jgi.p|Nanoce1779_2|545209, mRNA_7400 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|545209
Unique NamemRNA_7400
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length410
Alignment locationscaffold_19:425087..425496 -

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Properties
Property NameValue
TranscriptId545295
TrackFilteredModels2
ProteinId545209
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:425087..425496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|545209gene_7400Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|545209mRNA_7400-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7400CDS_7400Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7400 ID=mRNA_7400|Name=jgi.p|Nanoce1779_2|545209|organism=Nannochloropsis oceanica|type=mRNA|length=410bp
ACAGTTCAGGAAGCTCACGACATGGCGCGCACGGCCAAGGATAAGGAAGA
GGAGCAGAAGCAGGAGAAGCAAAAGCAAGGGAATGGGCAAGAGGAGGACG
ACGATGGGGACGACAGCTCGGATGAGGACTACGTGCCACCTGCAGGTGCG
TGTATTTGTGTGTATATCCATTTTTTCTCCTTCTATTTTTGTTTGTGGCG
GTCGTCAGTAGGCAGTAATTCTCGTACTGCATTCATGCTGTAATGAGACC
TCCCTGCCCCTCCCTGTAGGCCCTCCCCTCCCTCCCTCCCTCCCTCTCTC
TTCCAGAGGGGGAGTAATGCTGGCACTTGCTCCGCAGTGCTGAAACGACG
CTTTTTAAAATTACGCCATGCCTTCACTGGTGTGCATCATTCCTTATTCA
TCATGTCCAC
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protein sequence of jgi.p|Nanoce1779_2|545209

>mRNA_7400-protein ID=mRNA_7400-protein|Name=jgi.p|Nanoce1779_2|545209|organism=Nannochloropsis oceanica|type=polypeptide|length=74bp
MARTAKDKEEEQKQEKQKQGNGQEEDDDGDDSSDEDYVPPAGACICVYIH
FFSFYFCLWRSSVGSNSRTAFML*
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mRNA from alignment at scaffold_19:425087..425496-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7400 ID=mRNA_7400|Name=jgi.p|Nanoce1779_2|545209|organism=Nannochloropsis oceanica|type=mRNA|length=410bp|location=Sequence derived from alignment at scaffold_19:425087..425496- (Nannochloropsis oceanica)
ACAGTTCAGGAAGCTCACGACATGGCGCGCACGGCCAAGGATAAGGAAGA
GGAGCAGAAGCAGGAGAAGCAAAAGCAAGGGAATGGGCAAGAGGAGGACG
ACGATGGGGACGACAGCTCGGATGAGGACTACGTGCCACCTGCAGGTGCG
TGTATTTGTGTGTATATCCATTTTTTCTCCTTCTATTTTTGTTTGTGGCG
GTCGTCAGTAGGCAGTAATTCTCGTACTGCATTCATGCTGTAATGAGACC
TCCCTGCCCCTCCCTGTAGGCCCTCCCCTCCCTCCCTCCCTCCCTCTCTC
TTCCAGAGGGGGAGTAATGCTGGCACTTGCTCCGCAGTGCTGAAACGACG
CTTTTTAAAATTACGCCATGCCTTCACTGGTGTGCATCATTCCTTATTCA
TCATGTCCAC
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Coding sequence (CDS) from alignment at scaffold_19:425087..425496-

>mRNA_7400 ID=mRNA_7400|Name=jgi.p|Nanoce1779_2|545209|organism=Nannochloropsis oceanica|type=CDS|length=222bp|location=Sequence derived from alignment at scaffold_19:425087..425496- (Nannochloropsis oceanica)
ATGGCGCGCACGGCCAAGGATAAGGAAGAGGAGCAGAAGCAGGAGAAGCA
AAAGCAAGGGAATGGGCAAGAGGAGGACGACGATGGGGACGACAGCTCGG
ATGAGGACTACGTGCCACCTGCAGGTGCGTGTATTTGTGTGTATATCCAT
TTTTTCTCCTTCTATTTTTGTTTGTGGCGGTCGTCAGTAGGCAGTAATTC
TCGTACTGCATTCATGCTGTAA
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Synonyms
Publications