jgi.p|Nanoce1779_2|133232, mRNA_7385 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|133232
Unique Name	mRNA_7385
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1730
Alignment location	scaffold_19:383891..386059 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	133318
Track	FilteredModels2
ProteinId	133232

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:383891..386059 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|133232	gene_7385	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|133232	mRNA_7385-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7385	CDS_7385	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:383891..386059+
coding sequence from alignment at scaffold_19:383891..386059+

mRNA sequence

>mRNA_7385 ID=mRNA_7385|Name=jgi.p|Nanoce1779_2|133232|organism=Nannochloropsis oceanica|type=mRNA|length=1730bp
CACGCAGGAGACCAGGAAGTGCACGGTGACTATGATTCTGGGTGGGGGTA
GTCGCAGCGGGGCTGGGAGTAGAGGAAACAGCAGCAGCGGCGGCTCGCGA
GGTCCAAAGGAGGTAAAGAGCAAACCCAGGCGCTTTCACCCAGAGCGCAC
GAGGACGTTAAGATGAGAAAGAGAGGAGTGTGGAGGAGAGATATCTTGAC
AGATACGTGATGCACTGTACCTCAACAGCCACCACACGAGCACAGTAGAG
AGCAATTACTCTGACCTCCTCATGATCACCCTCCCTTCCTCCCTACCTCC
CTCCCCTCCACATACAGACGGTCTACCACTACGGCTTCAACCAAGATGCA
AGTTGTGTCGCCCTTGGATCCTCTCGTGGGTTCTCCGTCTTCAACACTCA
CCCTTTCCGCCCTTCCCTTCACGAGAGCGTGGGTGGGGTAGGAATTGTCG
AGATGTTGTATTGCACCTCTCTGTTGGCATTGGTAGGAGCAGGGGACCAA
GCAGGGTTCTCGCCGCGATGCCTCAAGATATGGAATACCAAACGACAATC
CTCTCTGTTTGACGTGGCTTTCATGTCGAAGATTGTGGGAGTGAGATTGA
ACAGACGACGGTTGGTGGTGGCACTGGAGCGCGCTTTGTATATTTTTGGG
TTGGAAAAGATGGAGAAATTGCAAGAGCTGGAGATGGGGGAAAATAGGGG
TGGCTTGCTGGCCTTATCGGCACGGGAGGAGCCTAGCTATCTGGCCTACC
CCGGTCACGAGCCCGGCGTGGTCCTCCTCCATGACGTCCTCTCCCTTCGC
CTCATCAACAAGATTACCGCGCACAAGACAAAGTTGGCGGCCCTGGCGCT
CTCTTTGGACGGGTCCCTGCTCGCCACGGCCTCGGTGACGGGGACAGTAA
TTCGTGTCATGAGCGTGCCGGAAGGGAGGTGGTTGTACACACTGAGGCGA
GGTCGATCTTCCTGTACTATCTTCTCTCTCGCCTTCAACCACGCTGGCAC
CCGGCTAGCTGCCTCCAGTGATAAGGGCACCGTGCATATATTCCACCTTT
CCTCCTCCTCCTCCTCTTCCTCTGATACCGTTCCTCGTTCTCCCATCACC
TTGCAAAGCAACGGGAGCAGTATACCTGCTTCCTCCTCCTTTTCTTCTTC
CTTCTCCTCCAACGAAGCTCCCTCCTTTCCTCCTCCCTCCTTCCCTCCCT
GCTCCAGCCCCACCACCACTACTGGACTGCTCTCCTTCTCCCCTCATTCC
CGCCTTCCCACCTTCTCCCTCTCCAGCCTTGGTGTACCCAAGCAAGTGAC
TGATGTGGTGATGGGCGTAGAAGGTACTCGGTCCTTCGCTCAAGCCAGGC
TAAAAACACACTCAATTAACAACAACAAAGAAGGGGGAAAATGGGAAAAA
AATGTTTGTGCCCTTATCCCAAGTCGTGGCGGCAGCGGACTAGGGAGAGA
GGGAGGGAGGGAGGAGGGAGAGACATTGGTGGTGTTGACGGCGGAGGGGC
ACTGCTATCAGTATGCAGTGGATGTAAGAGAGGGAGGCGTGTGTAGATTA
GTAGATGAGAAAACGATGCTGCAGGAGGAGTCAGGGTCGCAAGCCGTGGC
ACAACGCTTGTTGAGTGGCTGGGCTTGAAGTACAGATAATTGCTTGAAGT
ATTTTGTAATAAAGAAGAGAACGAGAATATGGTTCTACTAAGAGCACGTT
GTTGCTTACGTACAAGGAAGTAATTGCCTT

protein sequence of jgi.p|Nanoce1779_2|133232

>mRNA_7385-protein ID=mRNA_7385-protein|Name=jgi.p|Nanoce1779_2|133232|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MLYCTSLLALVGAGDQAGFSPRCLKIWNTKRQSSLFDVAFMSKIVGVRLN
RRRLVVALERALYIFGLEKMEKLQELEMGENRGGLLALSAREEPSYLAYP
GHEPGVVLLHDVLSLRLINKITAHKTKLAALALSLDGSLLATASVTGTVI
RVMSVPEGRWLYTLRRGRSSCTIFSLAFNHAGTRLAASSDKGTVHIFHLS
SSSSSSSDTVPRSPITLQSNGSSIPASSSFSSSFSSNEAPSFPPPSFPPC
SSPTTTTGLLSFSPHSRLPTFSLSSLGVPKQVTDVVMGVEGTRSFAQARL
KTHSINNNKEGGKWEKNVCALIPSRGGSGLGREGGREEGETLVVLTAEGH
CYQYAVDVREGGVCRLVDEKTMLQEESGSQAVAQRLLSGWA*

mRNA from alignment at scaffold_19:383891..386059+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7385 ID=mRNA_7385|Name=jgi.p|Nanoce1779_2|133232|organism=Nannochloropsis oceanica|type=mRNA|length=2169bp|location=Sequence derived from alignment at scaffold_19:383891..386059+ (Nannochloropsis oceanica)
CACGCAGGAGACCAGGAAGTGCACGGTGACTATGATTCTGGGTGGGGGTA
GTCGCAGCGGGGCTGGGAGTAGAGGAAACAGCAGCAGCGGCGGCTCGCGA
GGTCCAAAGGAGGTAAAGAGCAAACCCAGGCGCTTTCACCCAGAGCGCAC
GAGGACGTTAAGATGAGAAAGAGAGGAGTGTGGAGGAGAGATATCTTGAC
AGATACGTGATGCACTGTACCTCAACAGCCACCACACGAGCACAGTAGAG
AGCAATTACTCTGACCTCCTCATGATCACCCTCCCTTCCTCCCTACCTCC
CTCCCCTCCACATACAGACGGTCTACCACTACGGCTTCAACCAAGATGCA
AGTTGTGTCGCCCTTGGATCCTCTCGTGGGTTCTCCGTCTTCAACACTCA
CCCTTTCCGCCCTTCCCTTCACGAGAGCGTGGGTGGGGTAGGAATTGTCG
AGATGTTGTATTGCACCTCTCTGTTGGCATTGGTAGGAGCAGGGGACCAA
GCAGGGTTCTCGCCGCGATGCCTCAAGATATGGAATACCAAACGACAATC
CTCTCTGTTTGACGTGGCTTTCATGTCGAAGATTGTGGGAGTGAGATTGA
ACAGACGACGGTTGGTGGTACGTTTTTCGCTCCTTCTCTCCCCCTTCTTC
CTTCTCTCCTTACCTTCTTTCCCCTCGCAATTCATTTCCCAACCTTTTAA
ATATTATTCTCCTCCCCCCCCCTGTCCCGTTCGCATTCACCATATTTTCC
GCCTTCCATCCTTATCTTGATCCCTCCCCCCCATACTCAGGTGGCACTGG
AGCGCGCTTTGTATATTTTTGGGTTGGAAAAGATGGAGAAATTGCAAGAG
CTGGAGATGGGGGAAAATAGGGGTGGCTTGCTGGCCTTATCGGCACGGGA
GGAGCCTAGGTATTAATTTAATTCTTTATCAATGTACTTCTTTACCAATT
TATTTATTTGTCAACTTGTTTATCTATTTATTTATCTATTATAAATGAAT
AAATTAATTATTTCACCATAATTATCTAATATTTAACAGCTATCTGGCCT
ACCCCGGTCACGAGCCCGGCGTGGTCCTCCTCCATGACGTCCTCTCCCTT
CGCCTCATCAACAAGATTACCGCGCACAAGACAAAGTTGGCGGCCCTGGC
GCTCTCTTTGGACGGGTCCCTGCTCGCCACGGCCTCGGTGACGGGGACAG
TAATTCGTGTCATGAGCGTGCCGGAAGGGAGGTGGTTGTACACACTGAGG
CGGTAAGCAGGGAGGGAGGAGGAGAGGGAGGGCAGGGGAAGGTACCAATG
CCTACCAAAAACGAGGATACGATGATGGCAACTAAAAATATAAATAACCC
GAGATTAAGACGCACATCCATTCTCACGTCAACCGCAGAGGTCGATCTTC
CTGTACTATCTTCTCTCTCGCCTTCAACCACGCTGGCACCCGGCTAGCTG
CCTCCAGTGATAAGGGCACCGTGCATATATTCCACCTTTCCTCCTCCTCC
TCCTCTTCCTCTGATACCGTTCCTCGTTCTCCCATCACCTTGCAAAGCAA
CGGGAGCAGTATACCTGCTTCCTCCTCCTTTTCTTCTTCCTTCTCCTCCA
ACGAAGCTCCCTCCTTTCCTCCTCCCTCCTTCCCTCCCTGCTCCAGCCCC
ACCACCACTACTGGACTGCTCTCCTTCTCCCCTCATTCCCGCCTTCCCAC
CTTCTCCCTCTCCAGCCTTGGTGTACCCAAGCAAGTGACTGATGTGGTGA
TGGGCGTAGAAGGTACTCGGTCCTTCGCTCAAGCCAGGCTAAAAACACAC
TCAATTAACAACAACAAAGAAGGGGGAAAATGGGAAAAAAATGTTTGTGC
CCTTATCCCAAGTCGTGGCGGCAGCGGACTAGGGAGAGAGGGAGGGAGGG
AGGAGGGAGAGACATTGGTGGTGTTGACGGCGGAGGGGCACTGCTATCAG
TATGCAGTGGATGTAAGAGAGGGAGGCGTGTGTAGATTAGTAGATGAGAA
AACGATGCTGCAGGAGGAGTCAGGGTCGCAAGCCGTGGCACAACGCTTGT
TGAGTGGCTGGGCTTGAAGTACAGATAATTGCTTGAAGTATTTTGTAATA
AAGAAGAGAACGAGAATATGGTTCTACTAAGAGCACGTTGTTGCTTACGT
ACAAGGAAGTAATTGCCTT

Coding sequence (CDS) from alignment at scaffold_19:383891..386059+

>mRNA_7385 ID=mRNA_7385|Name=jgi.p|Nanoce1779_2|133232|organism=Nannochloropsis oceanica|type=CDS|length=4704bp|location=Sequence derived from alignment at scaffold_19:383891..386059+ (Nannochloropsis oceanica)
ATGTTGTATTGCACCTCTCTGTTGGCATTGGTAGGAGCAGGGGACCAAGC
AGGGTTCTCGCCGCGATGCCTCAAGATATGGAATACCAAACGACAATCCT
CTCTGTTTGACGTGGCTTTCATGTCGAAGATTGTGGGAGTGAGATTGAAC
AGACGACGGTTGGTGGTGGCACTGGAGCGCGCTTTGTATATTTTTGGGTT
GGAAAAGATGGAGAAATTGCAAGAGCTGGAGATGGGGGAAAATAGGGGTG
GCTTGCTGGCCTTATCGGCACGGGAGGAGCCTAGCTATCTGGCCTACCCC
GGTCACGAGCCCGGCGTGGTCCTCCTCCATGACGTCCTCTCCCTTCGCCT
CATCAACAAGATTACCGCGCACAAGACAAAGTTGGCGGCCCTGGCGCTCT
CTTTGGACGGGTCCCTGCTCGCCACGGCCTCGGTGACGGGGACAGTAATT
CGTGTCATGAGCGTGCCGGAAGGGAGGTGGTTGTACACACTGAGGCGAGG
TCGATCTTCCTGTACTATCTTCTCTCTCGCCTTCAACCACGCTGGCACCC
GGCTAGCTGCCTCCAGTGATAAGGGCACCGTGCATATATTCCACCTTTCC
TCCTCCTCCTCCTCTTCCTCTGATACCGTTCCTCGTTCTCCCATCACCTT
GCAAAGCAACGGGAGCAGTATACCTGCTTCCTCCTCCTTTTCTTCTTCCT
TCTCCTCCAACGAAGCTCCCTCCTTTCCTCCTCCCTCCTTCCCTCCCTGC
TCCAGCCCCACCACCACTACTGGACTGCTCTCCTTCTCCCCTCATTCCCG
CCTTCCCACCTTCTCCCTCTCCAGCCTTGGTGTACCCAAGCAAGTGACTG
ATGTGGTGATGGGCGTAGAAGGTACTCGGTCCTTCGCTCAAGCCAGGCTA
AAAACACACTCAATTAACAACAACAAAGAAGGGGGAAAATGGGAAAAAAA
TGTTTGTGCCCTTATCCCAAGTCGTGGCGGCAGCGGACTAGGGAGAGAGG
GAGGGAGGGAGGAGGGAGAGACATTGGTGGTGTTGACGGCGGAGGGGCAC
TGCTATCAGTATGCAGTGGATGTAAGAGAGGGAGGCGTGTGTAGATTAGT
AGATGAGAAAACGATGCTGCAGGAGGAGTCAGGGTCGCAAGCCGTGGCAC
AACGCTTGTTGAGTGGCTGGGCTTGAATGTTGTATTGCACCTCTCTGTTG
GCATTGGTAGGAGCAGGGGACCAAGCAGGGTTCTCGCCGCGATGCCTCAA
GATATGGAATACCAAACGACAATCCTCTCTGTTTGACGTGGCTTTCATGT
CGAAGATTGTGGGAGTGAGATTGAACAGACGACGGTTGGTGGTGGCACTG
GAGCGCGCTTTGTATATTTTTGGGTTGGAAAAGATGGAGAAATTGCAAGA
GCTGGAGATGGGGGAAAATAGGGGTGGCTTGCTGGCCTTATCGGCACGGG
AGGAGCCTAGCTATCTGGCCTACCCCGGTCACGAGCCCGGCGTGGTCCTC
CTCCATGACGTCCTCTCCCTTCGCCTCATCAACAAGATTACCGCGCACAA
GACAAAGTTGGCGGCCCTGGCGCTCTCTTTGGACGGGTCCCTGCTCGCCA
CGGCCTCGGTGACGGGGACAGTAATTCGTGTCATGAGCGTGCCGGAAGGG
AGGTGGTTGTACACACTGAGGCGAGGTCGATCTTCCTGTACTATCTTCTC
TCTCGCCTTCAACCACGCTGGCACCCGGCTAGCTGCCTCCAGTGATAAGG
GCACCGTGCATATATTCCACCTTTCCTCCTCCTCCTCCTCTTCCTCTGAT
ACCGTTCCTCGTTCTCCCATCACCTTGCAAAGCAACGGGAGCAGTATACC
TGCTTCCTCCTCCTTTTCTTCTTCCTTCTCCTCCAACGAAGCTCCCTCCT
TTCCTCCTCCCTCCTTCCCTCCCTGCTCCAGCCCCACCACCACTACTGGA
CTGCTCTCCTTCTCCCCTCATTCCCGCCTTCCCACCTTCTCCCTCTCCAG
CCTTGGTGTACCCAAGCAAGTGACTGATGTGGTGATGGGCGTAGAAGGTA
CTCGGTCCTTCGCTCAAGCCAGGCTAAAAACACACTCAATTAACAACAAC
AAAGAAGGGGGAAAATGGGAAAAAAATGTTTGTGCCCTTATCCCAAGTCG
TGGCGGCAGCGGACTAGGGAGAGAGGGAGGGAGGGAGGAGGGAGAGACAT
TGGTGGTGTTGACGGCGGAGGGGCACTGCTATCAGTATGCAGTGGATGTA
AGAGAGGGAGGCGTGTGTAGATTAGTAGATGAGAAAACGATGCTGCAGGA
GGAGTCAGGGTCGCAAGCCGTGGCACAACGCTTGTTGAGTGGCTGGGCTT
GAATGTTGTATTGCACCTCTCTGTTGGCATTGGTAGGAGCAGGGGACCAA
GCAGGGTTCTCGCCGCGATGCCTCAAGATATGGAATACCAAACGACAATC
CTCTCTGTTTGACGTGGCTTTCATGTCGAAGATTGTGGGAGTGAGATTGA
ACAGACGACGGTTGGTGGTGGCACTGGAGCGCGCTTTGTATATTTTTGGG
TTGGAAAAGATGGAGAAATTGCAAGAGCTGGAGATGGGGGAAAATAGGGG
TGGCTTGCTGGCCTTATCGGCACGGGAGGAGCCTAGCTATCTGGCCTACC
CCGGTCACGAGCCCGGCGTGGTCCTCCTCCATGACGTCCTCTCCCTTCGC
CTCATCAACAAGATTACCGCGCACAAGACAAAGTTGGCGGCCCTGGCGCT
CTCTTTGGACGGGTCCCTGCTCGCCACGGCCTCGGTGACGGGGACAGTAA
TTCGTGTCATGAGCGTGCCGGAAGGGAGGTGGTTGTACACACTGAGGCGA
GGTCGATCTTCCTGTACTATCTTCTCTCTCGCCTTCAACCACGCTGGCAC
CCGGCTAGCTGCCTCCAGTGATAAGGGCACCGTGCATATATTCCACCTTT
CCTCCTCCTCCTCCTCTTCCTCTGATACCGTTCCTCGTTCTCCCATCACC
TTGCAAAGCAACGGGAGCAGTATACCTGCTTCCTCCTCCTTTTCTTCTTC
CTTCTCCTCCAACGAAGCTCCCTCCTTTCCTCCTCCCTCCTTCCCTCCCT
GCTCCAGCCCCACCACCACTACTGGACTGCTCTCCTTCTCCCCTCATTCC
CGCCTTCCCACCTTCTCCCTCTCCAGCCTTGGTGTACCCAAGCAAGTGAC
TGATGTGGTGATGGGCGTAGAAGGTACTCGGTCCTTCGCTCAAGCCAGGC
TAAAAACACACTCAATTAACAACAACAAAGAAGGGGGAAAATGGGAAAAA
AATGTTTGTGCCCTTATCCCAAGTCGTGGCGGCAGCGGACTAGGGAGAGA
GGGAGGGAGGGAGGAGGGAGAGACATTGGTGGTGTTGACGGCGGAGGGGC
ACTGCTATCAGTATGCAGTGGATGTAAGAGAGGGAGGCGTGTGTAGATTA
GTAGATGAGAAAACGATGCTGCAGGAGGAGTCAGGGTCGCAAGCCGTGGC
ACAACGCTTGTTGAGTGGCTGGGCTTGAATGTTGTATTGCACCTCTCTGT
TGGCATTGGTAGGAGCAGGGGACCAAGCAGGGTTCTCGCCGCGATGCCTC
AAGATATGGAATACCAAACGACAATCCTCTCTGTTTGACGTGGCTTTCAT
GTCGAAGATTGTGGGAGTGAGATTGAACAGACGACGGTTGGTGGTGGCAC
TGGAGCGCGCTTTGTATATTTTTGGGTTGGAAAAGATGGAGAAATTGCAA
GAGCTGGAGATGGGGGAAAATAGGGGTGGCTTGCTGGCCTTATCGGCACG
GGAGGAGCCTAGCTATCTGGCCTACCCCGGTCACGAGCCCGGCGTGGTCC
TCCTCCATGACGTCCTCTCCCTTCGCCTCATCAACAAGATTACCGCGCAC
AAGACAAAGTTGGCGGCCCTGGCGCTCTCTTTGGACGGGTCCCTGCTCGC
CACGGCCTCGGTGACGGGGACAGTAATTCGTGTCATGAGCGTGCCGGAAG
GGAGGTGGTTGTACACACTGAGGCGAGGTCGATCTTCCTGTACTATCTTC
TCTCTCGCCTTCAACCACGCTGGCACCCGGCTAGCTGCCTCCAGTGATAA
GGGCACCGTGCATATATTCCACCTTTCCTCCTCCTCCTCCTCTTCCTCTG
ATACCGTTCCTCGTTCTCCCATCACCTTGCAAAGCAACGGGAGCAGTATA
CCTGCTTCCTCCTCCTTTTCTTCTTCCTTCTCCTCCAACGAAGCTCCCTC
CTTTCCTCCTCCCTCCTTCCCTCCCTGCTCCAGCCCCACCACCACTACTG
GACTGCTCTCCTTCTCCCCTCATTCCCGCCTTCCCACCTTCTCCCTCTCC
AGCCTTGGTGTACCCAAGCAAGTGACTGATGTGGTGATGGGCGTAGAAGG
TACTCGGTCCTTCGCTCAAGCCAGGCTAAAAACACACTCAATTAACAACA
ACAAAGAAGGGGGAAAATGGGAAAAAAATGTTTGTGCCCTTATCCCAAGT
CGTGGCGGCAGCGGACTAGGGAGAGAGGGAGGGAGGGAGGAGGGAGAGAC
ATTGGTGGTGTTGACGGCGGAGGGGCACTGCTATCAGTATGCAGTGGATG
TAAGAGAGGGAGGCGTGTGTAGATTAGTAGATGAGAAAACGATGCTGCAG
GAGGAGTCAGGGTCGCAAGCCGTGGCACAACGCTTGTTGAGTGGCTGGGC
TTGA

Synonyms

Publications