jgi.p|Nanoce1779_2|133954, mRNA_7396 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|133954
Unique NamemRNA_7396
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1553
Alignment locationscaffold_19:417470..419096 -

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Properties
Property NameValue
TranscriptId134040
TrackFilteredModels2
ProteinId133954
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:417470..419096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|133954gene_7396Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|133954mRNA_7396-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7396CDS_7396Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7396 ID=mRNA_7396|Name=jgi.p|Nanoce1779_2|133954|organism=Nannochloropsis oceanica|type=mRNA|length=1553bp
TTTATTCTAAGAGGAGAGCGCTAGGCCGTTTCAGTCCGGAAGGAATAAGT
AGAAATGCATGGTCCGTCGGTCCATGCTCGGCTGTGCGTAAAAATCACAG
CTATGAGAACATAAGGCTGCTGCGGTGCGTCGTGATCATGTTTGTCTGGT
GTCTGAGTCATGCGTGCTTTGTATGCGATGGTACGCCTGGAATGCGAATG
GGCCTGGCAGTTGCTTCGTCAACGGCAAGTCAGACGCAGGCGTATCTCCA
CACTATTGCTAATATATATTGAGGTTGTGTGTCTCATTACAGGCGAGAGG
GATGCATTCCTGCAGTCATATACAACTGTAAGGAGATTTAGTAGTGTAAT
TTGACAACGATATAAGAGCGGCCACCTCTTTCCTGAGTCATGCGGTAGAT
CATGCGCGGGTCAAACCACGAGTTTGGTGATTTTCCTCACCATGCCTTAT
GTCTAAGTCCGTCACGCATCATGAACCTCTTGCCAACATCCCTTACAATA
CTCCGGACAAGGGCTCTTTTCTTTATGCACCATCTATGTTATAGCCAGTG
TATTGTCGAAAAAGTATTGAATACACCAAATAACTTGCCTCTTTCCCTCA
AATCACCACCACTATTACCACCGCTTCCCTTCACACAACACAGCGCCATG
GCCCACTCACAACCACCACCTCAGCAGCAACAGCATCAACAACTGCAAGA
ACAGGATGTGGACTTACTCATGACGGAGCTAGCCGTAGACGTCACCCGTC
GCGAGCGTTTGGTCCAGGCCACCCGTGCCGGGGACGTCCCCACTGTAGCC
GCCTTGCTCGAGCTCGACCATTCCCTCCTCCACCACACGTTGAATCGTAA
AACAAGTCTTCTGGTGCTCGCCGTCGAAAATGGCCACTACGGCATGAGCG
AATTTTTGCTCAAACGCGGCATTGACGCGAACAAGGTCTGTCACGCTCGT
CGGACGGCCATTCATCGCGCCGCCGCCCTTCCGGAAGCCCTTGCCCTCCC
CCTCCTTCACCTTCTCGTCCTGCACGGCGCCCGTCTTAACCCTCCATGCA
ACAGCTATGCTTTTGGATGGCTTTCCCCTCTGCATACAGCAGTAGAAAAA
CGACGGGTGGGGAATGTACGGGCATTGGTGGAATTGGGAAGTGATGTAAA
AGGAAGGGATGGGAGGCATATGACTCCATTAGATCTATGTGGACGACAAT
CAGGGATAGCGAAAGCAATCAAGGAAGGGCTGGGAATGAGATGGATAAGG
GAGACAATGCGGAAGCTGTTGGTGTTGAGTTGAGGAGGAGGGGGAGGCGG
GTGTTAAAGAGAGAGGGGAAACAGAAATCGTCGATAGCAAAAAAATAAGG
AAGACGACGAAGAACGAGAGCTTATCTTGGCGCGAAAGACGGCAAAGAAA
AGGAAAGCCCATGCCGTTTTTAAGGTTTTGTGTGGGTAGTTTCAAAGAAG
ACGAGGAAGAAGAGGGAGAAGGAGTCAAGTATGGAAGGGCGTTGGAGCGA
CCAAATGAGGACGACCATCTTGACTTGAAGAGGATGAAGCAGCAGGACGA
TGA
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protein sequence of jgi.p|Nanoce1779_2|133954

>mRNA_7396-protein ID=mRNA_7396-protein|Name=jgi.p|Nanoce1779_2|133954|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MRGSNHEFGDFPHHALCLSPSRIMNLLPTSLTILRTRALFFMHHLCYSQC
IVEKVLNTPNNLPLSLKSPPLLPPLPFTQHSAMAHSQPPPQQQQHQQLQE
QDVDLLMTELAVDVTRRERLVQATRAGDVPTVAALLELDHSLLHHTLNRK
TSLLVLAVENGHYGMSEFLLKRGIDANKVCHARRTAIHRAAALPEALALP
LLHLLVLHGARLNPPCNSYAFGWLSPLHTAVEKRRVGNVRALVELGSDVK
GRDGRHMTPLDLCGRQSGIAKAIKEGLGMRWIRETMRKLLVLS*
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mRNA from alignment at scaffold_19:417470..419096-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7396 ID=mRNA_7396|Name=jgi.p|Nanoce1779_2|133954|organism=Nannochloropsis oceanica|type=mRNA|length=1627bp|location=Sequence derived from alignment at scaffold_19:417470..419096- (Nannochloropsis oceanica)
TTTATTCTAAGAGGAGAGCGCTAGGCCGTTTCAGTCCGGAAGGAATAAGT
AGAAATGCATGGTCCGTCGGTCCATGCTCGGCTGTGCGTAAAAATCACAG
CTATGAGAACATAAGGCTGCTGCGGTGCGTCGTGATCATGTTTGTCTGGT
GTCTGAGTCATGCGTGCTTTGTATGCGATGGTACGCCTGGAATGCGAATG
GGCCTGGCAGTTGCTTCGTCAACGGCAAGTCAGACGCAGGCGTATCTCCA
CACTATTGCTAATATATATTGAGGTTGTGTGTCTCATTACAGGCGAGAGG
GATGCATTCCTGCAGTCATATACAACTGTAAGGAGATTTAGTAGTGTAAT
TTGACAACGATATAAGAGCGGCCACCTCTTTCCTGAGTCATGCGGTAGAT
CATGCGCGGGTCAAACCACGAGTTTGGTGATTTTCCTCACCATGCCTTAT
GTCTAAGTCCGTCACGCATCATGAACCTCTTGCCAACATCCCTTACAATA
CTCCGGACAAGGGCTCTTTTCTTTATGCACCATCTATGTTATAGCCAGTG
TATTGTCGAAAAAGTATTGAATACACCAAATAACTTGCCTCTTTCCCTCA
AATCACCACCACTATTACCACCGCTTCCCTTCACACAACACAGCGCCATG
GCCCACTCACAACCACCACCTCAGCAGCAACAGCATCAACAACTGCAAGA
ACAGGATGTGGACTTACTCATGACGGAGCTAGCCGTAGACGTCACCCGTC
GCGAGCGTTTGGTCCAGGCCACCCGTGCCGGGGACGTCCCCACTGTAGCC
GCCTTGCTCGAGCTCGACCATTCCCTCCTCCACCACACGTTGAATCGTAA
AACAAGTCTTCTGGTGCTCGCCGTCGAAAATGGCCACTACGGCATGAGCG
AATTTTTGCTCAAACGCGGCATTGACGCGAACAAGGTCTGTCACGCTCGT
CGGACGGCCATTCATCGCGCCGCCGCCCTTCCGGAAGCCCTTGCCCTCCC
CCTCCTTCACCTTCTCGTCCTGCACGGCGCCCGTCTTAACCCTCCATGCA
ACAGCTATGCTTTTGGATGGCTTTCCCCTCTGCATACAGCAGTAGAAAAA
CGACGGGTGGGGAATGTACGGGCATTGGTGGAATTGGGAAGTGATGTAAA
AGGAAGGGATGGGAGGCATATGACTCCATTAGATCTATGTGGACGACAAT
CAGGGATAGCGAAAGCAATCAAGGAAGGGCTGGGAATGAGATGGATAAGG
GAGACAATGCGGAAGCTGTTGGTGTTGAGTGTGTTGATGGGGAGAGAGGA
AGGAAGAAAGGGGAAACGGGGGGGAAGTGGTGGTGGTGATTGTGTAAAAG
TGAGTGAGGAGGAGGGGGAGGCGGGTGTTAAAGAGAGAGGGGAAACAGAA
ATCGTCGATAGCAAAAAAATAAGGAAGACGACGAAGAACGAGAGCTTATC
TTGGCGCGAAAGACGGCAAAGAAAAGGAAAGCCCATGCCGTTTTTAAGGT
TTTGTGTGGGTAGTTTCAAAGAAGACGAGGAAGAAGAGGGAGAAGGAGTC
AAGTATGGAAGGGCGTTGGAGCGACCAAATGAGGACGACCATCTTGACTT
GAAGAGGATGAAGCAGCAGGACGATGA
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Coding sequence (CDS) from alignment at scaffold_19:417470..419096-

>mRNA_7396 ID=mRNA_7396|Name=jgi.p|Nanoce1779_2|133954|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at scaffold_19:417470..419096- (Nannochloropsis oceanica)
TGAATGCGCGGGTCAAACCACGAGTTTGGTGATTTTCCTCACCATGCCTT
ATGTCTAAGTCCGTCACGCATCATGAACCTCTTGCCAACATCCCTTACAA
TACTCCGGACAAGGGCTCTTTTCTTTATGCACCATCTATGTTATAGCCAG
TGTATTGTCGAAAAAGTATTGAATACACCAAATAACTTGCCTCTTTCCCT
CAAATCACCACCACTATTACCACCGCTTCCCTTCACACAACACAGCGCCA
TGGCCCACTCACAACCACCACCTCAGCAGCAACAGCATCAACAACTGCAA
GAACAGGATGTGGACTTACTCATGACGGAGCTAGCCGTAGACGTCACCCG
TCGCGAGCGTTTGGTCCAGGCCACCCGTGCCGGGGACGTCCCCACTGTAG
CCGCCTTGCTCGAGCTCGACCATTCCCTCCTCCACCACACGTTGAATCGT
AAAACAAGTCTTCTGGTGCTCGCCGTCGAAAATGGCCACTACGGCATGAG
CGAATTTTTGCTCAAACGCGGCATTGACGCGAACAAGGTCTGTCACGCTC
GTCGGACGGCCATTCATCGCGCCGCCGCCCTTCCGGAAGCCCTTGCCCTC
CCCCTCCTTCACCTTCTCGTCCTGCACGGCGCCCGTCTTAACCCTCCATG
CAACAGCTATGCTTTTGGATGGCTTTCCCCTCTGCATACAGCAGTAGAAA
AACGACGGGTGGGGAATGTACGGGCATTGGTGGAATTGGGAAGTGATGTA
AAAGGAAGGGATGGGAGGCATATGACTCCATTAGATCTATGTGGACGACA
ATCAGGGATAGCGAAAGCAATCAAGGAAGGGCTGGGAATGAGATGGATAA
GGGAGACAATGCGGAAGCTGTTGGTGTTGAGTTGAATGCGCGGGTCAAAC
CACGAGTTTGGTGATTTTCCTCACCATGCCTTATGTCTAAGTCCGTCACG
CATCATGAACCTCTTGCCAACATCCCTTACAATACTCCGGACAAGGGCTC
TTTTCTTTATGCACCATCTATGTTATAGCCAGTGTATTGTCGAAAAAGTA
TTGAATACACCAAATAACTTGCCTCTTTCCCTCAAATCACCACCACTATT
ACCACCGCTTCCCTTCACACAACACAGCGCCATGGCCCACTCACAACCAC
CACCTCAGCAGCAACAGCATCAACAACTGCAAGAACAGGATGTGGACTTA
CTCATGACGGAGCTAGCCGTAGACGTCACCCGTCGCGAGCGTTTGGTCCA
GGCCACCCGTGCCGGGGACGTCCCCACTGTAGCCGCCTTGCTCGAGCTCG
ACCATTCCCTCCTCCACCACACGTTGAATCGTAAAACAAGTCTTCTGGTG
CTCGCCGTCGAAAATGGCCACTACGGCATGAGCGAATTTTTGCTCAAACG
CGGCATTGACGCGAACAAGGTCTGTCACGCTCGTCGGACGGCCATTCATC
GCGCCGCCGCCCTTCCGGAAGCCCTTGCCCTCCCCCTCCTTCACCTTCTC
GTCCTGCACGGCGCCCGTCTTAACCCTCCATGCAACAGCTATGCTTTTGG
ATGGCTTTCCCCTCTGCATACAGCAGTAGAAAAACGACGGGTGGGGAATG
TACGGGCATTGGTGGAATTGGGAAGTGATGTAAAAGGAAGGGATGGGAGG
CATATGACTCCATTAGATCTATGTGGACGACAATCAGGGATAGCGAAAGC
AATCAAGGAAGGGCTGGGAATGAGATGGATAAGGGAGACAATGCGGAAGC
TGTTGGTGTTGAGT
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Synonyms
Publications