jgi.p|Nanoce1779_2|598598, mRNA_7394 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598598
Unique Name	mRNA_7394
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1215
Alignment location	scaffold_19:413888..415310 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	598684
Track	FilteredModels2
ProteinId	598598

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:413888..415310 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598598	gene_7394	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598598	mRNA_7394-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7394	CDS_7394	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:413888..415310+
coding sequence from alignment at scaffold_19:413888..415310+

mRNA sequence

>mRNA_7394 ID=mRNA_7394|Name=jgi.p|Nanoce1779_2|598598|organism=Nannochloropsis oceanica|type=mRNA|length=1215bp
AGCATGGCAAGAATATCAGAAGCCCTGCCCCCTTGGAAAGTGACTCAGGC
TGTCGAAAGCTGGCTGGAAGAGGACGTGCCGAGTGTGGATATTGGGGGCT
TTGTGGTCGGCGAGGCCCCCACTACCGCCTTCCTCTACGGTAAGTCCCAA
GGTGTCTTGTGTGGCAAACCGTTCTTCGACGCTGTCTTCAAAGCCTTAGA
CTGCACGGTCGAATGGAAGGAAGGGATGGAGGATGGGGTTTTGCTCTCTC
CTCCTTCATGCAGCAGCAGCAACAGTTGCAGTACTGCAGCAGGAGGAATG
AAGGTCCATGTTGCGACTATCAGCGGGAAGGCCCGGCATATCTTGCTAGG
GGAGAGGACGGCATTAAATATTCTTACTAGGGCTAGTGGTATTGCCACAC
TAACGAGGGAATCGGTGGAGGTTGGGCGAAAGGCAGGATGGCATGGAGCT
GTCGCGGGGACCCGAAAGACCACCCCGGGCTTTCGTCTCGTTGAAAAATA
CGCCTTGTTGGTTGGAGGGGCTGCGACACACCGGCATGACTTAAGTCAGA
TGGTCATGTTGAAGGATAATCATGTCTGGAGCACCGGGAGTATCACCAAG
GCTGTCAAGAGCGCTCGGAGCGTGGGGGGGTTCTCCATTAAGATTGAGGT
GGAGTGTCAATCCCTCCCTCAAGCCCTCGAAGCTGGGACAGCCGGCGCTG
ATATCATCATGCTAGATAATTTTGTTCCAGCGCAGTTGAAGGAAACAGCA
GCAGAGGTAAAGAAGGCATTCCCACATGTAACGATTGAGGCGTCAGGGGG
TATCACCAGTGAGACACTGCATTTGTTTTTCTCGCCGCATGTGGATGTGA
TCAGTCGGGGGAATCTGACACAGGGCTATCCTGCATTAGACTTCTCGTTG
AAAGTGCAGCAGACACAGCAGCAGTAGGTGTAACTGGAGATTAAAAAATA
CATAAAGTGCTTTTCTCCCGTGTGACACGGGAGGTTTCTGAGGAAGGGCA
TTGCACTAAAAAGTTTTACCTGCACTGAGAAACTGCCTGCCGTCTTCGCC
GTATATGGATGCGGCAAAAAACTTGTCTACCACATTACTGTCATGCATTA
TACTGGCCATTGAGGTGGTTTTTGGCACAGAGGCAGCAGTAGAAAGAGAC
ATATAGGCTTGAATGATACACACGGACTAGAAAGAGGCGGAAAATGAAAA
ATATGTATGAATCAG

protein sequence of jgi.p|Nanoce1779_2|598598

>mRNA_7394-protein ID=mRNA_7394-protein|Name=jgi.p|Nanoce1779_2|598598|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MARISEALPPWKVTQAVESWLEEDVPSVDIGGFVVGEAPTTAFLYGKSQG
VLCGKPFFDAVFKALDCTVEWKEGMEDGVLLSPPSCSSSNSCSTAAGGMK
VHVATISGKARHILLGERTALNILTRASGIATLTRESVEVGRKAGWHGAV
AGTRKTTPGFRLVEKYALLVGGAATHRHDLSQMVMLKDNHVWSTGSITKA
VKSARSVGGFSIKIEVECQSLPQALEAGTAGADIIMLDNFVPAQLKETAA
EVKKAFPHVTIEASGGITSETLHLFFSPHVDVISRGNLTQGYPALDFSLK
VQQTQQQ*

mRNA from alignment at scaffold_19:413888..415310+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7394 ID=mRNA_7394|Name=jgi.p|Nanoce1779_2|598598|organism=Nannochloropsis oceanica|type=mRNA|length=1423bp|location=Sequence derived from alignment at scaffold_19:413888..415310+ (Nannochloropsis oceanica)
AGCATGGCAAGAATATCAGAAGCCCTGCCCCCTTGGAAAGTGACTCAGGC
TGTCGAAAGCTGGCTGGAAGAGGACGTGCCGAGTGTGGATATTGGGGGCT
TTGTGGTCGGCGGTAAGTTAAGGGGATCCTGCGTTGCTTACATACAAGTT
AGCGTTGAGGGGCCGCGCTGTTTTCAGTTCTTCTCCCTGTTTCCCGTATT
TGGTTTGCTTCCTTTCTTGAGCCTTCTTGTGTCTGAAGCTTCTGTTGCAG
TCCCGCTAGTCTCTCCAAGGCGCTGTCCTTCCATTGACCCCATCCTCCCT
CGTTCCTTCCCTTCCTGCAGAGGCCCCCACTACCGCCTTCCTCTACGGTA
AGTCCCAAGGTGTCTTGTGTGGCAAACCGTTCTTCGACGCTGTCTTCAAA
GCCTTAGACTGCACGGTCGAATGGAAGGAAGGGATGGAGGATGGGGTTTT
GCTCTCTCCTCCTTCATGCAGCAGCAGCAACAGTTGCAGTACTGCAGCAG
GAGGAATGAAGGTCCATGTTGCGACTATCAGCGGGAAGGCCCGGCATATC
TTGCTAGGGGAGAGGACGGCATTAAATATTCTTACTAGGGCTAGTGGTAT
TGCCACACTAACGAGGGAATCGGTGGAGGTTGGGCGAAAGGCAGGATGGC
ATGGAGCTGTCGCGGGGACCCGAAAGACCACCCCGGGCTTTCGTCTCGTT
GAAAAATACGCCTTGTTGGTTGGAGGGGCTGCGACACACCGGCATGACTT
AAGTCAGATGGTCATGTTGAAGGATAATCATGTCTGGAGCACCGGGAGTA
TCACCAAGGCTGTCAAGAGCGCTCGGAGCGTGGGGGGGTTCTCCATTAAG
ATTGAGGTGGAGTGTCAATCCCTCCCTCAAGCCCTCGAAGCTGGGACAGC
CGGCGCTGATATCATCATGCTAGATAATTTTGTTCCAGCGCAGTTGAAGG
AAACAGCAGCAGAGGTAAAGAAGGCATTCCCACATGTAACGATTGAGGCG
TCAGGGGGTATCACCAGTGAGACACTGCATTTGTTTTTCTCGCCGCATGT
GGATGTGATCAGTCGGGGGAATCTGACACAGGGCTATCCTGCATTAGACT
TCTCGTTGAAAGTGCAGCAGACACAGCAGCAGTAGGTGTAACTGGAGATT
AAAAAATACATAAAGTGCTTTTCTCCCGTGTGACACGGGAGGTTTCTGAG
GAAGGGCATTGCACTAAAAAGTTTTACCTGCACTGAGAAACTGCCTGCCG
TCTTCGCCGTATATGGATGCGGCAAAAAACTTGTCTACCACATTACTGTC
ATGCATTATACTGGCCATTGAGGTGGTTTTTGGCACAGAGGCAGCAGTAG
AAAGAGACATATAGGCTTGAATGATACACACGGACTAGAAAGAGGCGGAA
AATGAAAAATATGTATGAATCAG

Coding sequence (CDS) from alignment at scaffold_19:413888..415310+

>mRNA_7394 ID=mRNA_7394|Name=jgi.p|Nanoce1779_2|598598|organism=Nannochloropsis oceanica|type=CDS|length=1848bp|location=Sequence derived from alignment at scaffold_19:413888..415310+ (Nannochloropsis oceanica)
ATGGCAAGAATATCAGAAGCCCTGCCCCCTTGGAAAGTGACTCAGGCTGT
CGAAAGCTGGCTGGAAGAGGACGTGCCGAGTGTGGATATTGGGGGCTTTG
TGGTCGGCGAGGCCCCCACTACCGCCTTCCTCTACGGTAAGTCCCAAGGT
GTCTTGTGTGGCAAACCGTTCTTCGACGCTGTCTTCAAAGCCTTAGACTG
CACGGTCGAATGGAAGGAAGGGATGGAGGATGGGGTTTTGCTCTCTCCTC
CTTCATGCAGCAGCAGCAACAGTTGCAGTACTGCAGCAGGAGGAATGAAG
GTCCATGTTGCGACTATCAGCGGGAAGGCCCGGCATATCTTGCTAGGGGA
GAGGACGGCATTAAATATTCTTACTAGGGCTAGTGGTATTGCCACACTAA
CGAGGGAATCGGTGGAGGTTGGGCGAAAGGCAGGATGGCATGGAGCTGTC
GCGGGGACCCGAAAGACCACCCCGGGCTTTCGTCTCGTTGAAAAATACGC
CTTGTTGGTTGGAGGGGCTGCGACACACCGGCATGACTTAAGTCAGATGG
TCATGTTGAAGGATAATCATGTCTGGAGCACCGGGAGTATCACCAAGGCT
GTCAAGAGCGCTCGGAGCGTGGGGGGGTTCTCCATTAAGATTGAGGTGGA
GTGTCAATCCCTCCCTCAAGCCCTCGAAGCTGGGACAGCCGGCGCTGATA
TCATCATGCTAGATAATTTTGTTCCAGCGCAGTTGAAGGAAACAGCAGCA
GAGGTAAAGAAGGCATTCCCACATGTAACGATTGAGGCGTCAGGGGGTAT
CACCAGTGAGACACTGCATTTGTTTTTCTCGCCGCATGTGGATGTGATCA
GTCGGGGGAATCTGACACAGGGCTATCCTGCATTAGACTTCTCGTTGAAA
GTGCAGCAGACACAGCAGCAGTAGATGGCAAGAATATCAGAAGCCCTGCC
CCCTTGGAAAGTGACTCAGGCTGTCGAAAGCTGGCTGGAAGAGGACGTGC
CGAGTGTGGATATTGGGGGCTTTGTGGTCGGCGAGGCCCCCACTACCGCC
TTCCTCTACGGTAAGTCCCAAGGTGTCTTGTGTGGCAAACCGTTCTTCGA
CGCTGTCTTCAAAGCCTTAGACTGCACGGTCGAATGGAAGGAAGGGATGG
AGGATGGGGTTTTGCTCTCTCCTCCTTCATGCAGCAGCAGCAACAGTTGC
AGTACTGCAGCAGGAGGAATGAAGGTCCATGTTGCGACTATCAGCGGGAA
GGCCCGGCATATCTTGCTAGGGGAGAGGACGGCATTAAATATTCTTACTA
GGGCTAGTGGTATTGCCACACTAACGAGGGAATCGGTGGAGGTTGGGCGA
AAGGCAGGATGGCATGGAGCTGTCGCGGGGACCCGAAAGACCACCCCGGG
CTTTCGTCTCGTTGAAAAATACGCCTTGTTGGTTGGAGGGGCTGCGACAC
ACCGGCATGACTTAAGTCAGATGGTCATGTTGAAGGATAATCATGTCTGG
AGCACCGGGAGTATCACCAAGGCTGTCAAGAGCGCTCGGAGCGTGGGGGG
GTTCTCCATTAAGATTGAGGTGGAGTGTCAATCCCTCCCTCAAGCCCTCG
AAGCTGGGACAGCCGGCGCTGATATCATCATGCTAGATAATTTTGTTCCA
GCGCAGTTGAAGGAAACAGCAGCAGAGGTAAAGAAGGCATTCCCACATGT
AACGATTGAGGCGTCAGGGGGTATCACCAGTGAGACACTGCATTTGTTTT
TCTCGCCGCATGTGGATGTGATCAGTCGGGGGAATCTGACACAGGGCTAT
CCTGCATTAGACTTCTCGTTGAAAGTGCAGCAGACACAGCAGCAGTAG

Synonyms

Publications