAAGAGGAGGGGGTGGTGGAGTAGG
AGGAAGAATGGCTTCGTTTGACAGGGAGATGGGCCGAGGAGGAGGAGGAG
GAGGAGGAGGAAGAGGAAGAGGAGGAAGGTAGGGAGAGGGGTCGGCGGCG
GTGCGTCAAAGAGAGGGAGGTGGAGGTACACGGCGAGGAGATGCTGCTGT
TGGTGGATTCATCGTCCTATGATTGGCAAAA
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protein sequence of jgi.p|Nanoce1779_2|134468

>mRNA_7409-protein ID=mRNA_7409-protein|Name=jgi.p|Nanoce1779_2|134468|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MPTYHRQGPGWRPRNANSSQSLSRRVLSTTVLRSPPPAASRSSGHRNKRD
GSRLFGRRSRHLMCTGFPTPPLPPSRLPARFLSLHSSSSLSLPYSCSGRS
SDRIPSTPLLLPSLPPPPRPPFSGTVAAPQARPSGSSAMASVRCTTVSII
GRFLRDLAIAC*
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mRNA from alignment at scaffold_19:445650..446580+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7409 ID=mRNA_7409|Name=jgi.p|Nanoce1779_2|134468|organism=Nannochloropsis oceanica|type=mRNA|length=931bp|location=Sequence derived from alignment at scaffold_19:445650..446580+ (Nannochloropsis oceanica)
GGAAACGGCCTGAGGGTAAGAGGGAGGGAGGGAGTGAGACGATGATGATG
GGACAGCCATTCCTGTATTAGAACAGGAAAGAAAACGAGGGAGGGAGGGA
GGGAGGACATGCCCACTTACCATAGACAGGGTCCCGGGTGGCGGCCGAGA
AATGCCAACAGCTCGCAAAGCCTGTCACGGCGAGTTTTGTCAACCACCGT
CCTTCGTTCCCCACCCCCTGCTGCATCACGCTCATCTGGCCATAGGAACA
AAAGAGACGGAAGCCGCCTTTTCGGTCGAAGATCTCGACACTTAATGTGT
ACTGGCTTCCCCACCCCACCCCTCCCTCCCTCCCGCTTGCCCGCCCGCTT
CCTGTCCCTCCACTCATCCTCCTCCCTATCCCTGCCCTACTCATGCAGCG
GCCGTTCCTCAGACAGAATTCCCTCCACTCCCCTCCTCCTTCCCTCCCTC
CCTCCTCCTCCCCGTCCTCCATTTTCAGGGACGGTAGCAGCTCCACAGGC
CCGCCCTTCAGGCTCTTCAGCCATGGCCAGCGTGCGATGCACAACGGTTT
CCATAATTGGTCGCTTCCTGCGAGATCTCGCCATTGCTTGCTGACGAGTG
AGAGGGTTCCGAGTTGTCTCCGTCCGTCCGTCCCGTCGGTGTAACTGGGC
CTGCCCGACCAGACGAAATCGAAGATGTGGAGGAGGAGGGAGGAAGGAAG
GGAGGACAGGGTGATGGGTTGACGAGAAGAGGAGGGGGTGGTGGAGTAGG
AGGAAGAATGGCTTCGTTTGACAGGGAGATGGGCCGAGGAGGAGGAGGAG
GAGGAGGAGGAAGAGGAAGAGGAGGAAGGTAGGGAGAGGGGTCGGCGGCG
GTGCGTCAAAGAGAGGGAGGTGGAGGTACACGGCGAGGAGATGCTGCTGT
TGGTGGATTCATCGTCCTATGATTGGCAAAA
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Coding sequence (CDS) from alignment at scaffold_19:445650..446580+

>mRNA_7409 ID=mRNA_7409|Name=jgi.p|Nanoce1779_2|134468|organism=Nannochloropsis oceanica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_19:445650..446580+ (Nannochloropsis oceanica)
ATGCCCACTTACCATAGACAGGGTCCCGGGTGGCGGCCGAGAAATGCCAA
CAGCTCGCAAAGCCTGTCACGGCGAGTTTTGTCAACCACCGTCCTTCGTT
CCCCACCCCCTGCTGCATCACGCTCATCTGGCCATAGGAACAAAAGAGAC
GGAAGCCGCCTTTTCGGTCGAAGATCTCGACACTTAATGTGTACTGGCTT
CCCCACCCCACCCCTCCCTCCCTCCCGCTTGCCCGCCCGCTTCCTGTCCC
TCCACTCATCCTCCTCCCTATCCCTGCCCTACTCATGCAGCGGCCGTTCC
TCAGACAGAATTCCCTCCACTCCCCTCCTCCTTCCCTCCCTCCCTCCTCC
TCCCCGTCCTCCATTTTCAGGGACGGTAGCAGCTCCACAGGCCCGCCCTT
CAGGCTCTTCAGCCATGGCCAGCGTGCGATGCACAACGGTTTCCATAATT
GGTCGCTTCCTGCGAGATCTCGCCATTGCTTGCTGA
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Synonyms
Publications