jgi.p|Nanoce1779_2|133904, mRNA_7398 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|133904
Unique NamemRNA_7398
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1095
Alignment locationscaffold_19:422690..423784 +

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Properties
Property NameValue
TranscriptId133990
TrackFilteredModels2
ProteinId133904
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:422690..423784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|133904gene_7398Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|133904mRNA_7398-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7398CDS_7398Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7398 ID=mRNA_7398|Name=jgi.p|Nanoce1779_2|133904|organism=Nannochloropsis oceanica|type=mRNA|length=1095bp
CATCTATACAATCAATGGCCAGTTCTTGCGTTCTCCCTTCTCACAACATA
TAAAAAACACTTCTCCCCCACTCCGAATATTCACAGGAGCCAAAAATTAT
GCCGCCATCGTCCACTTCACCACGTGCACCGCCACCCCTCCTCCCTCCTT
CACCTCGAGGGGTACTTCATCGCAAGTTGGCGGTGGTGGGGCATCGGGGG
GCGGGGAAAACCAGCTTGATCCGCCGCTTTGTGGAGAATGCATTTACCTC
CCACCATGAACCCACCATCGAGGCACTCTACCGCCGGGTGCTCGAGACCC
CCACACCTGCACGAGGCATCGGAAGACGAGGAAGGCAACGAGGGGTGAAA
CAGCACGTATGTTGCGACATCGTTGACACGGCGGGGCATACGCATGAGCA
AGCAGAGGAAGTGGACTACTCTCGTTTCCTCTCCCGCAATGCCCTCGTGG
GTGTACATGGCTATGTCCTAGTGTACGATATGACTTCCCGTCAATCTTTT
TGCAAAGTTCAGGAGTTCAATGATGTATTGGTGAGGTTTCAAGGGGGCAG
CCCTGTACCCCGAGTCTTGGTCGCGTGCATGCTTGATCAATGTGCGCAAC
GCAAGGTAGGGAAGGAGGAAGGGAGGAAACTCGCTCGAGCTCTGGGCAAC
ATTCCGTTTGTCGAGGTCTCATCGAAGCACAATATAAATGTTGGAGAAGT
ATTTAATCTACTATTGGCAGAGGTAGAGAGGGAGGAAACGGGAGAGCTTG
GGGGAATTGAGGGAGGGCGAGGGATAGGGAGGAGCCCTAGTTTGATTGGA
GGGGAAGGGGTGGAGGGAGAGTTCTTGGGGTTGGTGGGTGAGGAGAAGGG
CTGGAAGGAGCTGCAGCTACAGAGATGGGGAGATGGTTATGCCTGTATCG
TGAGCTAGGAGTGCGTCGGGACATTTTTGGTGTGAAGATTTTTGATTCGA
TAGGAAAGACAAGCGGGAGAAGGATTGAGAGGGAGGGAATGGGGAGAGGG
GAGAAAAGACATGTTTTCGGGGCAAGTTCTCCTCACGTTCGTTCAGAATG
AGTCAGAGGTTGGAGGGGGAGGGATAGGGGGAGGGGGGGAAGGGA
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protein sequence of jgi.p|Nanoce1779_2|133904

>mRNA_7398-protein ID=mRNA_7398-protein|Name=jgi.p|Nanoce1779_2|133904|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MPPSSTSPRAPPPLLPPSPRGVLHRKLAVVGHRGAGKTSLIRRFVENAFT
SHHEPTIEALYRRVLETPTPARGIGRRGRQRGVKQHVCCDIVDTAGHTHE
QAEEVDYSRFLSRNALVGVHGYVLVYDMTSRQSFCKVQEFNDVLVRFQGG
SPVPRVLVACMLDQCAQRKVGKEEGRKLARALGNIPFVEVSSKHNINVGE
VFNLLLAEVEREETGELGGIEGGRGIGRSPSLIGGEGVEGEFLGLVGEEK
GWKELQLQRWGDGYACIVS*
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mRNA from alignment at scaffold_19:422690..423784+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7398 ID=mRNA_7398|Name=jgi.p|Nanoce1779_2|133904|organism=Nannochloropsis oceanica|type=mRNA|length=1095bp|location=Sequence derived from alignment at scaffold_19:422690..423784+ (Nannochloropsis oceanica)
CATCTATACAATCAATGGCCAGTTCTTGCGTTCTCCCTTCTCACAACATA
TAAAAAACACTTCTCCCCCACTCCGAATATTCACAGGAGCCAAAAATTAT
GCCGCCATCGTCCACTTCACCACGTGCACCGCCACCCCTCCTCCCTCCTT
CACCTCGAGGGGTACTTCATCGCAAGTTGGCGGTGGTGGGGCATCGGGGG
GCGGGGAAAACCAGCTTGATCCGCCGCTTTGTGGAGAATGCATTTACCTC
CCACCATGAACCCACCATCGAGGCACTCTACCGCCGGGTGCTCGAGACCC
CCACACCTGCACGAGGCATCGGAAGACGAGGAAGGCAACGAGGGGTGAAA
CAGCACGTATGTTGCGACATCGTTGACACGGCGGGGCATACGCATGAGCA
AGCAGAGGAAGTGGACTACTCTCGTTTCCTCTCCCGCAATGCCCTCGTGG
GTGTACATGGCTATGTCCTAGTGTACGATATGACTTCCCGTCAATCTTTT
TGCAAAGTTCAGGAGTTCAATGATGTATTGGTGAGGTTTCAAGGGGGCAG
CCCTGTACCCCGAGTCTTGGTCGCGTGCATGCTTGATCAATGTGCGCAAC
GCAAGGTAGGGAAGGAGGAAGGGAGGAAACTCGCTCGAGCTCTGGGCAAC
ATTCCGTTTGTCGAGGTCTCATCGAAGCACAATATAAATGTTGGAGAAGT
ATTTAATCTACTATTGGCAGAGGTAGAGAGGGAGGAAACGGGAGAGCTTG
GGGGAATTGAGGGAGGGCGAGGGATAGGGAGGAGCCCTAGTTTGATTGGA
GGGGAAGGGGTGGAGGGAGAGTTCTTGGGGTTGGTGGGTGAGGAGAAGGG
CTGGAAGGAGCTGCAGCTACAGAGATGGGGAGATGGTTATGCCTGTATCG
TGAGCTAGGAGTGCGTCGGGACATTTTTGGTGTGAAGATTTTTGATTCGA
TAGGAAAGACAAGCGGGAGAAGGATTGAGAGGGAGGGAATGGGGAGAGGG
GAGAAAAGACATGTTTTCGGGGCAAGTTCTCCTCACGTTCGTTCAGAATG
AGTCAGAGGTTGGAGGGGGAGGGATAGGGGGAGGGGGGGAAGGGA
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Coding sequence (CDS) from alignment at scaffold_19:422690..423784+

>mRNA_7398 ID=mRNA_7398|Name=jgi.p|Nanoce1779_2|133904|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at scaffold_19:422690..423784+ (Nannochloropsis oceanica)
ATGCCGCCATCGTCCACTTCACCACGTGCACCGCCACCCCTCCTCCCTCC
TTCACCTCGAGGGGTACTTCATCGCAAGTTGGCGGTGGTGGGGCATCGGG
GGGCGGGGAAAACCAGCTTGATCCGCCGCTTTGTGGAGAATGCATTTACC
TCCCACCATGAACCCACCATCGAGGCACTCTACCGCCGGGTGCTCGAGAC
CCCCACACCTGCACGAGGCATCGGAAGACGAGGAAGGCAACGAGGGGTGA
AACAGCACGTATGTTGCGACATCGTTGACACGGCGGGGCATACGCATGAG
CAAGCAGAGGAAGTGGACTACTCTCGTTTCCTCTCCCGCAATGCCCTCGT
GGGTGTACATGGCTATGTCCTAGTGTACGATATGACTTCCCGTCAATCTT
TTTGCAAAGTTCAGGAGTTCAATGATGTATTGGTGAGGTTTCAAGGGGGC
AGCCCTGTACCCCGAGTCTTGGTCGCGTGCATGCTTGATCAATGTGCGCA
ACGCAAGGTAGGGAAGGAGGAAGGGAGGAAACTCGCTCGAGCTCTGGGCA
ACATTCCGTTTGTCGAGGTCTCATCGAAGCACAATATAAATGTTGGAGAA
GTATTTAATCTACTATTGGCAGAGGTAGAGAGGGAGGAAACGGGAGAGCT
TGGGGGAATTGAGGGAGGGCGAGGGATAGGGAGGAGCCCTAGTTTGATTG
GAGGGGAAGGGGTGGAGGGAGAGTTCTTGGGGTTGGTGGGTGAGGAGAAG
GGCTGGAAGGAGCTGCAGCTACAGAGATGGGGAGATGGTTATGCCTGTAT
CGTGAGCTAG
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Synonyms
Publications