jgi.p|Nanoce1779_2|531381, mRNA_7399 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|531381
Unique NamemRNA_7399
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length921
Alignment locationscaffold_19:424209..425129 -

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Properties
Property NameValue
TranscriptId531467
TrackFilteredModels2
ProteinId531381
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:424209..425129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531381gene_7399Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7399CDS_7399Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531381mRNA_7399-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7399 ID=mRNA_7399|Name=jgi.p|Nanoce1779_2|531381|organism=Nannochloropsis oceanica|type=mRNA|length=921bp
ATGCCTTCACTGGTGTGCATCATTCCTTATTCATCATGTCCACCCATTCT
CCCTTTCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTTTCCCCTACTCTCT
CTCACTTTCTAGACGACGGAGACGATGCCCCAGGAGTGGGTATCCGCGGC
CGTATCAACGCCGCAGACGACGGTCGAGAAACCCTCGCCCGGCCCGGCAC
ACAACGAGCTCAAGAAGAACGCAAAAAGCGAATGGAAAGTATCTGGGCGG
AGATGCAAAAGAACGATAAAATCAACGTATCAACCGTCATGATGGGAAAG
AGAAAGGCATGTGAGGCAGGAAAGGAGAGCGGGGGTGGAGTAGAGAAGAA
AAAAAAACAGCACTACAAGAAGGCCCGTGCTTTGCTGGCCGGTATCTTTG
GGAAGAGCACCGCGGCGTCGATAGTGACGGGCCTTGGAGAGGGAGGGAGG
GAGGGAGGAAGGGAGAGGGAGGAGAGGCAAGCAGTGTTGAAGGCACATGC
CTCAAGGACAACGGTCACGGAGACGAAGAAATTCGCGGGGCAAGAGGTGC
AGATTAAAAGGGTGGTCGTAGGATCTGCAGCAGCAGCGGCGGCGGCGGCA
GCAGCAGCAGCATCGATGGCAGCAGCGACGAATGGAGGCACAAAAAAAGG
CGGGGGTTTGGAGTCGGTGCTGAAGGAAATGAAGGGTCCCGAGAGCATAA
GCACTATTGCGAAAAGCAGCACGGATTGGGATGCCTACAAGGCTGATAAG
GGAATTGAGGAGGACCTGGCCCAGGCGACGAGAGATGGGTATTTGGCGAA
GAAGGATTTCTTGCAAGATTGTGACGTGAGGCTTTTTGAACGGGAGAGGG
ATGAGAGGAACGCACATCGGGCTAGGCAAGAGGTTGGGGGTGGTGGAGGG
GGAGGAGGAGGGGGGTTGTGA
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protein sequence of jgi.p|Nanoce1779_2|531381

>mRNA_7399-protein ID=mRNA_7399-protein|Name=jgi.p|Nanoce1779_2|531381|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MPSLVCIIPYSSCPPILPFSLPPSLPPSLSPTLSHFLDDGDDAPGVGIRG
RINAADDGRETLARPGTQRAQEERKKRMESIWAEMQKNDKINVSTVMMGK
RKACEAGKESGGGVEKKKKQHYKKARALLAGIFGKSTAASIVTGLGEGGR
EGGREREERQAVLKAHASRTTVTETKKFAGQEVQIKRVVVGSAAAAAAAA
AAAASMAAATNGGTKKGGGLESVLKEMKGPESISTIAKSSTDWDAYKADK
GIEEDLAQATRDGYLAKKDFLQDCDVRLFERERDERNAHRARQEVGGGGG
GGGGGL*
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mRNA from alignment at scaffold_19:424209..425129-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7399 ID=mRNA_7399|Name=jgi.p|Nanoce1779_2|531381|organism=Nannochloropsis oceanica|type=mRNA|length=921bp|location=Sequence derived from alignment at scaffold_19:424209..425129- (Nannochloropsis oceanica)
ATGCCTTCACTGGTGTGCATCATTCCTTATTCATCATGTCCACCCATTCT
CCCTTTCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTTTCCCCTACTCTCT
CTCACTTTCTAGACGACGGAGACGATGCCCCAGGAGTGGGTATCCGCGGC
CGTATCAACGCCGCAGACGACGGTCGAGAAACCCTCGCCCGGCCCGGCAC
ACAACGAGCTCAAGAAGAACGCAAAAAGCGAATGGAAAGTATCTGGGCGG
AGATGCAAAAGAACGATAAAATCAACGTATCAACCGTCATGATGGGAAAG
AGAAAGGCATGTGAGGCAGGAAAGGAGAGCGGGGGTGGAGTAGAGAAGAA
AAAAAAACAGCACTACAAGAAGGCCCGTGCTTTGCTGGCCGGTATCTTTG
GGAAGAGCACCGCGGCGTCGATAGTGACGGGCCTTGGAGAGGGAGGGAGG
GAGGGAGGAAGGGAGAGGGAGGAGAGGCAAGCAGTGTTGAAGGCACATGC
CTCAAGGACAACGGTCACGGAGACGAAGAAATTCGCGGGGCAAGAGGTGC
AGATTAAAAGGGTGGTCGTAGGATCTGCAGCAGCAGCGGCGGCGGCGGCA
GCAGCAGCAGCATCGATGGCAGCAGCGACGAATGGAGGCACAAAAAAAGG
CGGGGGTTTGGAGTCGGTGCTGAAGGAAATGAAGGGTCCCGAGAGCATAA
GCACTATTGCGAAAAGCAGCACGGATTGGGATGCCTACAAGGCTGATAAG
GGAATTGAGGAGGACCTGGCCCAGGCGACGAGAGATGGGTATTTGGCGAA
GAAGGATTTCTTGCAAGATTGTGACGTGAGGCTTTTTGAACGGGAGAGGG
ATGAGAGGAACGCACATCGGGCTAGGCAAGAGGTTGGGGGTGGTGGAGGG
GGAGGAGGAGGGGGGTTGTGA
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Coding sequence (CDS) from alignment at scaffold_19:424209..425129-

>mRNA_7399 ID=mRNA_7399|Name=jgi.p|Nanoce1779_2|531381|organism=Nannochloropsis oceanica|type=CDS|length=921bp|location=Sequence derived from alignment at scaffold_19:424209..425129- (Nannochloropsis oceanica)
ATGCCTTCACTGGTGTGCATCATTCCTTATTCATCATGTCCACCCATTCT
CCCTTTCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTTTCCCCTACTCTCT
CTCACTTTCTAGACGACGGAGACGATGCCCCAGGAGTGGGTATCCGCGGC
CGTATCAACGCCGCAGACGACGGTCGAGAAACCCTCGCCCGGCCCGGCAC
ACAACGAGCTCAAGAAGAACGCAAAAAGCGAATGGAAAGTATCTGGGCGG
AGATGCAAAAGAACGATAAAATCAACGTATCAACCGTCATGATGGGAAAG
AGAAAGGCATGTGAGGCAGGAAAGGAGAGCGGGGGTGGAGTAGAGAAGAA
AAAAAAACAGCACTACAAGAAGGCCCGTGCTTTGCTGGCCGGTATCTTTG
GGAAGAGCACCGCGGCGTCGATAGTGACGGGCCTTGGAGAGGGAGGGAGG
GAGGGAGGAAGGGAGAGGGAGGAGAGGCAAGCAGTGTTGAAGGCACATGC
CTCAAGGACAACGGTCACGGAGACGAAGAAATTCGCGGGGCAAGAGGTGC
AGATTAAAAGGGTGGTCGTAGGATCTGCAGCAGCAGCGGCGGCGGCGGCA
GCAGCAGCAGCATCGATGGCAGCAGCGACGAATGGAGGCACAAAAAAAGG
CGGGGGTTTGGAGTCGGTGCTGAAGGAAATGAAGGGTCCCGAGAGCATAA
GCACTATTGCGAAAAGCAGCACGGATTGGGATGCCTACAAGGCTGATAAG
GGAATTGAGGAGGACCTGGCCCAGGCGACGAGAGATGGGTATTTGGCGAA
GAAGGATTTCTTGCAAGATTGTGACGTGAGGCTTTTTGAACGGGAGAGGG
ATGAGAGGAACGCACATCGGGCTAGGCAAGAGGTTGGGGGTGGTGGAGGG
GGAGGAGGAGGGGGGTTGTGA
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Synonyms
Publications