jgi.p|Nanoce1779_2|598550, mRNA_7384 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598550
Unique NamemRNA_7384
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length813
Alignment locationscaffold_19:383075..383887 +

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Properties
Property NameValue
TranscriptId598636
TrackFilteredModels2
ProteinId598550
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:383075..383887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598550gene_7384Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598550mRNA_7384-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7384CDS_7384Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7384 ID=mRNA_7384|Name=jgi.p|Nanoce1779_2|598550|organism=Nannochloropsis oceanica|type=mRNA|length=813bp
GGAGGGCGGGGAGGAGGACGAGAGGGAGGGAGAGAGCAGTGATGATGAGC
GGTCGAAGGACGAGGAGGAGGAGAGGGAGGAGGAGAGGGAGAGGAAGGAC
AGAAGGGAGGGAGGGAGGGAGGTGGGAAAGCAGAGGGAGAAGGTGGAGTG
ACAATACAGTGGTGGGTCTGGTGTATGCGTGGAGGGGCAGAATGAAGAAG
ACAGAGGTTCAGGTCGACTGCTCGAAAACAGGAAGGAGAGGGAAAAAAAG
AAAGAGGGGGAGAGGCAGGGAAGCGAAAGAGAGAGGTGCTCCTCCTCTCT
ACCTTACCATACACACTACATTCAACCCGGCAATGAGATATGCACGCAGA
ATGAACGAGCGAGAAAACACAGGCACGCACATAAATCACACAAAACGCAA
GGGGGAAGAGGAGGACGACGAGAAAGAGGAGGAGGGGGAAGAGGAAAATT
GTTATGGCAGCAGAAATAAGCAGGGATTTGTGCTTGCTTGCCCCTCCATC
CTCAATTTACTCCCCGCCTTCCCAGAACAAACCAAAAACTCAGACATACA
ATATGAACGGCTTTCTTTCTCTCCTCTTTGGTTTCCTTCTAATTTCAAGC
GTACGCATGATGTTTGCTTCCATGAAAACGTGTGTGATGGGACGAGCTCG
GTTTTTGGGGGGTGGGGATGAGGGAGCGTACACACGCGTACACACAAGTC
GTCGTCGGCCTTTCAAGTTGATGCTTCAACCTCGTATCAGGGCCATGGCG
TGCCGCATTCTCATGATCAAGATTCCTCAGAACTAAAGCACCCACGACTC
GAAACACATGAAA
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protein sequence of jgi.p|Nanoce1779_2|598550

>mRNA_7384-protein ID=mRNA_7384-protein|Name=jgi.p|Nanoce1779_2|598550|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MMSGRRTRRRRGRRRGRGRTEGREGGRWESRGRRWSDNTVVGLVYAWRGR
MKKTEVQVDCSKTGRRGKKRKRGRGREAKERGAPPLYLTIHTTFNPAMRY
ARRMNERENTGTHINHTKRKGEEEDDEKEEEGEEENCYGSRNKQGFVLAC
PSILNLLPAFPEQTKNSDIQYERLSFSPLWFPSNFKRTHDVCFHENVCDG
TSSVFGGWG*
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mRNA from alignment at scaffold_19:383075..383887+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7384 ID=mRNA_7384|Name=jgi.p|Nanoce1779_2|598550|organism=Nannochloropsis oceanica|type=mRNA|length=813bp|location=Sequence derived from alignment at scaffold_19:383075..383887+ (Nannochloropsis oceanica)
GGAGGGCGGGGAGGAGGACGAGAGGGAGGGAGAGAGCAGTGATGATGAGC
GGTCGAAGGACGAGGAGGAGGAGAGGGAGGAGGAGAGGGAGAGGAAGGAC
AGAAGGGAGGGAGGGAGGGAGGTGGGAAAGCAGAGGGAGAAGGTGGAGTG
ACAATACAGTGGTGGGTCTGGTGTATGCGTGGAGGGGCAGAATGAAGAAG
ACAGAGGTTCAGGTCGACTGCTCGAAAACAGGAAGGAGAGGGAAAAAAAG
AAAGAGGGGGAGAGGCAGGGAAGCGAAAGAGAGAGGTGCTCCTCCTCTCT
ACCTTACCATACACACTACATTCAACCCGGCAATGAGATATGCACGCAGA
ATGAACGAGCGAGAAAACACAGGCACGCACATAAATCACACAAAACGCAA
GGGGGAAGAGGAGGACGACGAGAAAGAGGAGGAGGGGGAAGAGGAAAATT
GTTATGGCAGCAGAAATAAGCAGGGATTTGTGCTTGCTTGCCCCTCCATC
CTCAATTTACTCCCCGCCTTCCCAGAACAAACCAAAAACTCAGACATACA
ATATGAACGGCTTTCTTTCTCTCCTCTTTGGTTTCCTTCTAATTTCAAGC
GTACGCATGATGTTTGCTTCCATGAAAACGTGTGTGATGGGACGAGCTCG
GTTTTTGGGGGGTGGGGATGAGGGAGCGTACACACGCGTACACACAAGTC
GTCGTCGGCCTTTCAAGTTGATGCTTCAACCTCGTATCAGGGCCATGGCG
TGCCGCATTCTCATGATCAAGATTCCTCAGAACTAAAGCACCCACGACTC
GAAACACATGAAA
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Coding sequence (CDS) from alignment at scaffold_19:383075..383887+

>mRNA_7384 ID=mRNA_7384|Name=jgi.p|Nanoce1779_2|598550|organism=Nannochloropsis oceanica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_19:383075..383887+ (Nannochloropsis oceanica)
ATGATGAGCGGTCGAAGGACGAGGAGGAGGAGAGGGAGGAGGAGAGGGAG
AGGAAGGACAGAAGGGAGGGAGGGAGGGAGGTGGGAAAGCAGAGGGAGAA
GGTGGAGTGACAATACAGTGGTGGGTCTGGTGTATGCGTGGAGGGGCAGA
ATGAAGAAGACAGAGGTTCAGGTCGACTGCTCGAAAACAGGAAGGAGAGG
GAAAAAAAGAAAGAGGGGGAGAGGCAGGGAAGCGAAAGAGAGAGGTGCTC
CTCCTCTCTACCTTACCATACACACTACATTCAACCCGGCAATGAGATAT
GCACGCAGAATGAACGAGCGAGAAAACACAGGCACGCACATAAATCACAC
AAAACGCAAGGGGGAAGAGGAGGACGACGAGAAAGAGGAGGAGGGGGAAG
AGGAAAATTGTTATGGCAGCAGAAATAAGCAGGGATTTGTGCTTGCTTGC
CCCTCCATCCTCAATTTACTCCCCGCCTTCCCAGAACAAACCAAAAACTC
AGACATACAATATGAACGGCTTTCTTTCTCTCCTCTTTGGTTTCCTTCTA
ATTTCAAGCGTACGCATGATGTTTGCTTCCATGAAAACGTGTGTGATGGG
ACGAGCTCGGTTTTTGGGGGGTGGGGATGA
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Synonyms
Publications