jgi.p|Nanoce1779_2|598637, mRNA_7404 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598637
Unique Name	mRNA_7404
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1192
Alignment location	scaffold_19:432009..433200 -

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Properties


Property Name	Value
TranscriptId	598723
Track	FilteredModels2
ProteinId	598637

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:432009..433200 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598637	gene_7404	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598637	mRNA_7404-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7404	CDS_7404	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:432009..433200-
coding sequence from alignment at scaffold_19:432009..433200-

mRNA sequence

>mRNA_7404 ID=mRNA_7404|Name=jgi.p|Nanoce1779_2|598637|organism=Nannochloropsis oceanica|type=mRNA|length=1192bp
TCAATATCTTAAATCTCCTCAGGTCTCCTTTAATTCGGCCTTTTGACGAT
ATTCGCGATTGATTCGTCTAGCATTGCCTAGTAGCCTCCATTGTTTGTTT
TCTCTTTGTTTGGGTCTACCGCCGCCCGCATTTTCCCCCCTTTTTCTATT
CAGCTCTTGTGATTGTTATTATTCTTGATCTTCTCCCCCATCGCCATACA
TGATGCACAAGAGGTGGTTACCTTCGTGTTTCTTTCCCCTTCCTTTTCTT
TTACTCCTCTCTCCTTGTGTCTCGTCCTCTCCCTCTCCCCACTCCTTTCC
GTCACTCACACATTCTCATACTTGCAAATCTTCCCTCTGCCTCTTCTTCA
TCCCACCTCCTTTCTTTCGTCCTCACGATTATTTCTTTACCATAGTGTGC
ATCAGAACCTTAATATTGCCACTACTTCCACAATCTGGCCCCTTACCATT
TCATTTGTAGGGGAAAAAGTCGTTCACGGCAGCAGAACGAGCCTCTCTGC
AACTTTCCCCCCCTTACAATCCCGATTTCGCCACGGCATGAATCGGACCA
TTCTCTAGTGTTTCCACTTTGTCGCCCTCCATGGCAGACTTGATCACCAT
CGCCTTCCCCAGGGTAGAGGTGGGGATGGTCATAACAGTCGGCGCCAGCA
CGGCCAGCGGCGTCAAGAAAAAGCGTGACATCCGCTCCATCACCCGCTTC
TCTCCTCGATCGCACATCAATACGCCAGGGCGGTAAATACACAAACGGGG
GAGGTCCAACGCTTTCAAGTCTTCTTCCGTCCGTCCCTTGGTCTTGGGAT
ATAGGAGGGGGGACTTGGCGTTGCTCCCTACGGACGTTACGACGTGAAAG
GCATTCAGATTGGCTTTGGCTGCCCGGGCGGCGCCGACAACGTAGTCGTG
ATCGACCTAGACAGGAGTGAGTGGTTTGATCATTGGATCGACAATTCACT
CATTCAATCATTCAATACTTAAATTGTTCATTTTTTCCCCTTACCTTGAC
GAAACCCTCCACTCCGCTCTTTCCCCTCGTCGTCCCCAAGCAGCAAAAGC
CTACATCCGCCCCGGCAAATGCAGCAACGGCAGTAGGAGAAGGAGGATCG
GAAAGGAGGAGATCGAAGTCCAGGATGCGTTGCTCCTGTTGTGGGAGGGA
GAGAGGAAGGGAAAGAGAGAGAAAAAGAGAAACACAGGAACA

protein sequence of jgi.p|Nanoce1779_2|598637

>mRNA_7404-protein ID=mRNA_7404-protein|Name=jgi.p|Nanoce1779_2|598637|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MMHKRWLPSCFFPLPFLLLLSPCVSSSPSPHSFPSLTHSHTCKSSLCLFF
IPPPFFRPHDYFFTIVCIRTLILPLLPQSGPLPFHL*

mRNA from alignment at scaffold_19:432009..433200-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7404 ID=mRNA_7404|Name=jgi.p|Nanoce1779_2|598637|organism=Nannochloropsis oceanica|type=mRNA|length=1192bp|location=Sequence derived from alignment at scaffold_19:432009..433200- (Nannochloropsis oceanica)
TCAATATCTTAAATCTCCTCAGGTCTCCTTTAATTCGGCCTTTTGACGAT
ATTCGCGATTGATTCGTCTAGCATTGCCTAGTAGCCTCCATTGTTTGTTT
TCTCTTTGTTTGGGTCTACCGCCGCCCGCATTTTCCCCCCTTTTTCTATT
CAGCTCTTGTGATTGTTATTATTCTTGATCTTCTCCCCCATCGCCATACA
TGATGCACAAGAGGTGGTTACCTTCGTGTTTCTTTCCCCTTCCTTTTCTT
TTACTCCTCTCTCCTTGTGTCTCGTCCTCTCCCTCTCCCCACTCCTTTCC
GTCACTCACACATTCTCATACTTGCAAATCTTCCCTCTGCCTCTTCTTCA
TCCCACCTCCTTTCTTTCGTCCTCACGATTATTTCTTTACCATAGTGTGC
ATCAGAACCTTAATATTGCCACTACTTCCACAATCTGGCCCCTTACCATT
TCATTTGTAGGGGAAAAAGTCGTTCACGGCAGCAGAACGAGCCTCTCTGC
AACTTTCCCCCCCTTACAATCCCGATTTCGCCACGGCATGAATCGGACCA
TTCTCTAGTGTTTCCACTTTGTCGCCCTCCATGGCAGACTTGATCACCAT
CGCCTTCCCCAGGGTAGAGGTGGGGATGGTCATAACAGTCGGCGCCAGCA
CGGCCAGCGGCGTCAAGAAAAAGCGTGACATCCGCTCCATCACCCGCTTC
TCTCCTCGATCGCACATCAATACGCCAGGGCGGTAAATACACAAACGGGG
GAGGTCCAACGCTTTCAAGTCTTCTTCCGTCCGTCCCTTGGTCTTGGGAT
ATAGGAGGGGGGACTTGGCGTTGCTCCCTACGGACGTTACGACGTGAAAG
GCATTCAGATTGGCTTTGGCTGCCCGGGCGGCGCCGACAACGTAGTCGTG
ATCGACCTAGACAGGAGTGAGTGGTTTGATCATTGGATCGACAATTCACT
CATTCAATCATTCAATACTTAAATTGTTCATTTTTTCCCCTTACCTTGAC
GAAACCCTCCACTCCGCTCTTTCCCCTCGTCGTCCCCAAGCAGCAAAAGC
CTACATCCGCCCCGGCAAATGCAGCAACGGCAGTAGGAGAAGGAGGATCG
GAAAGGAGGAGATCGAAGTCCAGGATGCGTTGCTCCTGTTGTGGGAGGGA
GAGAGGAAGGGAAAGAGAGAGAAAAAGAGAAACACAGGAACA

Coding sequence (CDS) from alignment at scaffold_19:432009..433200-

>mRNA_7404 ID=mRNA_7404|Name=jgi.p|Nanoce1779_2|598637|organism=Nannochloropsis oceanica|type=CDS|length=261bp|location=Sequence derived from alignment at scaffold_19:432009..433200- (Nannochloropsis oceanica)
ATGATGCACAAGAGGTGGTTACCTTCGTGTTTCTTTCCCCTTCCTTTTCT
TTTACTCCTCTCTCCTTGTGTCTCGTCCTCTCCCTCTCCCCACTCCTTTC
CGTCACTCACACATTCTCATACTTGCAAATCTTCCCTCTGCCTCTTCTTC
ATCCCACCTCCTTTCTTTCGTCCTCACGATTATTTCTTTACCATAGTGTG
CATCAGAACCTTAATATTGCCACTACTTCCACAATCTGGCCCCTTACCAT
TTCATTTGTAG

Synonyms

Publications