jgi.p|Nanoce1779_2|598560, mRNA_7386 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598560
Unique NamemRNA_7386
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length703
Alignment locationscaffold_19:386428..388164 +

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Properties
Property NameValue
TranscriptId598646
TrackFilteredModels2
ProteinId598560
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:386428..388164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598560gene_7386Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598560mRNA_7386-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7386CDS_7386Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7386 ID=mRNA_7386|Name=jgi.p|Nanoce1779_2|598560|organism=Nannochloropsis oceanica|type=mRNA|length=703bp
CAGAAGAAAGCCCCTCGCCAACAATGAAGTTCTTCACCGCTGCCTCCCTC
CTCCTCGTCGCCGCCCTTGCGCAGGTGAGCATCGCCGCCAACTGTCCGGC
GGGTCTCAAATGCGCCGGCAATTCCAAGGAGCAGACCCTGCTGGTGGAGG
GCATTACCAATAATGCCTGCTTCGTCGTCAGCAAGTCCTACTGCCCTTTC
TGCATGCGCGCCAAGCAAGCCCTCAAGGCTGCAGGTGCCGACTGCGAGAT
CATCGAACTCGACCAGCGTACAGATGGCCAGGCTCTGCAACGGACTCTAG
CCGAGATGAGCGGCCGACGCACGGTGCCAAGTGTCTTCATTGGTGGGAAG
AGCATCGGTGGGTCGGATGACACGCTTGCCTTGCACGAGAAGGGAGAACT
CAAGCGCCTCCTCACTGCGGCCAAAGACCTTTAATCTCACATACTAAGCG
ATGAGTGAAGAGAAAAGCAAGAGGGAGAATTAGAAGCAAAATATTAATGT
GTAATGTCTATTTTTTCGTATTTCAACGGTTGGAATGGGAGAGAGATACG
CAGAAGGACAGGATTATAAAGATTATAAAGATAAAGTGCTTAGTATTCTA
GCAGACGGCTGGAGATGGCACGGATCGATCGAGTCGGTCAGAGCGATGAC
GATCTCTCGCAGGGGTGAGCAGGAAAGCTGGAAATTAAAAATCATATGAG
AAA
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protein sequence of jgi.p|Nanoce1779_2|598560

>mRNA_7386-protein ID=mRNA_7386-protein|Name=jgi.p|Nanoce1779_2|598560|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MKFFTAASLLLVAALAQVSIAANCPAGLKCAGNSKEQTLLVEGITNNACF
VVSKSYCPFCMRAKQALKAAGADCEIIELDQRTDGQALQRTLAEMSGRRT
VPSVFIGGKSIGGSDDTLALHEKGELKRLLTAAKDL*
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mRNA from alignment at scaffold_19:386428..388164+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7386 ID=mRNA_7386|Name=jgi.p|Nanoce1779_2|598560|organism=Nannochloropsis oceanica|type=mRNA|length=1737bp|location=Sequence derived from alignment at scaffold_19:386428..388164+ (Nannochloropsis oceanica)
CAGAAGAAAGCCCCTCGCCAACAATGAAGTTCTTCACCGCTGCCTCCCTC
CTCCTCGTCGCCGCCCTTGCGCAGGTAAGACCACTTGAGCCCGGGTGCCA
TGCATGGATGCCTGTGTCATAAGACTGTGCCAGGTGGTACCCGGGGAAGG
GAAGGACGGCTCGACTAGCTGTGTATTGTAGGGTGCGCGTCGTCGATCAA
GACGACGACATCGTCACGTTGATTGTTTTTCGTGCTTCTCCTTCCCCTCC
AAGTTGTCCGCTCAGAGAAAAGGCAATTTCGTACGAAAACCAACCAGCTT
CTATCTGTCCTCAGATGTGTCCTAGCTGGACTAGGGGCGGCATGTGGGAT
GATTGCTTTATCACGGTGCCCAGATAAGCCTGCCTTCTCCGCCTATGCAA
ACCTTTCGAATTTCCCTACCACCACACCTGCAGTGTGCTGTCTCTATCTC
TTTTTCACCATCTCTGAAGTTCTTCTCACGTCACCCACGCACCGTCACTC
ACTTAAACATACCATAATGCCATACGCGCAGGTGAGCATCGCCGCCAACT
GTCCGGCGGGTCTCAAATGCGCCGGCAATGTGAGTATTTCAGGAGAGAGA
GGGGGAGGGAGGGAGAGAGGAGGGTAGGAGAGGGACATGTTTGTGATTAT
GTATGTGCGTGATTGTCTTATGTGTGGTAGGAAGATGGTGTGAACAGATG
TGCTTGTGTAACGGGGAATGCCTGCATGTTTGTCTCATTCACCCGGTCGG
TCTTATTTTTTCTCTCCTTGTTAGTTGATGTTATGAGTCTTTCTTATTTG
TTCCTTCGTATGCATCGATCTACACACCGACACTAACACCGAGATACACA
TAAAACAGTCCAAGGAGCAGACCCTGCTGGTGGAGGGCATTACCAATAAT
GCCTGCTTCGTCGTCAGCAAGTCCTACTGGTACGTATGCATACATGCATA
TATATCTATACATGTATATGTGTATATTTACTTGTTTATGAACACGATCA
CCACGAAGTAAACAAAAACCGATTCGTCTACCCCTTCTTCAAATCCCCAC
ATCAAAAGCCCTTTCTGCATGCGCGCCAAGCAAGCCCTCAAGGCTGCAGG
TGCCGACTGCGAGATCATCGAACTCGACCAGCGTACAGATGGCCAGGCTC
TGCAACGGACTCTAGCCGAGATGAGCGGCCGACGCACGGTGCCAAGTGTC
TTCATTGGTGGGAAGAGCATCGGTGGGTCGGATGACACGGTACGTCATAT
TTTTAAAATGCATATTCATTTACTTGAATATTGGATATTTTTTTGATTTA
TTTCAATAAATATTAAAAAAGTGTCCCAGTCGACTCACCTTTTCTACTTC
CCCCTTTCCTCCTTCTCTACCTTATTCCCTGACACTCCTATGACCACTAC
GTCAACAGCTTGCCTTGCACGAGAAGGGAGAACTCAAGCGCCTCCTCACT
GCGGCCAAAGACCTTTAATCTCACATACTAAGCGATGAGTGAAGAGAAAA
GCAAGAGGGAGAATTAGAAGCAAAATATTAATGTGTAATGTCTATTTTTT
CGTATTTCAACGGTTGGAATGGGAGAGAGATACGCAGAAGGACAGGATTA
TAAAGATTATAAAGATAAAGTGCTTAGTATTCTAGCAGACGGCTGGAGAT
GGCACGGATCGATCGAGTCGGTCAGAGCGATGACGATCTCTCGCAGGGGT
GAGCAGGAAAGCTGGAAATTAAAAATCATATGAGAAA
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Coding sequence (CDS) from alignment at scaffold_19:386428..388164+

>mRNA_7386 ID=mRNA_7386|Name=jgi.p|Nanoce1779_2|598560|organism=Nannochloropsis oceanica|type=CDS|length=2055bp|location=Sequence derived from alignment at scaffold_19:386428..388164+ (Nannochloropsis oceanica)
ATGAAGTTCTTCACCGCTGCCTCCCTCCTCCTCGTCGCCGCCCTTGCGCA
GGTGAGCATCGCCGCCAACTGTCCGGCGGGTCTCAAATGCGCCGGCAATT
CCAAGGAGCAGACCCTGCTGGTGGAGGGCATTACCAATAATGCCTGCTTC
GTCGTCAGCAAGTCCTACTGCCCTTTCTGCATGCGCGCCAAGCAAGCCCT
CAAGGCTGCAGGTGCCGACTGCGAGATCATCGAACTCGACCAGCGTACAG
ATGGCCAGGCTCTGCAACGGACTCTAGCCGAGATGAGCGGCCGACGCACG
GTGCCAAGTGTCTTCATTGGTGGGAAGAGCATCGGTGGGTCGGATGACAC
GCTTGCCTTGCACGAGAAGGGAGAACTCAAGCGCCTCCTCACTGCGGCCA
AAGACCTTTAAATGAAGTTCTTCACCGCTGCCTCCCTCCTCCTCGTCGCC
GCCCTTGCGCAGGTGAGCATCGCCGCCAACTGTCCGGCGGGTCTCAAATG
CGCCGGCAATTCCAAGGAGCAGACCCTGCTGGTGGAGGGCATTACCAATA
ATGCCTGCTTCGTCGTCAGCAAGTCCTACTGCCCTTTCTGCATGCGCGCC
AAGCAAGCCCTCAAGGCTGCAGGTGCCGACTGCGAGATCATCGAACTCGA
CCAGCGTACAGATGGCCAGGCTCTGCAACGGACTCTAGCCGAGATGAGCG
GCCGACGCACGGTGCCAAGTGTCTTCATTGGTGGGAAGAGCATCGGTGGG
TCGGATGACACGCTTGCCTTGCACGAGAAGGGAGAACTCAAGCGCCTCCT
CACTGCGGCCAAAGACCTTTAAATGAAGTTCTTCACCGCTGCCTCCCTCC
TCCTCGTCGCCGCCCTTGCGCAGGTGAGCATCGCCGCCAACTGTCCGGCG
GGTCTCAAATGCGCCGGCAATTCCAAGGAGCAGACCCTGCTGGTGGAGGG
CATTACCAATAATGCCTGCTTCGTCGTCAGCAAGTCCTACTGCCCTTTCT
GCATGCGCGCCAAGCAAGCCCTCAAGGCTGCAGGTGCCGACTGCGAGATC
ATCGAACTCGACCAGCGTACAGATGGCCAGGCTCTGCAACGGACTCTAGC
CGAGATGAGCGGCCGACGCACGGTGCCAAGTGTCTTCATTGGTGGGAAGA
GCATCGGTGGGTCGGATGACACGCTTGCCTTGCACGAGAAGGGAGAACTC
AAGCGCCTCCTCACTGCGGCCAAAGACCTTTAAATGAAGTTCTTCACCGC
TGCCTCCCTCCTCCTCGTCGCCGCCCTTGCGCAGGTGAGCATCGCCGCCA
ACTGTCCGGCGGGTCTCAAATGCGCCGGCAATTCCAAGGAGCAGACCCTG
CTGGTGGAGGGCATTACCAATAATGCCTGCTTCGTCGTCAGCAAGTCCTA
CTGCCCTTTCTGCATGCGCGCCAAGCAAGCCCTCAAGGCTGCAGGTGCCG
ACTGCGAGATCATCGAACTCGACCAGCGTACAGATGGCCAGGCTCTGCAA
CGGACTCTAGCCGAGATGAGCGGCCGACGCACGGTGCCAAGTGTCTTCAT
TGGTGGGAAGAGCATCGGTGGGTCGGATGACACGCTTGCCTTGCACGAGA
AGGGAGAACTCAAGCGCCTCCTCACTGCGGCCAAAGACCTTTAAATGAAG
TTCTTCACCGCTGCCTCCCTCCTCCTCGTCGCCGCCCTTGCGCAGGTGAG
CATCGCCGCCAACTGTCCGGCGGGTCTCAAATGCGCCGGCAATTCCAAGG
AGCAGACCCTGCTGGTGGAGGGCATTACCAATAATGCCTGCTTCGTCGTC
AGCAAGTCCTACTGCCCTTTCTGCATGCGCGCCAAGCAAGCCCTCAAGGC
TGCAGGTGCCGACTGCGAGATCATCGAACTCGACCAGCGTACAGATGGCC
AGGCTCTGCAACGGACTCTAGCCGAGATGAGCGGCCGACGCACGGTGCCA
AGTGTCTTCATTGGTGGGAAGAGCATCGGTGGGTCGGATGACACGCTTGC
CTTGCACGAGAAGGGAGAACTCAAGCGCCTCCTCACTGCGGCCAAAGACC
TTTAA
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Synonyms
Publications