jgi.p|Nanoce1779_2|598600, mRNA_7395 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598600
Unique Name	mRNA_7395
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1712
Alignment location	scaffold_19:415338..417049 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	598686
Track	FilteredModels2
ProteinId	598600

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:415338..417049 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598600	gene_7395	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598600	mRNA_7395-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7395	CDS_7395	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:415338..417049-
coding sequence from alignment at scaffold_19:415338..417049-

mRNA sequence

>mRNA_7395 ID=mRNA_7395|Name=jgi.p|Nanoce1779_2|598600|organism=Nannochloropsis oceanica|type=mRNA|length=1712bp
CAGCAGCAGCAGCAGCAGCAGCGACGACAGTGGCAGCAGCGCAGGCAGCA
GGGGCAGTGCGCCTCTACAAAGGGACGATGGTCCAGCCAGTGGTTGAAGC
TGGGATAAGGCAACATACAATACATGTGTATGAGCGAGCGGCCTTGGGCG
TGAACGCCGAGGGACGGATTTGTTATTTCCTTAAAGACGAGGGACAGGGG
GAGGAAAAAGAAAAAGACGATAAGAATGAGGAGGAGCAACAAGATGAAAA
TGGCACTCTTTCTTCCGAAAAGACAGGAAGCAGAAGCTATTCCTCCTCCT
CCTCCCCCCCCGTCCCCCTCTCCGTCATCCACCTCCCCCTGCACCACTTC
CTCCTTCCCGGCCTGATCGACACTCACATCCACGCCCCTCAATTTTCTTA
CACTGGAACCGCCACCCATCTTCCCCTCATGTCCTGGCTCTCCTGCTACA
CTTTTCCCGCGGAAGAGAGACTTAAAGACGACCTCCCCTACGCCAAGGCC
CTCTACTCGTCGTTACTTTCAACGGTTGTCGCACACGGCACAACCACCGC
GCTTTATTTTGCCACCAAAGACATTGAACCAACTAAGCTTCTCGCAGATC
TGGCGCACACGAAAGGTCAACGGGCATACATCGGAAAGATTAATATGGAC
CGAAACGCCCCCCCTTCCTACTGTGAGACCTCCGCCGCTTCCTCCCTCGA
AGAGACCGAAAAATTTATAAAGTATGTCAAGGAAAAGATTAATTCTCCTC
TTGTCCATCCTGCATTGACACCTCGATTTCTTCCTACCTGTTCAGAGCCC
TTGTTGAGAGGGTTGGGTGAATTAGTGAAAAAATACGGAGGAGAGGAAGA
AAAAGGAGGGAGGGAAGGAGGGAGGGCAAGAAAAGGGATTCATGTTCAGT
CGCACATCAGCGAAAGCGCCGATCACATTGAGTTCAATAAATCCCTCGCG
GAGCACCACGAAGGTACCCAGCGTGATGTCGAAGTCTTTGACAGGTGTGG
TCTTCTTACCCCTCTCACGGTGCTCGCTCATGGAATTCACCTCTCCCCTC
ACGAGCTCTCCCTCCTCTCATCCCGCGGTACCTCCCTCGCACACTGTCCT
TTGTCCAACTTTTTTTTCGGCCATTCCGTCTTGCCGACACGGACAGTATT
AGAGGCTCAAGTAAAGGTTGGGTTGGGAACCGACGTGGCGGGAGGATACT
CGCCGTCGATGTTAAGTGCAGTGAGATCGTGCGTGATCGCCTCGAGAGTG
CTGGAGGATGGAGTAGAGGAGTGGAGGCACGGAGAAGAGGTAGACGAGGA
GGGGGAAAAGATAAAATGTGAGCGACAGGAGAAGATACAAAATGAGGGGA
TGGCGGAGGGAGGGAAAGAGATGTGGTGTAAATCTGGGAGGGACGGCATG
CGGATTGATTGGAAAGAGGCTCTGTGGTTGGCGACGATGGGAGGTGCGGG
TTGCTTGGGGCTGGAGGACGAAGTCGGAAGCTTTGAGGTGGGGAAAGCAT
TTGATGCTGTTCGAATAGATGTCAAAAAGGGTGGAGGGGTGGTCGTAGTG
GAGGGAGGGCGAGATAGCGCGGAGGATTTGGTCCAGAAGTGGGTAAATTG
TGGCGATGATAGGCATGTGATTGAGGTGTGGGTGGCCGGGAGGGAGATCA
AGAAAGTCAACCAACAAGAAAAATAGAGGTCTTTAGTATAAGATTTAAAA
CAGACGAAAATC

protein sequence of jgi.p|Nanoce1779_2|598600

>mRNA_7395-protein ID=mRNA_7395-protein|Name=jgi.p|Nanoce1779_2|598600|organism=Nannochloropsis oceanica|type=polypeptide|length=533bp
MVQPVVEAGIRQHTIHVYERAALGVNAEGRICYFLKDEGQGEEKEKDDKN
EEEQQDENGTLSSEKTGSRSYSSSSSPPVPLSVIHLPLHHFLLPGLIDTH
IHAPQFSYTGTATHLPLMSWLSCYTFPAEERLKDDLPYAKALYSSLLSTV
VAHGTTTALYFATKDIEPTKLLADLAHTKGQRAYIGKINMDRNAPPSYCE
TSAASSLEETEKFIKYVKEKINSPLVHPALTPRFLPTCSEPLLRGLGELV
KKYGGEEEKGGREGGRARKGIHVQSHISESADHIEFNKSLAEHHEGTQRD
VEVFDRCGLLTPLTVLAHGIHLSPHELSLLSSRGTSLAHCPLSNFFFGHS
VLPTRTVLEAQVKVGLGTDVAGGYSPSMLSAVRSCVIASRVLEDGVEEWR
HGEEVDEEGEKIKCERQEKIQNEGMAEGGKEMWCKSGRDGMRIDWKEALW
LATMGGAGCLGLEDEVGSFEVGKAFDAVRIDVKKGGGVVVVEGGRDSAED
LVQKWVNCGDDRHVIEVWVAGREIKKVNQQEK*

mRNA from alignment at scaffold_19:415338..417049-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7395 ID=mRNA_7395|Name=jgi.p|Nanoce1779_2|598600|organism=Nannochloropsis oceanica|type=mRNA|length=1712bp|location=Sequence derived from alignment at scaffold_19:415338..417049- (Nannochloropsis oceanica)
CAGCAGCAGCAGCAGCAGCAGCGACGACAGTGGCAGCAGCGCAGGCAGCA
GGGGCAGTGCGCCTCTACAAAGGGACGATGGTCCAGCCAGTGGTTGAAGC
TGGGATAAGGCAACATACAATACATGTGTATGAGCGAGCGGCCTTGGGCG
TGAACGCCGAGGGACGGATTTGTTATTTCCTTAAAGACGAGGGACAGGGG
GAGGAAAAAGAAAAAGACGATAAGAATGAGGAGGAGCAACAAGATGAAAA
TGGCACTCTTTCTTCCGAAAAGACAGGAAGCAGAAGCTATTCCTCCTCCT
CCTCCCCCCCCGTCCCCCTCTCCGTCATCCACCTCCCCCTGCACCACTTC
CTCCTTCCCGGCCTGATCGACACTCACATCCACGCCCCTCAATTTTCTTA
CACTGGAACCGCCACCCATCTTCCCCTCATGTCCTGGCTCTCCTGCTACA
CTTTTCCCGCGGAAGAGAGACTTAAAGACGACCTCCCCTACGCCAAGGCC
CTCTACTCGTCGTTACTTTCAACGGTTGTCGCACACGGCACAACCACCGC
GCTTTATTTTGCCACCAAAGACATTGAACCAACTAAGCTTCTCGCAGATC
TGGCGCACACGAAAGGTCAACGGGCATACATCGGAAAGATTAATATGGAC
CGAAACGCCCCCCCTTCCTACTGTGAGACCTCCGCCGCTTCCTCCCTCGA
AGAGACCGAAAAATTTATAAAGTATGTCAAGGAAAAGATTAATTCTCCTC
TTGTCCATCCTGCATTGACACCTCGATTTCTTCCTACCTGTTCAGAGCCC
TTGTTGAGAGGGTTGGGTGAATTAGTGAAAAAATACGGAGGAGAGGAAGA
AAAAGGAGGGAGGGAAGGAGGGAGGGCAAGAAAAGGGATTCATGTTCAGT
CGCACATCAGCGAAAGCGCCGATCACATTGAGTTCAATAAATCCCTCGCG
GAGCACCACGAAGGTACCCAGCGTGATGTCGAAGTCTTTGACAGGTGTGG
TCTTCTTACCCCTCTCACGGTGCTCGCTCATGGAATTCACCTCTCCCCTC
ACGAGCTCTCCCTCCTCTCATCCCGCGGTACCTCCCTCGCACACTGTCCT
TTGTCCAACTTTTTTTTCGGCCATTCCGTCTTGCCGACACGGACAGTATT
AGAGGCTCAAGTAAAGGTTGGGTTGGGAACCGACGTGGCGGGAGGATACT
CGCCGTCGATGTTAAGTGCAGTGAGATCGTGCGTGATCGCCTCGAGAGTG
CTGGAGGATGGAGTAGAGGAGTGGAGGCACGGAGAAGAGGTAGACGAGGA
GGGGGAAAAGATAAAATGTGAGCGACAGGAGAAGATACAAAATGAGGGGA
TGGCGGAGGGAGGGAAAGAGATGTGGTGTAAATCTGGGAGGGACGGCATG
CGGATTGATTGGAAAGAGGCTCTGTGGTTGGCGACGATGGGAGGTGCGGG
TTGCTTGGGGCTGGAGGACGAAGTCGGAAGCTTTGAGGTGGGGAAAGCAT
TTGATGCTGTTCGAATAGATGTCAAAAAGGGTGGAGGGGTGGTCGTAGTG
GAGGGAGGGCGAGATAGCGCGGAGGATTTGGTCCAGAAGTGGGTAAATTG
TGGCGATGATAGGCATGTGATTGAGGTGTGGGTGGCCGGGAGGGAGATCA
AGAAAGTCAACCAACAAGAAAAATAGAGGTCTTTAGTATAAGATTTAAAA
CAGACGAAAATC

Coding sequence (CDS) from alignment at scaffold_19:415338..417049-

>mRNA_7395 ID=mRNA_7395|Name=jgi.p|Nanoce1779_2|598600|organism=Nannochloropsis oceanica|type=CDS|length=1599bp|location=Sequence derived from alignment at scaffold_19:415338..417049- (Nannochloropsis oceanica)
ATGGTCCAGCCAGTGGTTGAAGCTGGGATAAGGCAACATACAATACATGT
GTATGAGCGAGCGGCCTTGGGCGTGAACGCCGAGGGACGGATTTGTTATT
TCCTTAAAGACGAGGGACAGGGGGAGGAAAAAGAAAAAGACGATAAGAAT
GAGGAGGAGCAACAAGATGAAAATGGCACTCTTTCTTCCGAAAAGACAGG
AAGCAGAAGCTATTCCTCCTCCTCCTCCCCCCCCGTCCCCCTCTCCGTCA
TCCACCTCCCCCTGCACCACTTCCTCCTTCCCGGCCTGATCGACACTCAC
ATCCACGCCCCTCAATTTTCTTACACTGGAACCGCCACCCATCTTCCCCT
CATGTCCTGGCTCTCCTGCTACACTTTTCCCGCGGAAGAGAGACTTAAAG
ACGACCTCCCCTACGCCAAGGCCCTCTACTCGTCGTTACTTTCAACGGTT
GTCGCACACGGCACAACCACCGCGCTTTATTTTGCCACCAAAGACATTGA
ACCAACTAAGCTTCTCGCAGATCTGGCGCACACGAAAGGTCAACGGGCAT
ACATCGGAAAGATTAATATGGACCGAAACGCCCCCCCTTCCTACTGTGAG
ACCTCCGCCGCTTCCTCCCTCGAAGAGACCGAAAAATTTATAAAGTATGT
CAAGGAAAAGATTAATTCTCCTCTTGTCCATCCTGCATTGACACCTCGAT
TTCTTCCTACCTGTTCAGAGCCCTTGTTGAGAGGGTTGGGTGAATTAGTG
AAAAAATACGGAGGAGAGGAAGAAAAAGGAGGGAGGGAAGGAGGGAGGGC
AAGAAAAGGGATTCATGTTCAGTCGCACATCAGCGAAAGCGCCGATCACA
TTGAGTTCAATAAATCCCTCGCGGAGCACCACGAAGGTACCCAGCGTGAT
GTCGAAGTCTTTGACAGGTGTGGTCTTCTTACCCCTCTCACGGTGCTCGC
TCATGGAATTCACCTCTCCCCTCACGAGCTCTCCCTCCTCTCATCCCGCG
GTACCTCCCTCGCACACTGTCCTTTGTCCAACTTTTTTTTCGGCCATTCC
GTCTTGCCGACACGGACAGTATTAGAGGCTCAAGTAAAGGTTGGGTTGGG
AACCGACGTGGCGGGAGGATACTCGCCGTCGATGTTAAGTGCAGTGAGAT
CGTGCGTGATCGCCTCGAGAGTGCTGGAGGATGGAGTAGAGGAGTGGAGG
CACGGAGAAGAGGTAGACGAGGAGGGGGAAAAGATAAAATGTGAGCGACA
GGAGAAGATACAAAATGAGGGGATGGCGGAGGGAGGGAAAGAGATGTGGT
GTAAATCTGGGAGGGACGGCATGCGGATTGATTGGAAAGAGGCTCTGTGG
TTGGCGACGATGGGAGGTGCGGGTTGCTTGGGGCTGGAGGACGAAGTCGG
AAGCTTTGAGGTGGGGAAAGCATTTGATGCTGTTCGAATAGATGTCAAAA
AGGGTGGAGGGGTGGTCGTAGTGGAGGGAGGGCGAGATAGCGCGGAGGAT
TTGGTCCAGAAGTGGGTAAATTGTGGCGATGATAGGCATGTGATTGAGGT
GTGGGTGGCCGGGAGGGAGATCAAGAAAGTCAACCAACAAGAAAAATAG

Synonyms

Publications