jgi.p|Nanoce1779_2|641095, mRNA_7382 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|641095
Unique NamemRNA_7382
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1797
Alignment locationscaffold_19:377195..378991 -

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Properties
Property NameValue
TranscriptId641181
TrackFilteredModels2
ProteinId641095
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:377195..378991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641095gene_7382Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7382CDS_7382Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641095mRNA_7382-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7382 ID=mRNA_7382|Name=jgi.p|Nanoce1779_2|641095|organism=Nannochloropsis oceanica|type=mRNA|length=1797bp
ATGGTGGACAGCCTGTCGCACACTCTGCCCTTTCCCCCCTTCTCCGTGGA
TTGGGTCGATGCTCACAACCTGATCGTTACGGGCGGCGGTGGGGCCAGCA
AGACAGGAGTTCCTAATGGTGTTTTGCTTTACATGGTCCGTGGAGGGGTG
CAACGGCTGGTGCAACGCCGATTTTACCAGACTGGGGACGAACTCCCCTA
TTTCTCCAAAGCTCTCCCTGCCTTAGACCTGCTGGCTATCGCAGTAGGGA
ATCGAGTGCAGTTGCTGCGGTTGCATGATTTGAAGCCGCTAGGAAAGCCA
GTGTTGGAACTGACACCGAACCCTAATGTCATGGACCCTACTATGGTGAT
TGCTTTTTTTGCTCCTTCCACGAATGCTGCCAGGACGGGGGGAGCGACAG
GGGCAGGAGGAGTCATGTCTGGGCCGGGAAACAGCAGCAGCGGCGATGAA
GGAAGAAATTATCTAGCTATCGGGGCTCATGATGGATATATTCGTGTGCT
GGAGCTAACGTTTGGTCAAGGGCCACCACAGCGGCTAAGCAGTAGCAGCA
GTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCGGCGGC
GGCGCCAGGACACCAGTGGTGGCGAGCATAGGGATCACGCCTTTGGCGAC
AGACAAGCCTTTCCGAGACCTTGCATTTCATCCGTCTGGACGCTTGGTGC
TGGGTTCGTGCGAGGATGGGACGTGGCGTGCGTTTTGGGTGGGGCAAAGA
CGGCAGCACCACCACCAGCAGCGGCTGGTGGAGCTTACACCATCATTCAC
TCTCTTCGCAGCAAGCAACGGAGCTTTGGTAGGTGGAGATGCAGCAGGAG
CAACTGCTTCAGCAGTTTCAAAAGACCAACAAGGCAGTATGCTGCACTAC
ACGTCACGCTGTGGTCAGTTCTCAGAAGACGGAAAGCATCTTTTCACTGT
TCACTTCGTTCGTAGAGGTCCCAAAAACGCAGACAAGCGCCCAGTGCTCA
CAAAATGGGCTGTCAATCTCACCAGCGGGGGAGAGAGGGAAGGAGAGCAG
GCGCAAGTGCATGTGAGAGTGGTCAAGACCGTGAGGCTAGGCGGGGTAAG
CCCCATTATGTGCATTAATTTAAGGGGAGCAGTCGGAGTAGCTGGGGACT
GCAGTGGCCGAACGATCATCTTTCAGACGAGTAATCTCTCCTGGAAATCT
CGGGATAAAATGCATAATTTTGGGGTGACTTCTCTGTCATTATATCCTCC
CCTCCCCCCCTCCTTCGGGCCCTCCCCGTCTGTGGAAGAGGAGGATGTGA
GGATTGCTTCGACTAGCGGTGATAAAACATTGAGACTACAGTATCTGCAT
CCTTCTCATGGAGGAATGAGTGGGTGTAGCAGCAGTAGTAGCAGCAGTAG
TAGAGAGAGGGGCTGGTTCTTGTCCATTCTCTTCTTCTTTTGGTGTCTGT
TATTGCTACTGTTGCTGCTGGGAGGGGTGTTTGTCGTACTTTCGATTGTG
TACGACCTTCCACTAGAGCGAGCGGTTGGCCATTTTTTCGGTGGTCTTTA
CGAGGTCAGTGCTTGGGAAGGGTTGAAGGAGGTGGCGAGGAAGGGATGGA
AGGAGAGTTTGGTCAAGTTAGGGGTGTCGGAACAGGCGAAGATGAGGATG
GAGGAGGGGATGAGGACGAGATGGAGGGAGGGGTGGGAGGTGGTGGAGGC
GGTGGAAGGGTGGGTGAAGGCTGAGGTGTTGCCGGCGGTGGTTCCAATGA
TTGTGAAAGCGAAGGAGAGGGTAGACGGGTGGAGGGGGGAATTGTAG
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protein sequence of jgi.p|Nanoce1779_2|641095

>mRNA_7382-protein ID=mRNA_7382-protein|Name=jgi.p|Nanoce1779_2|641095|organism=Nannochloropsis oceanica|type=polypeptide|length=599bp
MVDSLSHTLPFPPFSVDWVDAHNLIVTGGGGASKTGVPNGVLLYMVRGGV
QRLVQRRFYQTGDELPYFSKALPALDLLAIAVGNRVQLLRLHDLKPLGKP
VLELTPNPNVMDPTMVIAFFAPSTNAARTGGATGAGGVMSGPGNSSSGDE
GRNYLAIGAHDGYIRVLELTFGQGPPQRLSSSSSSSSSSSSSSSSRSSGG
GARTPVVASIGITPLATDKPFRDLAFHPSGRLVLGSCEDGTWRAFWVGQR
RQHHHQQRLVELTPSFTLFAASNGALVGGDAAGATASAVSKDQQGSMLHY
TSRCGQFSEDGKHLFTVHFVRRGPKNADKRPVLTKWAVNLTSGGEREGEQ
AQVHVRVVKTVRLGGVSPIMCINLRGAVGVAGDCSGRTIIFQTSNLSWKS
RDKMHNFGVTSLSLYPPLPPSFGPSPSVEEEDVRIASTSGDKTLRLQYLH
PSHGGMSGCSSSSSSSSRERGWFLSILFFFWCLLLLLLLLGGVFVVLSIV
YDLPLERAVGHFFGGLYEVSAWEGLKEVARKGWKESLVKLGVSEQAKMRM
EEGMRTRWREGWEVVEAVEGWVKAEVLPAVVPMIVKAKERVDGWRGEL*
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mRNA from alignment at scaffold_19:377195..378991-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7382 ID=mRNA_7382|Name=jgi.p|Nanoce1779_2|641095|organism=Nannochloropsis oceanica|type=mRNA|length=1797bp|location=Sequence derived from alignment at scaffold_19:377195..378991- (Nannochloropsis oceanica)
ATGGTGGACAGCCTGTCGCACACTCTGCCCTTTCCCCCCTTCTCCGTGGA
TTGGGTCGATGCTCACAACCTGATCGTTACGGGCGGCGGTGGGGCCAGCA
AGACAGGAGTTCCTAATGGTGTTTTGCTTTACATGGTCCGTGGAGGGGTG
CAACGGCTGGTGCAACGCCGATTTTACCAGACTGGGGACGAACTCCCCTA
TTTCTCCAAAGCTCTCCCTGCCTTAGACCTGCTGGCTATCGCAGTAGGGA
ATCGAGTGCAGTTGCTGCGGTTGCATGATTTGAAGCCGCTAGGAAAGCCA
GTGTTGGAACTGACACCGAACCCTAATGTCATGGACCCTACTATGGTGAT
TGCTTTTTTTGCTCCTTCCACGAATGCTGCCAGGACGGGGGGAGCGACAG
GGGCAGGAGGAGTCATGTCTGGGCCGGGAAACAGCAGCAGCGGCGATGAA
GGAAGAAATTATCTAGCTATCGGGGCTCATGATGGATATATTCGTGTGCT
GGAGCTAACGTTTGGTCAAGGGCCACCACAGCGGCTAAGCAGTAGCAGCA
GTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCGGCGGC
GGCGCCAGGACACCAGTGGTGGCGAGCATAGGGATCACGCCTTTGGCGAC
AGACAAGCCTTTCCGAGACCTTGCATTTCATCCGTCTGGACGCTTGGTGC
TGGGTTCGTGCGAGGATGGGACGTGGCGTGCGTTTTGGGTGGGGCAAAGA
CGGCAGCACCACCACCAGCAGCGGCTGGTGGAGCTTACACCATCATTCAC
TCTCTTCGCAGCAAGCAACGGAGCTTTGGTAGGTGGAGATGCAGCAGGAG
CAACTGCTTCAGCAGTTTCAAAAGACCAACAAGGCAGTATGCTGCACTAC
ACGTCACGCTGTGGTCAGTTCTCAGAAGACGGAAAGCATCTTTTCACTGT
TCACTTCGTTCGTAGAGGTCCCAAAAACGCAGACAAGCGCCCAGTGCTCA
CAAAATGGGCTGTCAATCTCACCAGCGGGGGAGAGAGGGAAGGAGAGCAG
GCGCAAGTGCATGTGAGAGTGGTCAAGACCGTGAGGCTAGGCGGGGTAAG
CCCCATTATGTGCATTAATTTAAGGGGAGCAGTCGGAGTAGCTGGGGACT
GCAGTGGCCGAACGATCATCTTTCAGACGAGTAATCTCTCCTGGAAATCT
CGGGATAAAATGCATAATTTTGGGGTGACTTCTCTGTCATTATATCCTCC
CCTCCCCCCCTCCTTCGGGCCCTCCCCGTCTGTGGAAGAGGAGGATGTGA
GGATTGCTTCGACTAGCGGTGATAAAACATTGAGACTACAGTATCTGCAT
CCTTCTCATGGAGGAATGAGTGGGTGTAGCAGCAGTAGTAGCAGCAGTAG
TAGAGAGAGGGGCTGGTTCTTGTCCATTCTCTTCTTCTTTTGGTGTCTGT
TATTGCTACTGTTGCTGCTGGGAGGGGTGTTTGTCGTACTTTCGATTGTG
TACGACCTTCCACTAGAGCGAGCGGTTGGCCATTTTTTCGGTGGTCTTTA
CGAGGTCAGTGCTTGGGAAGGGTTGAAGGAGGTGGCGAGGAAGGGATGGA
AGGAGAGTTTGGTCAAGTTAGGGGTGTCGGAACAGGCGAAGATGAGGATG
GAGGAGGGGATGAGGACGAGATGGAGGGAGGGGTGGGAGGTGGTGGAGGC
GGTGGAAGGGTGGGTGAAGGCTGAGGTGTTGCCGGCGGTGGTTCCAATGA
TTGTGAAAGCGAAGGAGAGGGTAGACGGGTGGAGGGGGGAATTGTAG
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Coding sequence (CDS) from alignment at scaffold_19:377195..378991-

>mRNA_7382 ID=mRNA_7382|Name=jgi.p|Nanoce1779_2|641095|organism=Nannochloropsis oceanica|type=CDS|length=1797bp|location=Sequence derived from alignment at scaffold_19:377195..378991- (Nannochloropsis oceanica)
ATGGTGGACAGCCTGTCGCACACTCTGCCCTTTCCCCCCTTCTCCGTGGA
TTGGGTCGATGCTCACAACCTGATCGTTACGGGCGGCGGTGGGGCCAGCA
AGACAGGAGTTCCTAATGGTGTTTTGCTTTACATGGTCCGTGGAGGGGTG
CAACGGCTGGTGCAACGCCGATTTTACCAGACTGGGGACGAACTCCCCTA
TTTCTCCAAAGCTCTCCCTGCCTTAGACCTGCTGGCTATCGCAGTAGGGA
ATCGAGTGCAGTTGCTGCGGTTGCATGATTTGAAGCCGCTAGGAAAGCCA
GTGTTGGAACTGACACCGAACCCTAATGTCATGGACCCTACTATGGTGAT
TGCTTTTTTTGCTCCTTCCACGAATGCTGCCAGGACGGGGGGAGCGACAG
GGGCAGGAGGAGTCATGTCTGGGCCGGGAAACAGCAGCAGCGGCGATGAA
GGAAGAAATTATCTAGCTATCGGGGCTCATGATGGATATATTCGTGTGCT
GGAGCTAACGTTTGGTCAAGGGCCACCACAGCGGCTAAGCAGTAGCAGCA
GTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCGGCGGC
GGCGCCAGGACACCAGTGGTGGCGAGCATAGGGATCACGCCTTTGGCGAC
AGACAAGCCTTTCCGAGACCTTGCATTTCATCCGTCTGGACGCTTGGTGC
TGGGTTCGTGCGAGGATGGGACGTGGCGTGCGTTTTGGGTGGGGCAAAGA
CGGCAGCACCACCACCAGCAGCGGCTGGTGGAGCTTACACCATCATTCAC
TCTCTTCGCAGCAAGCAACGGAGCTTTGGTAGGTGGAGATGCAGCAGGAG
CAACTGCTTCAGCAGTTTCAAAAGACCAACAAGGCAGTATGCTGCACTAC
ACGTCACGCTGTGGTCAGTTCTCAGAAGACGGAAAGCATCTTTTCACTGT
TCACTTCGTTCGTAGAGGTCCCAAAAACGCAGACAAGCGCCCAGTGCTCA
CAAAATGGGCTGTCAATCTCACCAGCGGGGGAGAGAGGGAAGGAGAGCAG
GCGCAAGTGCATGTGAGAGTGGTCAAGACCGTGAGGCTAGGCGGGGTAAG
CCCCATTATGTGCATTAATTTAAGGGGAGCAGTCGGAGTAGCTGGGGACT
GCAGTGGCCGAACGATCATCTTTCAGACGAGTAATCTCTCCTGGAAATCT
CGGGATAAAATGCATAATTTTGGGGTGACTTCTCTGTCATTATATCCTCC
CCTCCCCCCCTCCTTCGGGCCCTCCCCGTCTGTGGAAGAGGAGGATGTGA
GGATTGCTTCGACTAGCGGTGATAAAACATTGAGACTACAGTATCTGCAT
CCTTCTCATGGAGGAATGAGTGGGTGTAGCAGCAGTAGTAGCAGCAGTAG
TAGAGAGAGGGGCTGGTTCTTGTCCATTCTCTTCTTCTTTTGGTGTCTGT
TATTGCTACTGTTGCTGCTGGGAGGGGTGTTTGTCGTACTTTCGATTGTG
TACGACCTTCCACTAGAGCGAGCGGTTGGCCATTTTTTCGGTGGTCTTTA
CGAGGTCAGTGCTTGGGAAGGGTTGAAGGAGGTGGCGAGGAAGGGATGGA
AGGAGAGTTTGGTCAAGTTAGGGGTGTCGGAACAGGCGAAGATGAGGATG
GAGGAGGGGATGAGGACGAGATGGAGGGAGGGGTGGGAGGTGGTGGAGGC
GGTGGAAGGGTGGGTGAAGGCTGAGGTGTTGCCGGCGGTGGTTCCAATGA
TTGTGAAAGCGAAGGAGAGGGTAGACGGGTGGAGGGGGGAATTGTAG
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Synonyms
Publications