jgi.p|Nanoce1779_2|133418, mRNA_7389 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|133418
Unique NamemRNA_7389
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1048
Alignment locationscaffold_19:395492..396643 +

Link to JBrowse

Properties
Property NameValue
TranscriptId133504
TrackFilteredModels2
ProteinId133418
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:395492..396643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|133418gene_7389Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|133418mRNA_7389-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7389CDS_7389Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7389 ID=mRNA_7389|Name=jgi.p|Nanoce1779_2|133418|organism=Nannochloropsis oceanica|type=mRNA|length=1048bp
GAGGGAGGGAGGGAGGGGGAGGTCGTGGGGTTGTAGAAGGAGGTGGAGCA
CCTGCATAATAATAATAATGAAGTATTATGAGCGTGCCCTCCGAGCACGT
CGAGCTCAATCGGACGAGGGGGAGGGGGAGGATAACGAGGAGTCATGGCG
GCAATTTCATTAGATTACCGTATCTTTCAGTCCCTAGAACACCAACCACA
AATGCTCCATCCCTTCGCTCCCCCTCCCCTCTTTTCCAGTCATGAACGAA
GCCAAAAGCGAGCTGATTAAGGCAGCCCGGGATTATCTCCCCGATCTGAT
CCCTGTCCGTATTTTTTGCGAGGCCACGGAGGAAGAGGTAGAGGAGGCCC
TTCTCAAAGACGGATGCCTCCCTCCCCCTCTCCCTCCCCCCCTCCCTTCC
TCCTTCTGTTCCTCCCCTTTCCGCCACGTTGGAAGCTATGGAATCCGAAG
TAGCAGCGCAAGGTTAATTGCTCGACAAAATACGCACGCCAGAAGGACCA
GCACCAGCAACACCGCTAACATTTACACCGCCGGCAACAGCACCGCCTGG
AGTAGCAGCAGCAGCAACACCACTACCACCACCATCGAGGAGAGAGCCCG
TAATGTCGTGGAACAGGCGGGTGATGCGCTAGACAATCTCCTTCGCAACG
CTACCGTAGATCCCTTCATCCGTCACCAGGGGGAGATAACCGGCGTCGAT
ATCTCCCTCCATCCCTCCCTCCACGCCTTCTCTCGGAAATGGGGTCGCGC
CATGACTGATTTGTACGTCGAAAAAAGAAGAGAAATCGAGAAGTACTGTC
CGTCGGGGCATTATCCCACCCCAGTGCTGTGGGAAGGAGGGAAGGAGGGA
GCGGGAGGGAAGGAGATCTCATTGCCCGAGGTGTTGAGAAGGATATTGCA
GGCTTTAAGAGAAGGAGGAAGGGGAGGAGAAGAGAGAAGTGGAGAAAGAG
AAGAATAGAGAGGAAGAGGTAGTGGTGCTGGAGGGAGAGAAGATGGAGGA
GGAGAAGAAGAAGAAAGAGGAGGAGGATAAGGAGAAGATGGGCCAGGA
back to top

protein sequence of jgi.p|Nanoce1779_2|133418

>mRNA_7389-protein ID=mRNA_7389-protein|Name=jgi.p|Nanoce1779_2|133418|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MNEAKSELIKAARDYLPDLIPVRIFCEATEEEVEEALLKDGCLPPPLPPP
LPSSFCSSPFRHVGSYGIRSSSARLIARQNTHARRTSTSNTANIYTAGNS
TAWSSSSSNTTTTTIEERARNVVEQAGDALDNLLRNATVDPFIRHQGEIT
GVDISLHPSLHAFSRKWGRAMTDLYVEKRREIEKYCPSGHYPTPVLWEGG
KEGAGGKEISLPEVLRRILQALREGGRGGEERSGEREE*
back to top

mRNA from alignment at scaffold_19:395492..396643+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7389 ID=mRNA_7389|Name=jgi.p|Nanoce1779_2|133418|organism=Nannochloropsis oceanica|type=mRNA|length=1152bp|location=Sequence derived from alignment at scaffold_19:395492..396643+ (Nannochloropsis oceanica)
GAGGGAGGGAGGGAGGGGGAGGTCGTGGGGTTGTAGAAGGAGGTGGAGCA
CCTGCATAATAATAATAATGAAGTATTATGAGCGTGCCCTCCGAGCACGT
CGAGCTCAATCGGACGAGGGGGAGGGGGAGGATAACGAGGAGTCATGGCG
GCAATTTCATTAGATTACCGTATCTTTCAGTCCCTAGAACACCAACCACA
AATGCTCCATCCCTTCGCTCCCCCTCCCCTCTTTTCCAGTCATGAACGAA
GCCAAAAGCGAGCTGATTAAGGCAGCCCGGGATTATCTCCCCGATCTGAT
CCCTGTCCGTATTTTTTGCGAGGCCACGGAGGAAGAGGTAGAGGAGGCCC
TTCTCAAAGACGGATGCCTCCCTCCCCCTCTCCCTCCCCCCCTCCCTTCC
TCCTTCTGTTCCTCCCCTTTCCGCCACGTTGGAAGCTATGGAATCCGAAG
TAGCAGCGCAAGGTTAATTGCTCGACAAAATACGCACGCCAGAAGGACCA
GCACCAGCAACACCGCTAACATTTACACCGCCGGCAACAGCACCGCCTGG
AGTAGCAGCAGCAGCAACACCACTACCACCACCATCGAGGAGAGAGCCCG
TAATGTCGTGGAACAGGCGGGTGATGCGCTAGACAATCTCCTTCGCAACG
CTACCGTAGATCCCTTCATCCGTCACCAGGGGGAGATAACCGGCGTCGAT
ATCTCCCTCCATCCCTCCCTCCACGCCTTCTCTCGGAAATGGGGTCGCGC
CATGACTGATTTGTACGTCGAAAAAAGAAGAGAAATCGAGAAGTACTGTC
CGTCGGGGCATTATCCCACCCCAGTGCTGTGGGAAGGAGGGAAGGAGGGA
GCGGGAGGGAAGGAGATCTCATTGCCCGAGGTGTTGAGAAGGATATTGCA
GGCTTTAAGGAAGGAGAGGGAGGGGAGCAGAGAAAGGGAGGGAGGGAGGG
AGGGACGTGGGGGTGGGGTGGCGGGGGAGGAGGAGGGAGGCGTAGGGGGC
TTACAAGAGAAAGAGAAGGAGGAAGGGGAGGAGAAGAGAGAAGTGGAGAA
AGAGAAGAATAGAGAGGAAGAGGTAGTGGTGCTGGAGGGAGAGAAGATGG
AGGAGGAGAAGAAGAAGAAAGAGGAGGAGGATAAGGAGAAGATGGGCCAG
GA
back to top

Coding sequence (CDS) from alignment at scaffold_19:395492..396643+

>mRNA_7389 ID=mRNA_7389|Name=jgi.p|Nanoce1779_2|133418|organism=Nannochloropsis oceanica|type=CDS|length=1434bp|location=Sequence derived from alignment at scaffold_19:395492..396643+ (Nannochloropsis oceanica)
ATGAACGAAGCCAAAAGCGAGCTGATTAAGGCAGCCCGGGATTATCTCCC
CGATCTGATCCCTGTCCGTATTTTTTGCGAGGCCACGGAGGAAGAGGTAG
AGGAGGCCCTTCTCAAAGACGGATGCCTCCCTCCCCCTCTCCCTCCCCCC
CTCCCTTCCTCCTTCTGTTCCTCCCCTTTCCGCCACGTTGGAAGCTATGG
AATCCGAAGTAGCAGCGCAAGGTTAATTGCTCGACAAAATACGCACGCCA
GAAGGACCAGCACCAGCAACACCGCTAACATTTACACCGCCGGCAACAGC
ACCGCCTGGAGTAGCAGCAGCAGCAACACCACTACCACCACCATCGAGGA
GAGAGCCCGTAATGTCGTGGAACAGGCGGGTGATGCGCTAGACAATCTCC
TTCGCAACGCTACCGTAGATCCCTTCATCCGTCACCAGGGGGAGATAACC
GGCGTCGATATCTCCCTCCATCCCTCCCTCCACGCCTTCTCTCGGAAATG
GGGTCGCGCCATGACTGATTTGTACGTCGAAAAAAGAAGAGAAATCGAGA
AGTACTGTCCGTCGGGGCATTATCCCACCCCAGTGCTGTGGGAAGGAGGG
AAGGAGGGAGCGGGAGGGAAGGAGATCTCATTGCCCGAGGTGTTGAGAAG
GATATTGCAGGCTTTAAGAGAAGGAGGAAGGGGAGGAGAAGAGAGAAGTG
GAGAAAGAGAAGAATAGATGAACGAAGCCAAAAGCGAGCTGATTAAGGCA
GCCCGGGATTATCTCCCCGATCTGATCCCTGTCCGTATTTTTTGCGAGGC
CACGGAGGAAGAGGTAGAGGAGGCCCTTCTCAAAGACGGATGCCTCCCTC
CCCCTCTCCCTCCCCCCCTCCCTTCCTCCTTCTGTTCCTCCCCTTTCCGC
CACGTTGGAAGCTATGGAATCCGAAGTAGCAGCGCAAGGTTAATTGCTCG
ACAAAATACGCACGCCAGAAGGACCAGCACCAGCAACACCGCTAACATTT
ACACCGCCGGCAACAGCACCGCCTGGAGTAGCAGCAGCAGCAACACCACT
ACCACCACCATCGAGGAGAGAGCCCGTAATGTCGTGGAACAGGCGGGTGA
TGCGCTAGACAATCTCCTTCGCAACGCTACCGTAGATCCCTTCATCCGTC
ACCAGGGGGAGATAACCGGCGTCGATATCTCCCTCCATCCCTCCCTCCAC
GCCTTCTCTCGGAAATGGGGTCGCGCCATGACTGATTTGTACGTCGAAAA
AAGAAGAGAAATCGAGAAGTACTGTCCGTCGGGGCATTATCCCACCCCAG
TGCTGTGGGAAGGAGGGAAGGAGGGAGCGGGAGGGAAGGAGATCTCATTG
CCCGAGGTGTTGAGAAGGATATTGCAGGCTTTAAGAGAAGGAGGAAGGGG
AGGAGAAGAGAGAAGTGGAGAAAGAGAAGAATAG
back to top
Synonyms
Publications