jgi.p|Nanoce1779_2|598589, mRNA_7391 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598589
Unique Name	mRNA_7391
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1200
Alignment location	scaffold_19:405621..407502 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	598675
Track	FilteredModels2
ProteinId	598589

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:405621..407502 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598589	gene_7391	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598589	mRNA_7391-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7391	CDS_7391	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:405621..407502+
coding sequence from alignment at scaffold_19:405621..407502+

mRNA sequence

>mRNA_7391 ID=mRNA_7391|Name=jgi.p|Nanoce1779_2|598589|organism=Nannochloropsis oceanica|type=mRNA|length=1200bp
ACAGGATCGATTGCGTCGGACCCCGTCTGTACACTCTCGCCCACCACCAT
GCGTGTCCACGTCCAGGCCCTCGCTATGGTGGCCATGTTAGCCACATCGT
CTGCTTTTCAGATGCCCATGACCATGAAGGCCCCCGGTACTGGGAAAAAG
GTCCTCATCATTGGAGGAACACGCTTTAGCGGCCTGTACCTGTGGAAGGA
GCTTCATGACCGGGGCTATGACATCACCCTTTTCAATCGCGGGAAGACAC
CCAACCGCGCCTTGCCCGACGAAAGCCCCGCGGCCTTCGAGGAACGCGTG
GGTAAAACCAAGTACGTTAAAGGGGATCGAACGAACCCGGACGACCTGGC
CGCACTCGCCAAGGCGCACGATTTCGACGTTATATACGATATGAACGGCC
GCGAGAAAACGGACACCCAGCCGTTGGCCGATGCGTACAACGGTCGTGTG
GATCATTTTGTGTACATGTCTTCGGCGGGTGTGTATTTGAAAAGCGACCT
GATGCCTCATAAGGAGACGGATGCAGTGGACCCCAAGAGCCGGCATAAGG
GGAAGTTGGACACCGAGACCTATTTGCGCGAGATTGATATGCCATTCACC
TCGATTCGACCCACGTACATCTACGGTCCCCAGAATTATAATCCCCTGGA
GGAGTATTTTTTCCACCGTGTGGTGGCGGACAGGCCGGTGGTGGTGCCTG
GGCATGGACAGCATCTGACGGGGTTGGGGCACGTGAAGGATTTGGCGACG
GCCATGGCACAGGTGATTGGCCGCAAGCATGCCAAGGGGCAGATCTACAA
CGTGCAGCACCCGCAGGCTGTGACGTTCGATGGCGCCGCCCGTCTAGCCG
CCAAGGCTGCGGGGAAAGATCCGGGTATGGTGAAACTCGTGCATTATAAC
CCCAAGGAGTTTGATTTTGGGAAGAAGAAGGCCTTTCCAATGCGCCCCCA
ACACTTCTTCACGTCAGTGGAAAAGGCGATGCGGGAGCTGGACTGGGTGC
CGGTGTATGGGAATGAGGAGGGATGGAAGGATTCGTTCGAGAAGGATTAT
AAACAGAAGACGCATTCCCCTGATTTTGAGTGTGATGAGATGGTGCTGGC
AGGGAAGAAAGTGGCGGCTTAGAAGGAGGGATGGGGGGGCGGGGAGGGAT
AAGGAGGGGTGGGTGGAGGGGTCGTGGTGGTAGTGTGTGTGTGTGTGTGT

protein sequence of jgi.p|Nanoce1779_2|598589

>mRNA_7391-protein ID=mRNA_7391-protein|Name=jgi.p|Nanoce1779_2|598589|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MRVHVQALAMVAMLATSSAFQMPMTMKAPGTGKKVLIIGGTRFSGLYLWK
ELHDRGYDITLFNRGKTPNRALPDESPAAFEERVGKTKYVKGDRTNPDDL
AALAKAHDFDVIYDMNGREKTDTQPLADAYNGRVDHFVYMSSAGVYLKSD
LMPHKETDAVDPKSRHKGKLDTETYLREIDMPFTSIRPTYIYGPQNYNPL
EEYFFHRVVADRPVVVPGHGQHLTGLGHVKDLATAMAQVIGRKHAKGQIY
NVQHPQAVTFDGAARLAAKAAGKDPGMVKLVHYNPKEFDFGKKKAFPMRP
QHFFTSVEKAMRELDWVPVYGNEEGWKDSFEKDYKQKTHSPDFECDEMVL
AGKKVAA*

mRNA from alignment at scaffold_19:405621..407502+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7391 ID=mRNA_7391|Name=jgi.p|Nanoce1779_2|598589|organism=Nannochloropsis oceanica|type=mRNA|length=1882bp|location=Sequence derived from alignment at scaffold_19:405621..407502+ (Nannochloropsis oceanica)
ACAGGATCGATTGCGTCGGACCCCGTCTGTACACTCTCGCCCACCACCAT
GCGTGTCCACGTCCAGGCCCTCGCTATGGTGGCCATGTTAGCCACATCGT
CTGCTTTTCAGGTACGTGATTGGATGGAAGGGCTTTTTTTAGCTGGTGCT
CCAGCCCACCCTTGCCCTTGCTCGTTTGTCCTCCTGTCTGTCCGGGGAAG
GGACAACTGTAGCTTGCCACGTGTGACTATACCAATCACGCCTGAGTGCT
AGTATTGCAGTCTATGCAAGTGAGCAAGACAGTAGCCCATGGATGTGCTT
CGGGTCGTGGTGCTGAAAGGCGTAGCGGGTAGTCTTTCTCTCGTATCATG
TTCTCAAACTTACGTCCCCTCTTCAACATTAATCTTTTCTAGATGCCCAT
GACCATGAAGGCCCCCGGTACTGGGAAAAAGGTCCTCATCATTGGAGGAA
CACGCTTTAGCGGCCTGTACCTGTGGAAGGAGCTTCATGACCGGGTACGT
GAATGCTTTCCCTCCCTCCCTCTCTTCCTCCCACCCTCTCTGAGTGCCAC
CGAGAAGTCAAGAATAGCCAGTACAAAGTGAAGTACCCAATTGAAAGGAG
GGTAGAATGATCGAATGCTACAACATTATTCTTGAGGCCCATCTTCCTCC
CTCCCTCCCTCCCTCCCTATCTCCCTCTCTCTCTCCCTCCCTCCAGGGCT
ATGACATCACCCTTTTCAATCGCGGGAAGACACCCAACCGCGCCTTGCCC
GACGAAAGCCCCGCGGCCTTCGAGGAACGCGTGGGTAAAACCAAGTACGT
TAAAGGGGATCGAACGAACCCGGACGACCTGGCCGCACTCGCCAAGGCGC
ACGATTTCGACGTTATATACGATATGAACGGCCGCGAGAAAACGGACACC
CAGCCGTTGGCCGATGCGTACAACGGTCGTGTGGATCATTTTGTGTACAT
GTCTTCGGCGGGTGTGTATTTGAAAAGCGACCTGATGCCTCATAAGGAGA
CGGATGCAGTGGACCCCAAGAGCCGGCATAAGGGGAAGTTGGACACCGAG
ACCTATTTGCGCGAGATTGATATGCCATTCACCTCGATTCGACCCACGTA
CATCTACGGTCCCCAGAATTATAATCCCCTGGAGGAGTATTTTTTCCACC
GTGTGGTGGCGGACAGGCCGGTGGTGGTGCCTGGGCATGGACAGCATCTG
ACGGGGTTGGGGCACGTGAAGGATTTGGCGACGGCCATGGCACAGGTGAT
TGGCCGCAAGCATGCCAAGGGGCAGGTGAGGAGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGGGGGGGGGGTAAAGAGGAAAAGGTATGGAGAGGA
AAGGGATGGAGGGAGAGGATGACAGGGGTGGATATTTCCACGTAGTCTCT
TAACCGTCGTATTTATTCATTTATCTCTCCTTCCCTCCCTCCCCTCTTTT
GTTTCCACCCTCCCTCCCTCCTAGATCTACAACGTGCAGCACCCGCAGGC
TGTGACGTTCGATGGCGCCGCCCGTCTAGCCGCCAAGGCTGCGGGGAAAG
ATCCGGGTATGGTGAAACTCGTGCATTATAACCCCAAGGAGTTTGATTTT
GGGAAGAAGAAGGCCTTTCCAATGCGCCCCCAACACTTCTTCACGTCAGT
GGAAAAGGCGATGCGGGAGCTGGACTGGGTGCCGGTGTATGGGAATGAGG
AGGGATGGAAGGATTCGTTCGAGAAGGATTATAAACAGAAGACGCATTCC
CCTGATTTTGAGTGTGATGAGATGGTGCTGGCAGGGAAGAAAGTGGCGGC
TTAGAAGGAGGGATGGGGGGGCGGGGAGGGATAAGGAGGGGTGGGTGGAG
GGGTCGTGGTGGTAGTGTGTGTGTGTGTGTGT

Coding sequence (CDS) from alignment at scaffold_19:405621..407502+

>mRNA_7391 ID=mRNA_7391|Name=jgi.p|Nanoce1779_2|598589|organism=Nannochloropsis oceanica|type=CDS|length=4296bp|location=Sequence derived from alignment at scaffold_19:405621..407502+ (Nannochloropsis oceanica)
ATGCGTGTCCACGTCCAGGCCCTCGCTATGGTGGCCATGTTAGCCACATC
GTCTGCTTTTCAGATGCCCATGACCATGAAGGCCCCCGGTACTGGGAAAA
AGGTCCTCATCATTGGAGGAACACGCTTTAGCGGCCTGTACCTGTGGAAG
GAGCTTCATGACCGGGGCTATGACATCACCCTTTTCAATCGCGGGAAGAC
ACCCAACCGCGCCTTGCCCGACGAAAGCCCCGCGGCCTTCGAGGAACGCG
TGGGTAAAACCAAGTACGTTAAAGGGGATCGAACGAACCCGGACGACCTG
GCCGCACTCGCCAAGGCGCACGATTTCGACGTTATATACGATATGAACGG
CCGCGAGAAAACGGACACCCAGCCGTTGGCCGATGCGTACAACGGTCGTG
TGGATCATTTTGTGTACATGTCTTCGGCGGGTGTGTATTTGAAAAGCGAC
CTGATGCCTCATAAGGAGACGGATGCAGTGGACCCCAAGAGCCGGCATAA
GGGGAAGTTGGACACCGAGACCTATTTGCGCGAGATTGATATGCCATTCA
CCTCGATTCGACCCACGTACATCTACGGTCCCCAGAATTATAATCCCCTG
GAGGAGTATTTTTTCCACCGTGTGGTGGCGGACAGGCCGGTGGTGGTGCC
TGGGCATGGACAGCATCTGACGGGGTTGGGGCACGTGAAGGATTTGGCGA
CGGCCATGGCACAGGTGATTGGCCGCAAGCATGCCAAGGGGCAGATCTAC
AACGTGCAGCACCCGCAGGCTGTGACGTTCGATGGCGCCGCCCGTCTAGC
CGCCAAGGCTGCGGGGAAAGATCCGGGTATGGTGAAACTCGTGCATTATA
ACCCCAAGGAGTTTGATTTTGGGAAGAAGAAGGCCTTTCCAATGCGCCCC
CAACACTTCTTCACGTCAGTGGAAAAGGCGATGCGGGAGCTGGACTGGGT
GCCGGTGTATGGGAATGAGGAGGGATGGAAGGATTCGTTCGAGAAGGATT
ATAAACAGAAGACGCATTCCCCTGATTTTGAGTGTGATGAGATGGTGCTG
GCAGGGAAGAAAGTGGCGGCTTAGATGCGTGTCCACGTCCAGGCCCTCGC
TATGGTGGCCATGTTAGCCACATCGTCTGCTTTTCAGATGCCCATGACCA
TGAAGGCCCCCGGTACTGGGAAAAAGGTCCTCATCATTGGAGGAACACGC
TTTAGCGGCCTGTACCTGTGGAAGGAGCTTCATGACCGGGGCTATGACAT
CACCCTTTTCAATCGCGGGAAGACACCCAACCGCGCCTTGCCCGACGAAA
GCCCCGCGGCCTTCGAGGAACGCGTGGGTAAAACCAAGTACGTTAAAGGG
GATCGAACGAACCCGGACGACCTGGCCGCACTCGCCAAGGCGCACGATTT
CGACGTTATATACGATATGAACGGCCGCGAGAAAACGGACACCCAGCCGT
TGGCCGATGCGTACAACGGTCGTGTGGATCATTTTGTGTACATGTCTTCG
GCGGGTGTGTATTTGAAAAGCGACCTGATGCCTCATAAGGAGACGGATGC
AGTGGACCCCAAGAGCCGGCATAAGGGGAAGTTGGACACCGAGACCTATT
TGCGCGAGATTGATATGCCATTCACCTCGATTCGACCCACGTACATCTAC
GGTCCCCAGAATTATAATCCCCTGGAGGAGTATTTTTTCCACCGTGTGGT
GGCGGACAGGCCGGTGGTGGTGCCTGGGCATGGACAGCATCTGACGGGGT
TGGGGCACGTGAAGGATTTGGCGACGGCCATGGCACAGGTGATTGGCCGC
AAGCATGCCAAGGGGCAGATCTACAACGTGCAGCACCCGCAGGCTGTGAC
GTTCGATGGCGCCGCCCGTCTAGCCGCCAAGGCTGCGGGGAAAGATCCGG
GTATGGTGAAACTCGTGCATTATAACCCCAAGGAGTTTGATTTTGGGAAG
AAGAAGGCCTTTCCAATGCGCCCCCAACACTTCTTCACGTCAGTGGAAAA
GGCGATGCGGGAGCTGGACTGGGTGCCGGTGTATGGGAATGAGGAGGGAT
GGAAGGATTCGTTCGAGAAGGATTATAAACAGAAGACGCATTCCCCTGAT
TTTGAGTGTGATGAGATGGTGCTGGCAGGGAAGAAAGTGGCGGCTTAGAT
GCGTGTCCACGTCCAGGCCCTCGCTATGGTGGCCATGTTAGCCACATCGT
CTGCTTTTCAGATGCCCATGACCATGAAGGCCCCCGGTACTGGGAAAAAG
GTCCTCATCATTGGAGGAACACGCTTTAGCGGCCTGTACCTGTGGAAGGA
GCTTCATGACCGGGGCTATGACATCACCCTTTTCAATCGCGGGAAGACAC
CCAACCGCGCCTTGCCCGACGAAAGCCCCGCGGCCTTCGAGGAACGCGTG
GGTAAAACCAAGTACGTTAAAGGGGATCGAACGAACCCGGACGACCTGGC
CGCACTCGCCAAGGCGCACGATTTCGACGTTATATACGATATGAACGGCC
GCGAGAAAACGGACACCCAGCCGTTGGCCGATGCGTACAACGGTCGTGTG
GATCATTTTGTGTACATGTCTTCGGCGGGTGTGTATTTGAAAAGCGACCT
GATGCCTCATAAGGAGACGGATGCAGTGGACCCCAAGAGCCGGCATAAGG
GGAAGTTGGACACCGAGACCTATTTGCGCGAGATTGATATGCCATTCACC
TCGATTCGACCCACGTACATCTACGGTCCCCAGAATTATAATCCCCTGGA
GGAGTATTTTTTCCACCGTGTGGTGGCGGACAGGCCGGTGGTGGTGCCTG
GGCATGGACAGCATCTGACGGGGTTGGGGCACGTGAAGGATTTGGCGACG
GCCATGGCACAGGTGATTGGCCGCAAGCATGCCAAGGGGCAGATCTACAA
CGTGCAGCACCCGCAGGCTGTGACGTTCGATGGCGCCGCCCGTCTAGCCG
CCAAGGCTGCGGGGAAAGATCCGGGTATGGTGAAACTCGTGCATTATAAC
CCCAAGGAGTTTGATTTTGGGAAGAAGAAGGCCTTTCCAATGCGCCCCCA
ACACTTCTTCACGTCAGTGGAAAAGGCGATGCGGGAGCTGGACTGGGTGC
CGGTGTATGGGAATGAGGAGGGATGGAAGGATTCGTTCGAGAAGGATTAT
AAACAGAAGACGCATTCCCCTGATTTTGAGTGTGATGAGATGGTGCTGGC
AGGGAAGAAAGTGGCGGCTTAGATGCGTGTCCACGTCCAGGCCCTCGCTA
TGGTGGCCATGTTAGCCACATCGTCTGCTTTTCAGATGCCCATGACCATG
AAGGCCCCCGGTACTGGGAAAAAGGTCCTCATCATTGGAGGAACACGCTT
TAGCGGCCTGTACCTGTGGAAGGAGCTTCATGACCGGGGCTATGACATCA
CCCTTTTCAATCGCGGGAAGACACCCAACCGCGCCTTGCCCGACGAAAGC
CCCGCGGCCTTCGAGGAACGCGTGGGTAAAACCAAGTACGTTAAAGGGGA
TCGAACGAACCCGGACGACCTGGCCGCACTCGCCAAGGCGCACGATTTCG
ACGTTATATACGATATGAACGGCCGCGAGAAAACGGACACCCAGCCGTTG
GCCGATGCGTACAACGGTCGTGTGGATCATTTTGTGTACATGTCTTCGGC
GGGTGTGTATTTGAAAAGCGACCTGATGCCTCATAAGGAGACGGATGCAG
TGGACCCCAAGAGCCGGCATAAGGGGAAGTTGGACACCGAGACCTATTTG
CGCGAGATTGATATGCCATTCACCTCGATTCGACCCACGTACATCTACGG
TCCCCAGAATTATAATCCCCTGGAGGAGTATTTTTTCCACCGTGTGGTGG
CGGACAGGCCGGTGGTGGTGCCTGGGCATGGACAGCATCTGACGGGGTTG
GGGCACGTGAAGGATTTGGCGACGGCCATGGCACAGGTGATTGGCCGCAA
GCATGCCAAGGGGCAGATCTACAACGTGCAGCACCCGCAGGCTGTGACGT
TCGATGGCGCCGCCCGTCTAGCCGCCAAGGCTGCGGGGAAAGATCCGGGT
ATGGTGAAACTCGTGCATTATAACCCCAAGGAGTTTGATTTTGGGAAGAA
GAAGGCCTTTCCAATGCGCCCCCAACACTTCTTCACGTCAGTGGAAAAGG
CGATGCGGGAGCTGGACTGGGTGCCGGTGTATGGGAATGAGGAGGGATGG
AAGGATTCGTTCGAGAAGGATTATAAACAGAAGACGCATTCCCCTGATTT
TGAGTGTGATGAGATGGTGCTGGCAGGGAAGAAAGTGGCGGCTTAG

Synonyms

Publications