jgi.p|Nanoce1779_2|598565, mRNA_7388 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598565
Unique Name	mRNA_7388
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1067
Alignment location	scaffold_19:391161..392227 -

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Properties


Property Name	Value
TranscriptId	598651
Track	FilteredModels2
ProteinId	598565

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:391161..392227 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598565	gene_7388	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598565	mRNA_7388-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7388	CDS_7388	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:391161..392227-
coding sequence from alignment at scaffold_19:391161..392227-

mRNA sequence

>mRNA_7388 ID=mRNA_7388|Name=jgi.p|Nanoce1779_2|598565|organism=Nannochloropsis oceanica|type=mRNA|length=1067bp
GGAAGGAAGGGAGAGGATCGAAGTTGAAATGATACTTGGAATACAATGGA
CTGTGTATCTTTGTATTTCTTTTTTTCCCCTTACATATTCCTTAATTCCC
TATTACGAACCTTCTAACGAAGGAGCTGAAGAAGTTGCATCAGGTGGCCA
AGAAGCTCGCGGCAAAGGGCGGCCCATTTGCGATGCAGCGCCCGCTCCAT
GCATGGCTTCAACGCGCCCCCGCCTCAAGAGAAGAAGCTGCCGCCAAGCA
ATTTTCATCTTAAGGTAGACATCATGAGCGAGCGCATGAGGGGATAAAAG
GGAGATGGAAAAAATTATGGTGGTGCCAAACTATTTTCTTCTTGATCCTT
ATCAATCTCCTTGCTCCTCTCACCATGTCTATTTTGATTTACGCAGTGCT
CTTGCTCCCCGTCTTCCGACCTCAAGAGATATACAGAGTAAGGTCACTTA
TGCAAGGCGATATTCAAAGTGGGATCTACTCTTCGGGTATTTCTTTTGTT
TGTCTTCATATTGAAAATGTATGGTGGTTGTCACTTTCTTCCCGTTACCC
TTGTTTTTTAGGGGAACTTTCTCCTTCGTGCCGTCCAAAAGGGGCCGATA
TCAAGGCTTTATTTTCCCTGTTTTCTAGACTCAATATACGTCTACTATTA
CCCCTTTTTTCTTTCCCTCTTCCCCTTTTAAAGTCTAAATATTCTAATCC
TAATCTCACGCTGTTATTTGGCGGCTGCCAAACAATTTATCCGTGTATTC
TTTGATGGGGAAGTGGGGAGGTTTTCCTCTTCCACCGCCGTGCATTACTC
ATATTTCCTTTTTTTTAATTTCCTGCTGTTCTCTGACACCCATCAATGAC
ATCATCATGGGCTGGCTGTATTCTCTTTCACTGTCCCCCTCCCTGGGGAC
CGATCGATTTCTAAGACACTAGAAGATAGTAAACCTGTACATCCTACTCA
CTCGTTCCCTCTCTCGTTCCCCTCCTCCTTTGTCAAAAAGGCTAAACCAT
CATCGCAATTCTCACTCCTTTCTCCTTCTGAACCTCCGTCGCTTGTAGCC
CTTCTTCCATCCAGCCT

protein sequence of jgi.p|Nanoce1779_2|598565

>mRNA_7388-protein ID=mRNA_7388-protein|Name=jgi.p|Nanoce1779_2|598565|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MSILIYAVLLLPVFRPQEIYRVRSLMQGDIQSGIYSSGISFVCLHIENVW
WLSLSSRYPCFLGELSPSCRPKGADIKALFSLFSRLNIRLLLPLFSFPLP
LLKSKYSNPNLTLLFGGCQTIYPCIL*

mRNA from alignment at scaffold_19:391161..392227-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7388 ID=mRNA_7388|Name=jgi.p|Nanoce1779_2|598565|organism=Nannochloropsis oceanica|type=mRNA|length=1067bp|location=Sequence derived from alignment at scaffold_19:391161..392227- (Nannochloropsis oceanica)
GGAAGGAAGGGAGAGGATCGAAGTTGAAATGATACTTGGAATACAATGGA
CTGTGTATCTTTGTATTTCTTTTTTTCCCCTTACATATTCCTTAATTCCC
TATTACGAACCTTCTAACGAAGGAGCTGAAGAAGTTGCATCAGGTGGCCA
AGAAGCTCGCGGCAAAGGGCGGCCCATTTGCGATGCAGCGCCCGCTCCAT
GCATGGCTTCAACGCGCCCCCGCCTCAAGAGAAGAAGCTGCCGCCAAGCA
ATTTTCATCTTAAGGTAGACATCATGAGCGAGCGCATGAGGGGATAAAAG
GGAGATGGAAAAAATTATGGTGGTGCCAAACTATTTTCTTCTTGATCCTT
ATCAATCTCCTTGCTCCTCTCACCATGTCTATTTTGATTTACGCAGTGCT
CTTGCTCCCCGTCTTCCGACCTCAAGAGATATACAGAGTAAGGTCACTTA
TGCAAGGCGATATTCAAAGTGGGATCTACTCTTCGGGTATTTCTTTTGTT
TGTCTTCATATTGAAAATGTATGGTGGTTGTCACTTTCTTCCCGTTACCC
TTGTTTTTTAGGGGAACTTTCTCCTTCGTGCCGTCCAAAAGGGGCCGATA
TCAAGGCTTTATTTTCCCTGTTTTCTAGACTCAATATACGTCTACTATTA
CCCCTTTTTTCTTTCCCTCTTCCCCTTTTAAAGTCTAAATATTCTAATCC
TAATCTCACGCTGTTATTTGGCGGCTGCCAAACAATTTATCCGTGTATTC
TTTGATGGGGAAGTGGGGAGGTTTTCCTCTTCCACCGCCGTGCATTACTC
ATATTTCCTTTTTTTTAATTTCCTGCTGTTCTCTGACACCCATCAATGAC
ATCATCATGGGCTGGCTGTATTCTCTTTCACTGTCCCCCTCCCTGGGGAC
CGATCGATTTCTAAGACACTAGAAGATAGTAAACCTGTACATCCTACTCA
CTCGTTCCCTCTCTCGTTCCCCTCCTCCTTTGTCAAAAAGGCTAAACCAT
CATCGCAATTCTCACTCCTTTCTCCTTCTGAACCTCCGTCGCTTGTAGCC
CTTCTTCCATCCAGCCT

Coding sequence (CDS) from alignment at scaffold_19:391161..392227-

>mRNA_7388 ID=mRNA_7388|Name=jgi.p|Nanoce1779_2|598565|organism=Nannochloropsis oceanica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_19:391161..392227- (Nannochloropsis oceanica)
ATGTCTATTTTGATTTACGCAGTGCTCTTGCTCCCCGTCTTCCGACCTCA
AGAGATATACAGAGTAAGGTCACTTATGCAAGGCGATATTCAAAGTGGGA
TCTACTCTTCGGGTATTTCTTTTGTTTGTCTTCATATTGAAAATGTATGG
TGGTTGTCACTTTCTTCCCGTTACCCTTGTTTTTTAGGGGAACTTTCTCC
TTCGTGCCGTCCAAAAGGGGCCGATATCAAGGCTTTATTTTCCCTGTTTT
CTAGACTCAATATACGTCTACTATTACCCCTTTTTTCTTTCCCTCTTCCC
CTTTTAAAGTCTAAATATTCTAATCCTAATCTCACGCTGTTATTTGGCGG
CTGCCAAACAATTTATCCGTGTATTCTTTGA

Synonyms

Publications