jgi.p|Nanoce1779_2|134048, mRNA_7405 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|134048
Unique NamemRNA_7405
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1271
Alignment locationscaffold_19:432810..434529 -

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Properties
Property NameValue
TranscriptId134134
TrackFilteredModels2
ProteinId134048
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:432810..434529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|134048gene_7405Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|134048mRNA_7405-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7405CDS_7405Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7405 ID=mRNA_7405|Name=jgi.p|Nanoce1779_2|134048|organism=Nannochloropsis oceanica|type=mRNA|length=1271bp
GAACTTGGCAGGAAGACTTTTGTCTTGCACTGAAAGAGGACTTCCTCTTT
TCGGGAACGCGCGGGCCACTTTTTGCATACACATCATGATTCAATCTTTC
TAGTCTATACCTTTCCTACTATGGGATTTACTCTGCTCTCTGGTAGACAG
CTGGAAGTAGAAACACAAAGTGACGCCTTCTGGTTCCATGGGGTTCGACA
AGGCAGGTATCTATCTCCTCAAGACACTTTTGCGGACACACGACAGAATG
TGAGCAGGTCCGAAAAAGGAGGAGAATCTCAATATCGTTGCTTGGATATT
GGTGTCTTTAGAGGTGCACCACACACATGCCTTGCGCCTCTCCAACATTA
CTCTCACAACTCCCCTAACGCAAGGAGGCATCGTGTGACATCCCCACCTT
CCGAAACCCTCTACTCCTCGGTAACGTCGATTTGTCGGCCACAAAATCCA
CAGGCTATAGCCAAGGCTATCAAAATTATGACCACAAAATCCACAGAATG
CTCCGCGTCGCCTTCCTCAAGAACCTCCACTCTGTCGTCCGTACTCGCCC
TCGGCACTACCAACAGACCGTCCATCACGCCTCCACAACCCGTTCTGTTT
GGCTGTGCGATCCCGCGATCGTTATCACGTCGTCCGTGTCCGGGTGTAGG
AGGGGCCCCGGAAGAGCACCCGCCCAAACATGTCGCTGCTGGCCTCTTCC
TGGTTCAAATTCTTCGACTCATGAATGTTGGCAGGCTGGATAGCAAAAAA
ACAGCAGATCAACAGGACTGTGAGAGAAGGATGGATAAAAGGGAAGCGGA
CAGAAAGAGGCGACGGAGGCATAAAACGGAAAAAGGAAAAAGGGAAAAAA
GACAAAAAGAGACATCTTATGTTAAGTTTCTCAATATCTTAAATCTCCTC
AGGTCTCCTTTAATTCGGCCTTTTGACGATATTCGCGATTGATTCGTCTA
GCATTGCCTAGTAGCCTCCATTGTTTGTTTTCTCTTTGTTTGGGTCTACC
GCCGCCCGCATTTTCCCCCCTTTTTCTATTCAGCTCTTGTGATTGTTATT
ATTCTTGATCTTCTCCCCCATCGCCATACATGATGCACAAGAGGTGGTTA
CCTTCGTGTTTCTTTCCCCTTCCTTTTCTTTTACTCCTCTCTCCTTGTGT
CTCGTCCTCTCCCTCTCCCCACTCCTTTCCGTCACTCACACATTCTCATA
CTTGCAAATCTTCCCTCTGCCTCTTCTTCATCCCACCTCCTTTCTTTCGT
CCTCACGATTATTTCTTTACC
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protein sequence of jgi.p|Nanoce1779_2|134048

>mRNA_7405-protein ID=mRNA_7405-protein|Name=jgi.p|Nanoce1779_2|134048|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MGFTLLSGRQLEVETQSDAFWFHGVRQGRYLSPQDTFADTRQNVSRSEKG
GESQYRCLDIGVFRGAPHTCLAPLQHYSHNSPNARRHRVTSPPSETLYSS
VTSICRPQNPQAIAKAIKIMTTKSTECSASPSSRTSTLSSVLALGTTNRP
SITPPQPVLFGCAIPRSLSRRPCPGVGGAPEEHPPKHVAAGLFLVQILRL
MNVGRLDSKKTADQQDCERRMDKREADRKRRRRHKTEKGKREKRQKETSY
VKFLNILNLLRSPLIRPFDDIRD*
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mRNA from alignment at scaffold_19:432810..434529-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7405 ID=mRNA_7405|Name=jgi.p|Nanoce1779_2|134048|organism=Nannochloropsis oceanica|type=mRNA|length=1720bp|location=Sequence derived from alignment at scaffold_19:432810..434529- (Nannochloropsis oceanica)
GAACTTGGCAGGAAGACTTTTGTCTTGCACTGAAAGAGGACTTCCTCTTT
TCGGGAACGCGCGGGCCACTTTTTGCATACACATCATGATTCAATCTTTC
TAGTCTATACCTTTCCTACTATGGGATTTACTCTGCTCTCTGGTAGACAG
CTGGAAGTAGAAACACAAAGTGACGCCTTCTGGTTCCATGGGGTTCGACA
AGGCAGGTATCTATCTCCTCAAGACACTTTTGCGGACACACGACAGAATG
TGAGCAGGTCCGAAAAAGGAGGAGAATCTCAATATCGTTGCTTGGATATT
GGTGTCTTTAGAGGTGCACCACACACATGCCTTGCGCCTCTCCAACATTA
CTCTCACAACTCCCCTAACGCAAGGAGGCATCGTGTGACATCCCCACCTT
CCGAAACCCTCTACTCCTCGGTAACGTCGATTTGTCGGCCACAAAATCCA
CAGGCTATAGCCAAGGCTATCAAAATTATGACCACAAAATCCACAGAATG
CTCCGCGTCGCCTTCCTCAAGAACCTCCACTCTGTCGTCCGTACTCGGTA
GGTTCGTGTAGATAGGGGATGCGGGAAGGGTTTAGAAGTGAGTTAATGAA
TTCAATAGAATGCATTTTGTGAGGCGGGTGGATTATAGCATTGGGAACAA
GAATCTCATACAACGTTCGCTCCCGCACACGCACAGCCCTCGGCACTACC
AACAGACCGTCCATCACGCCTCCACAACCCGTTCTGTTTGGCTGTGCGAT
CCCGCGGTACGTGACAGTTCGTAGCTGTAAAACTCCGGACAAAGGAACCA
GTTGCAATTGTTATTCTCCTTGTTACACATGATTCCTTTCTCTCATTTCC
CTTGCTTTCCCCTCATTTCTCCGTCTTTCCTCTATGGTTTTCGTTCATGT
TTCTCATGGATCTTGTCCGCGCTCACTCCGTCCCTTCGTCCCTCCGCTCC
ACCTCCCACCTATAAGGTTAAACTTCAACTCGACATAGTCGACATCACCG
GCTTCCTAATTTCCACTTTCATCGTTTACTACTCCACTACCTCACCCTAC
ATCCGCTTCAAAGTAGATCGTTATCACGTCGTCCGTGTCCGGGTGTAGGA
GGGGCCCCGGAAGAGCACCCGCCCAAACATGTCGCTGCTGGCCTCTTCCT
GGTTCAAATTCTTCGACTCATGAATGTTGGCAGGCTGGATAGCAAAAAAA
CAGCAGATCAACAGGACTGTGAGAGAAGGATGGATAAAAGGGAAGCGGAC
AGAAAGAGGCGACGGAGGCATAAAACGGAAAAAGGAAAAAGGGAAAAAAG
ACAAAAAGAGACATCTTATGTTAAGTTTCTCAATATCTTAAATCTCCTCA
GGTCTCCTTTAATTCGGCCTTTTGACGATATTCGCGATTGATTCGTCTAG
CATTGCCTAGTAGCCTCCATTGTTTGTTTTCTCTTTGTTTGGGTCTACCG
CCGCCCGCATTTTCCCCCCTTTTTCTATTCAGCTCTTGTGATTGTTATTA
TTCTTGATCTTCTCCCCCATCGCCATACATGATGCACAAGAGGTGGTTAC
CTTCGTGTTTCTTTCCCCTTCCTTTTCTTTTACTCCTCTCTCCTTGTGTC
TCGTCCTCTCCCTCTCCCCACTCCTTTCCGTCACTCACACATTCTCATAC
TTGCAAATCTTCCCTCTGCCTCTTCTTCATCCCACCTCCTTTCTTTCGTC
CTCACGATTATTTCTTTACC
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Coding sequence (CDS) from alignment at scaffold_19:432810..434529-

>mRNA_7405 ID=mRNA_7405|Name=jgi.p|Nanoce1779_2|134048|organism=Nannochloropsis oceanica|type=CDS|length=2466bp|location=Sequence derived from alignment at scaffold_19:432810..434529- (Nannochloropsis oceanica)
ATCGTTATCACGTCGTCCGTGTCCGGGTGTAGGAGGGGCCCCGGAAGAGC
ACCCGCCCAAACATGTCGCTGCTGGCCTCTTCCTGGTTCAAATTCTTCGA
CTCATGAATGTTGGCAGGCTGGATAGCAAAAAAACAGCAGATCAACAGGA
CTGTGAGAGAAGGATGGATAAAAGGGAAGCGGACAGAAAGAGGCGACGGA
GGCATAAAACGGAAAAAGGAAAAAGGGAAAAAAGACAAAAAGAGACATCT
TATGTTAAGTTTCTCAATATCTTAAATCTCCTCAGGTCTCCTTTAATTCG
GCCTTTTGACGATATTCGCGATTGACCCTCGGCACTACCAACAGACCGTC
CATCACGCCTCCACAACCCGTTCTGTTTGGCTGTGCGATCCCGCGATGGG
ATTTACTCTGCTCTCTGGTAGACAGCTGGAAGTAGAAACACAAAGTGACG
CCTTCTGGTTCCATGGGGTTCGACAAGGCAGGTATCTATCTCCTCAAGAC
ACTTTTGCGGACACACGACAGAATGTGAGCAGGTCCGAAAAAGGAGGAGA
ATCTCAATATCGTTGCTTGGATATTGGTGTCTTTAGAGGTGCACCACACA
CATGCCTTGCGCCTCTCCAACATTACTCTCACAACTCCCCTAACGCAAGG
AGGCATCGTGTGACATCCCCACCTTCCGAAACCCTCTACTCCTCGGTAAC
GTCGATTTGTCGGCCACAAAATCCACAGGCTATAGCCAAGGCTATCAAAA
TTATGACCACAAAATCCACAGAATGCTCCGCGTCGCCTTCCTCAAGAACC
TCCACTCTGTCGTCCGTACTCGATCGTTATCACGTCGTCCGTGTCCGGGT
GTAGGAGGGGCCCCGGAAGAGCACCCGCCCAAACATGTCGCTGCTGGCCT
CTTCCTGGTTCAAATTCTTCGACTCATGAATGTTGGCAGGCTGGATAGCA
AAAAAACAGCAGATCAACAGGACTGTGAGAGAAGGATGGATAAAAGGGAA
GCGGACAGAAAGAGGCGACGGAGGCATAAAACGGAAAAAGGAAAAAGGGA
AAAAAGACAAAAAGAGACATCTTATGTTAAGTTTCTCAATATCTTAAATC
TCCTCAGGTCTCCTTTAATTCGGCCTTTTGACGATATTCGCGATTGACCC
TCGGCACTACCAACAGACCGTCCATCACGCCTCCACAACCCGTTCTGTTT
GGCTGTGCGATCCCGCGATGGGATTTACTCTGCTCTCTGGTAGACAGCTG
GAAGTAGAAACACAAAGTGACGCCTTCTGGTTCCATGGGGTTCGACAAGG
CAGGTATCTATCTCCTCAAGACACTTTTGCGGACACACGACAGAATGTGA
GCAGGTCCGAAAAAGGAGGAGAATCTCAATATCGTTGCTTGGATATTGGT
GTCTTTAGAGGTGCACCACACACATGCCTTGCGCCTCTCCAACATTACTC
TCACAACTCCCCTAACGCAAGGAGGCATCGTGTGACATCCCCACCTTCCG
AAACCCTCTACTCCTCGGTAACGTCGATTTGTCGGCCACAAAATCCACAG
GCTATAGCCAAGGCTATCAAAATTATGACCACAAAATCCACAGAATGCTC
CGCGTCGCCTTCCTCAAGAACCTCCACTCTGTCGTCCGTACTCGATCGTT
ATCACGTCGTCCGTGTCCGGGTGTAGGAGGGGCCCCGGAAGAGCACCCGC
CCAAACATGTCGCTGCTGGCCTCTTCCTGGTTCAAATTCTTCGACTCATG
AATGTTGGCAGGCTGGATAGCAAAAAAACAGCAGATCAACAGGACTGTGA
GAGAAGGATGGATAAAAGGGAAGCGGACAGAAAGAGGCGACGGAGGCATA
AAACGGAAAAAGGAAAAAGGGAAAAAAGACAAAAAGAGACATCTTATGTT
AAGTTTCTCAATATCTTAAATCTCCTCAGGTCTCCTTTAATTCGGCCTTT
TGACGATATTCGCGATTGACCCTCGGCACTACCAACAGACCGTCCATCAC
GCCTCCACAACCCGTTCTGTTTGGCTGTGCGATCCCGCGATGGGATTTAC
TCTGCTCTCTGGTAGACAGCTGGAAGTAGAAACACAAAGTGACGCCTTCT
GGTTCCATGGGGTTCGACAAGGCAGGTATCTATCTCCTCAAGACACTTTT
GCGGACACACGACAGAATGTGAGCAGGTCCGAAAAAGGAGGAGAATCTCA
ATATCGTTGCTTGGATATTGGTGTCTTTAGAGGTGCACCACACACATGCC
TTGCGCCTCTCCAACATTACTCTCACAACTCCCCTAACGCAAGGAGGCAT
CGTGTGACATCCCCACCTTCCGAAACCCTCTACTCCTCGGTAACGTCGAT
TTGTCGGCCACAAAATCCACAGGCTATAGCCAAGGCTATCAAAATTATGA
CCACAAAATCCACAGAATGCTCCGCGTCGCCTTCCTCAAGAACCTCCACT
CTGTCGTCCGTACTCG
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Synonyms
Publications