jgi.p|Nanoce1779_2|598563, mRNA_7387 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598563
Unique Name	mRNA_7387
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2404
Alignment location	scaffold_19:388714..391117 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	598649
Track	FilteredModels2
ProteinId	598563

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:388714..391117 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598563	gene_7387	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598563	mRNA_7387-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7387	CDS_7387	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:388714..391117+
coding sequence from alignment at scaffold_19:388714..391117+

mRNA sequence

>mRNA_7387 ID=mRNA_7387|Name=jgi.p|Nanoce1779_2|598563|organism=Nannochloropsis oceanica|type=mRNA|length=2404bp
ACAGGCTACCGAGAAGTAAAGTGGGAACTAAAGCAAGGAAATCAAGCAAA
CGAGCAACCAGAACCAATGCAGCATCACCTCTTCGCCCTCCTCCTGCGGC
GAGGAAGCATGCGGGCCGCCGTAACTACTGACAGGGTGTTTCGTCGCTGT
ACCATTGTCACCTCCACTTCCACAACAGCAAGAAGGACGTTGAACCCCAC
CTCCACCGCGTTGCCCACACAAGTCAGAAAGTGGGAGCAGCAGCAGCAAC
AACAACATCTGCACCAGCAACAGCATGGAGGGCTCTTGGGCACTAGGAGC
AGCAGATTAGTAGCCTCGTCCTCTTCTTCCTCCTCCATCAACAACCCCAA
CCGCTTGGGTCTAGGTCTCGCCGCGGCTGCTGTTGCCCTCGGCCTGATCA
ATGAACGAGAGGATTTGCCAGCGGAGGCCTGTGGGATAGTGGGTGTGGTG
GGAGGGGAGGATGCCCGTGCGATTTTGCTGGAAGGGCTTAATGTGCTACA
GAACAGAGGTTACGATTCTGCCGGTATTGCGACTATTTCTCCGGATCGGA
ATGAATTGACTGTAACGAAATATGCCTCGGCAGGTTCTACGCATGATTGT
ATTGAGTTGGTCAAAGAGAACAGCCACCGCCACAAGGGTCATCATTTAGG
GATTGCTCATACGCGTTGGGCGACTCATGGAGGGAAGACGGATGAGAACG
CGCACCCGCACACGGATGCCAAAGGAAGGGTGGCTGTGGTGCACAATGGC
ACGATTACGAATTCGCATGAGTTGCGCTCGGAGTTACAGAAGACGAAAGG
GATAAAGTTCGAGTCAGAGACTGACACGGAGATCATTGCGCAACTGATCG
GCTTGGGACTGGACCAGAATTTAAGTTTGAAGGAGGCGGTGGAAGAGGCA
TTAAAACTCTGCGATGGGACGTGGGGTTTGGTGGTCCTCTCACCAAAGGA
GCCGGATGAGTTGGTGGTGGCTTGTAACGGCTCCCCCATGGTGTTGGGGA
TTGGCGAAGGCCGCGTATTCATCGCATCCGAGACCTCGGCATTTAACCGC
CACACCAAGAATTTCATTGCGCTCAAGGATGGGGAAATCGGCGTGGTTCG
TGCCGACGGGTCCACGTTGGATTTGTCCCGCGTCCAAAAGGCACCGGAGG
TGAACATTTTGTTGTCCCCTGATCCTTACCCGCATTGGACTATTCGAGAG
TGCCTAGAGCAGCCCGAGGCGATCGCCCGTGCCTTGGGCTTTGGCGGGCG
CATGAGTGACACGCGCGTCTTCCTGGGGGGCTTAGACAGGCAGAAGGACC
GGATGAAGAGCATCGAGAACCTGGTCATGACGGGGTGTGGAACTAGTCTA
CATGCGGCCATGTACGCCGCCAAGCTTATGCGGGAATTTGAGGCGTTTCG
GACCGTTACAGCCGTGGACGCCGCGGAGGTCCGTTTATCAGACCTGCCAA
AACATCATGCGGGCCTGTTGGCAATCTCCCAGTCGGGCGAGACGAAGGAC
GTGCACCGGGCAGTGGTCCTCGCGGATCGCCTTGGGCTTCCGACCATGTC
GGTAGTCAATACGGTAGGGTCCCTCATTGCGCGTACGACCAAGCTCGGCG
TTTATCTCAACGCAGGGCGCGAGTCTTCCGTGGCAAGCACGAAGGCTTTT
ACCACCCAAGTGACGGTGTTGACGCTGATCACGGCCTGGTTTAGGCAGGT
GAGGGAGGAAGCAGGCGAGGAGGCATTGCCTGGACGTGTCACGGAGTTGT
TGGAAGCCCTTCAACGCATGCCAATCGGTTTTGGGATGGCTCGTCGTACC
CGGCAGCAGTGCGCGGCGCTCGCGACGCGGCTGAAGGACAAAGAACACAT
TTTCTTATTGGGGAAAGGGTATGCCGAGCCGATTGCGTTGGAGGGAGCGT
TGAAGTTGAAGGAAATGGCGTATGTTCATGCGGAGGGCTATTCAGGGGGG
GCTTTGAAACATGGTCCCTTTGCATTGATTGAGGGGAAAGAAGGCAAGCA
GGGTGCGACGCCGATTATTTGTTTAATCTTTGACGACGAACACGCCCATC
ATATGCGCACCGCTGCAGAGGAAGTCAAGGCCCGTGGAGCCGATTTGATT
GTTATCACGGACAACCCGAAATTGGCGCGTGGCCTGGTCCCTGACCCTAT
CATCATTCCGAGTAACGGCCCCTTAACGGCGCTGATTGCAACCCTGCCGT
TGCAGCTGTTAGCGTACGAACTGGCGATCTTGCGCGGAATTAATCCAGAT
AAGCCCAGGAACCTGGCCAAGGCCGTGACAGTCGACTGACTCGGTACCGT
CGGGACGGAGCGGCAAGGAGGGAGGGAGGAAGGGAAGGAGGGAGAGGAGG
AGAGGTTGAAGGAGAGAAGGGCAGTATGGGCCTGGGTGCAGGAGCAGGTG
CGGT

protein sequence of jgi.p|Nanoce1779_2|598563

>mRNA_7387-protein ID=mRNA_7387-protein|Name=jgi.p|Nanoce1779_2|598563|organism=Nannochloropsis oceanica|type=polypeptide|length=741bp
MQHHLFALLLRRGSMRAAVTTDRVFRRCTIVTSTSTTARRTLNPTSTALP
TQVRKWEQQQQQQHLHQQQHGGLLGTRSSRLVASSSSSSSINNPNRLGLG
LAAAAVALGLINEREDLPAEACGIVGVVGGEDARAILLEGLNVLQNRGYD
SAGIATISPDRNELTVTKYASAGSTHDCIELVKENSHRHKGHHLGIAHTR
WATHGGKTDENAHPHTDAKGRVAVVHNGTITNSHELRSELQKTKGIKFES
ETDTEIIAQLIGLGLDQNLSLKEAVEEALKLCDGTWGLVVLSPKEPDELV
VACNGSPMVLGIGEGRVFIASETSAFNRHTKNFIALKDGEIGVVRADGST
LDLSRVQKAPEVNILLSPDPYPHWTIRECLEQPEAIARALGFGGRMSDTR
VFLGGLDRQKDRMKSIENLVMTGCGTSLHAAMYAAKLMREFEAFRTVTAV
DAAEVRLSDLPKHHAGLLAISQSGETKDVHRAVVLADRLGLPTMSVVNTV
GSLIARTTKLGVYLNAGRESSVASTKAFTTQVTVLTLITAWFRQVREEAG
EEALPGRVTELLEALQRMPIGFGMARRTRQQCAALATRLKDKEHIFLLGK
GYAEPIALEGALKLKEMAYVHAEGYSGGALKHGPFALIEGKEGKQGATPI
ICLIFDDEHAHHMRTAAEEVKARGADLIVITDNPKLARGLVPDPIIIPSN
GPLTALIATLPLQLLAYELAILRGINPDKPRNLAKAVTVD*

mRNA from alignment at scaffold_19:388714..391117+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7387 ID=mRNA_7387|Name=jgi.p|Nanoce1779_2|598563|organism=Nannochloropsis oceanica|type=mRNA|length=2404bp|location=Sequence derived from alignment at scaffold_19:388714..391117+ (Nannochloropsis oceanica)
ACAGGCTACCGAGAAGTAAAGTGGGAACTAAAGCAAGGAAATCAAGCAAA
CGAGCAACCAGAACCAATGCAGCATCACCTCTTCGCCCTCCTCCTGCGGC
GAGGAAGCATGCGGGCCGCCGTAACTACTGACAGGGTGTTTCGTCGCTGT
ACCATTGTCACCTCCACTTCCACAACAGCAAGAAGGACGTTGAACCCCAC
CTCCACCGCGTTGCCCACACAAGTCAGAAAGTGGGAGCAGCAGCAGCAAC
AACAACATCTGCACCAGCAACAGCATGGAGGGCTCTTGGGCACTAGGAGC
AGCAGATTAGTAGCCTCGTCCTCTTCTTCCTCCTCCATCAACAACCCCAA
CCGCTTGGGTCTAGGTCTCGCCGCGGCTGCTGTTGCCCTCGGCCTGATCA
ATGAACGAGAGGATTTGCCAGCGGAGGCCTGTGGGATAGTGGGTGTGGTG
GGAGGGGAGGATGCCCGTGCGATTTTGCTGGAAGGGCTTAATGTGCTACA
GAACAGAGGTTACGATTCTGCCGGTATTGCGACTATTTCTCCGGATCGGA
ATGAATTGACTGTAACGAAATATGCCTCGGCAGGTTCTACGCATGATTGT
ATTGAGTTGGTCAAAGAGAACAGCCACCGCCACAAGGGTCATCATTTAGG
GATTGCTCATACGCGTTGGGCGACTCATGGAGGGAAGACGGATGAGAACG
CGCACCCGCACACGGATGCCAAAGGAAGGGTGGCTGTGGTGCACAATGGC
ACGATTACGAATTCGCATGAGTTGCGCTCGGAGTTACAGAAGACGAAAGG
GATAAAGTTCGAGTCAGAGACTGACACGGAGATCATTGCGCAACTGATCG
GCTTGGGACTGGACCAGAATTTAAGTTTGAAGGAGGCGGTGGAAGAGGCA
TTAAAACTCTGCGATGGGACGTGGGGTTTGGTGGTCCTCTCACCAAAGGA
GCCGGATGAGTTGGTGGTGGCTTGTAACGGCTCCCCCATGGTGTTGGGGA
TTGGCGAAGGCCGCGTATTCATCGCATCCGAGACCTCGGCATTTAACCGC
CACACCAAGAATTTCATTGCGCTCAAGGATGGGGAAATCGGCGTGGTTCG
TGCCGACGGGTCCACGTTGGATTTGTCCCGCGTCCAAAAGGCACCGGAGG
TGAACATTTTGTTGTCCCCTGATCCTTACCCGCATTGGACTATTCGAGAG
TGCCTAGAGCAGCCCGAGGCGATCGCCCGTGCCTTGGGCTTTGGCGGGCG
CATGAGTGACACGCGCGTCTTCCTGGGGGGCTTAGACAGGCAGAAGGACC
GGATGAAGAGCATCGAGAACCTGGTCATGACGGGGTGTGGAACTAGTCTA
CATGCGGCCATGTACGCCGCCAAGCTTATGCGGGAATTTGAGGCGTTTCG
GACCGTTACAGCCGTGGACGCCGCGGAGGTCCGTTTATCAGACCTGCCAA
AACATCATGCGGGCCTGTTGGCAATCTCCCAGTCGGGCGAGACGAAGGAC
GTGCACCGGGCAGTGGTCCTCGCGGATCGCCTTGGGCTTCCGACCATGTC
GGTAGTCAATACGGTAGGGTCCCTCATTGCGCGTACGACCAAGCTCGGCG
TTTATCTCAACGCAGGGCGCGAGTCTTCCGTGGCAAGCACGAAGGCTTTT
ACCACCCAAGTGACGGTGTTGACGCTGATCACGGCCTGGTTTAGGCAGGT
GAGGGAGGAAGCAGGCGAGGAGGCATTGCCTGGACGTGTCACGGAGTTGT
TGGAAGCCCTTCAACGCATGCCAATCGGTTTTGGGATGGCTCGTCGTACC
CGGCAGCAGTGCGCGGCGCTCGCGACGCGGCTGAAGGACAAAGAACACAT
TTTCTTATTGGGGAAAGGGTATGCCGAGCCGATTGCGTTGGAGGGAGCGT
TGAAGTTGAAGGAAATGGCGTATGTTCATGCGGAGGGCTATTCAGGGGGG
GCTTTGAAACATGGTCCCTTTGCATTGATTGAGGGGAAAGAAGGCAAGCA
GGGTGCGACGCCGATTATTTGTTTAATCTTTGACGACGAACACGCCCATC
ATATGCGCACCGCTGCAGAGGAAGTCAAGGCCCGTGGAGCCGATTTGATT
GTTATCACGGACAACCCGAAATTGGCGCGTGGCCTGGTCCCTGACCCTAT
CATCATTCCGAGTAACGGCCCCTTAACGGCGCTGATTGCAACCCTGCCGT
TGCAGCTGTTAGCGTACGAACTGGCGATCTTGCGCGGAATTAATCCAGAT
AAGCCCAGGAACCTGGCCAAGGCCGTGACAGTCGACTGACTCGGTACCGT
CGGGACGGAGCGGCAAGGAGGGAGGGAGGAAGGGAAGGAGGGAGAGGAGG
AGAGGTTGAAGGAGAGAAGGGCAGTATGGGCCTGGGTGCAGGAGCAGGTG
CGGT

Coding sequence (CDS) from alignment at scaffold_19:388714..391117+

>mRNA_7387 ID=mRNA_7387|Name=jgi.p|Nanoce1779_2|598563|organism=Nannochloropsis oceanica|type=CDS|length=2223bp|location=Sequence derived from alignment at scaffold_19:388714..391117+ (Nannochloropsis oceanica)
ATGCAGCATCACCTCTTCGCCCTCCTCCTGCGGCGAGGAAGCATGCGGGC
CGCCGTAACTACTGACAGGGTGTTTCGTCGCTGTACCATTGTCACCTCCA
CTTCCACAACAGCAAGAAGGACGTTGAACCCCACCTCCACCGCGTTGCCC
ACACAAGTCAGAAAGTGGGAGCAGCAGCAGCAACAACAACATCTGCACCA
GCAACAGCATGGAGGGCTCTTGGGCACTAGGAGCAGCAGATTAGTAGCCT
CGTCCTCTTCTTCCTCCTCCATCAACAACCCCAACCGCTTGGGTCTAGGT
CTCGCCGCGGCTGCTGTTGCCCTCGGCCTGATCAATGAACGAGAGGATTT
GCCAGCGGAGGCCTGTGGGATAGTGGGTGTGGTGGGAGGGGAGGATGCCC
GTGCGATTTTGCTGGAAGGGCTTAATGTGCTACAGAACAGAGGTTACGAT
TCTGCCGGTATTGCGACTATTTCTCCGGATCGGAATGAATTGACTGTAAC
GAAATATGCCTCGGCAGGTTCTACGCATGATTGTATTGAGTTGGTCAAAG
AGAACAGCCACCGCCACAAGGGTCATCATTTAGGGATTGCTCATACGCGT
TGGGCGACTCATGGAGGGAAGACGGATGAGAACGCGCACCCGCACACGGA
TGCCAAAGGAAGGGTGGCTGTGGTGCACAATGGCACGATTACGAATTCGC
ATGAGTTGCGCTCGGAGTTACAGAAGACGAAAGGGATAAAGTTCGAGTCA
GAGACTGACACGGAGATCATTGCGCAACTGATCGGCTTGGGACTGGACCA
GAATTTAAGTTTGAAGGAGGCGGTGGAAGAGGCATTAAAACTCTGCGATG
GGACGTGGGGTTTGGTGGTCCTCTCACCAAAGGAGCCGGATGAGTTGGTG
GTGGCTTGTAACGGCTCCCCCATGGTGTTGGGGATTGGCGAAGGCCGCGT
ATTCATCGCATCCGAGACCTCGGCATTTAACCGCCACACCAAGAATTTCA
TTGCGCTCAAGGATGGGGAAATCGGCGTGGTTCGTGCCGACGGGTCCACG
TTGGATTTGTCCCGCGTCCAAAAGGCACCGGAGGTGAACATTTTGTTGTC
CCCTGATCCTTACCCGCATTGGACTATTCGAGAGTGCCTAGAGCAGCCCG
AGGCGATCGCCCGTGCCTTGGGCTTTGGCGGGCGCATGAGTGACACGCGC
GTCTTCCTGGGGGGCTTAGACAGGCAGAAGGACCGGATGAAGAGCATCGA
GAACCTGGTCATGACGGGGTGTGGAACTAGTCTACATGCGGCCATGTACG
CCGCCAAGCTTATGCGGGAATTTGAGGCGTTTCGGACCGTTACAGCCGTG
GACGCCGCGGAGGTCCGTTTATCAGACCTGCCAAAACATCATGCGGGCCT
GTTGGCAATCTCCCAGTCGGGCGAGACGAAGGACGTGCACCGGGCAGTGG
TCCTCGCGGATCGCCTTGGGCTTCCGACCATGTCGGTAGTCAATACGGTA
GGGTCCCTCATTGCGCGTACGACCAAGCTCGGCGTTTATCTCAACGCAGG
GCGCGAGTCTTCCGTGGCAAGCACGAAGGCTTTTACCACCCAAGTGACGG
TGTTGACGCTGATCACGGCCTGGTTTAGGCAGGTGAGGGAGGAAGCAGGC
GAGGAGGCATTGCCTGGACGTGTCACGGAGTTGTTGGAAGCCCTTCAACG
CATGCCAATCGGTTTTGGGATGGCTCGTCGTACCCGGCAGCAGTGCGCGG
CGCTCGCGACGCGGCTGAAGGACAAAGAACACATTTTCTTATTGGGGAAA
GGGTATGCCGAGCCGATTGCGTTGGAGGGAGCGTTGAAGTTGAAGGAAAT
GGCGTATGTTCATGCGGAGGGCTATTCAGGGGGGGCTTTGAAACATGGTC
CCTTTGCATTGATTGAGGGGAAAGAAGGCAAGCAGGGTGCGACGCCGATT
ATTTGTTTAATCTTTGACGACGAACACGCCCATCATATGCGCACCGCTGC
AGAGGAAGTCAAGGCCCGTGGAGCCGATTTGATTGTTATCACGGACAACC
CGAAATTGGCGCGTGGCCTGGTCCCTGACCCTATCATCATTCCGAGTAAC
GGCCCCTTAACGGCGCTGATTGCAACCCTGCCGTTGCAGCTGTTAGCGTA
CGAACTGGCGATCTTGCGCGGAATTAATCCAGATAAGCCCAGGAACCTGG
CCAAGGCCGTGACAGTCGACTGA

Synonyms

Publications