jgi.p|Nanoce1779_2|132697, mRNA_7378 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|132697
Unique Name	mRNA_7378
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1411
Alignment location	scaffold_19:366737..368147 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	132783
Track	FilteredModels2
ProteinId	132697

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:366737..368147 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|132697	gene_7378	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|132697	mRNA_7378-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7378	CDS_7378	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:366737..368147+
coding sequence from alignment at scaffold_19:366737..368147+

mRNA sequence

>mRNA_7378 ID=mRNA_7378|Name=jgi.p|Nanoce1779_2|132697|organism=Nannochloropsis oceanica|type=mRNA|length=1411bp
AGGTTTTGGGGAGAGTTGAATACACCTCCTATTGAGCTTGCAGGGGGGTA
CAGCATATGGGCCCACCCGCAATTTTTTTGTCAATTCTCCAAAAAACCAG
CACCGCAATGTGAACAGCATGGCGCCACGACGCCCCCTCTCACTATGTCC
ACCACCAGCATTACCGCTCTGAATGATGTATCTGACAGTCAGCATACCGG
CTGTTGCATTCTTTTCCCCCCACACTGCCCAATCATAGGTCACTTCATCA
TCATGGGCCAAACTCTCTCTACCTTGGGTGGGGTGGTGGGATACAAGCAC
GAGTACCGCACGGGTCCTGACGGCGTCGCTAAAACATTTGTCACTGTCCT
GGACACAAGCGTCTTCAAGAGGAAAATCAAGCTGCAGCTTGCCATTGTGC
ACGAGCCACAACAGGAAGAAGATTTTGCTACTGGTGCCGCCACTGCTGTC
GCGGCTGCTATCGCTGCTGCGACTGCTGAAGACAGAGAAGCAGCGCCTCG
CCTCGATTTGATCCAAGAAGCCGTCGATGACGAGTCCACTCAGCCTCCGG
CCGATGATGACCGACGAGAAGACCACGAACTCCCGCCCTTGGCCTTTGTG
GATGAAGAGGACGATAACAGCAGCACTACCAGCAGTACCAAGTTATACCC
GCAACCCTATCCTTCTCGCCGGGCCTTCTCCACTGGAACTGCGGACAAAG
CCCCAGAGATGACTATGATACCCTCGCGACAGTTGCGCCGAGCTCGACCC
CAGTCTGTGGGGGATCTTGGTAGCGGAACAGGAGGCAGGCTTTCAGTACA
GACAGTGTCGGATGTAGTGACCATTGCGGGAAGAAACGGCAAACAACGAA
TGATGAACCGCGTGCGGCTTAGTTTGCATGACCAGGAGGAAATTATATTG
ATTCCCGTGTGGCCGTCGTCGAAGGAGGAGGAGGAAGGGACGGAGGGAGG
CTTGGGAGGGGTGGATGGTGAGGGGAAGGATAAGGAGGACGACTTACGGG
CGCAGCGTCCAAGTCGTTGTCAATCAGTGACAGTTAGCCTGGATGCTAGA
GAGCAGCTGACAGAAGAGGGGAGAGCGCGGAGGAAGGAAGAGGGAGCGAA
AGGGAACGAAGAGGAGCAGAAGCTGAGCTTGGAGATCGAGCAGGTGGAGG
GCTTTCAACCCCTTGGTGTCATGACACATTATGCGGCCTCGGCGATAGCC
ACGTGAGTTTTTTTGTCGGCGGTATGGAATGCCTGCCTAGGGATAAACGG
TGTTTCTACCTCTTTTCTACCTCACGTCATGTACACATGCCTGTCTATAT
CTTCCCTCGCGTCAACAAGACGATGACCTCGCTCATTCTTCGCTTATCCC
TACCCTACTACTGATACAGTGTGACCACTAACGCCCAACTGGAGGCCGCC
GTTCTCCGTCT

protein sequence of jgi.p|Nanoce1779_2|132697

>mRNA_7378-protein ID=mRNA_7378-protein|Name=jgi.p|Nanoce1779_2|132697|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MSTTSITALNDVSDSQHTGCCILFPPHCPIIGHFIIMGQTLSTLGGVVGY
KHEYRTGPDGVAKTFVTVLDTSVFKRKIKLQLAIVHEPQQEEDFATGAAT
AVAAAIAAATAEDREAAPRLDLIQEAVDDESTQPPADDDRREDHELPPLA
FVDEEDDNSSTTSSTKLYPQPYPSRRAFSTGTADKAPEMTMIPSRQLRRA
RPQSVGDLGSGTGGRLSVQTVSDVVTIAGRNGKQRMMNRVRLSLHDQEEI
ILIPVWPSSKEEEEGTEGGLGGVDGEGKDKEDDLRAQRPSRCQSVTVSLD
AREQLTEEGRARRKEEGAKGNEEEQKLSLEIEQVEGFQPLGVMTHYAASA
IAT*

mRNA from alignment at scaffold_19:366737..368147+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7378 ID=mRNA_7378|Name=jgi.p|Nanoce1779_2|132697|organism=Nannochloropsis oceanica|type=mRNA|length=1411bp|location=Sequence derived from alignment at scaffold_19:366737..368147+ (Nannochloropsis oceanica)
AGGTTTTGGGGAGAGTTGAATACACCTCCTATTGAGCTTGCAGGGGGGTA
CAGCATATGGGCCCACCCGCAATTTTTTTGTCAATTCTCCAAAAAACCAG
CACCGCAATGTGAACAGCATGGCGCCACGACGCCCCCTCTCACTATGTCC
ACCACCAGCATTACCGCTCTGAATGATGTATCTGACAGTCAGCATACCGG
CTGTTGCATTCTTTTCCCCCCACACTGCCCAATCATAGGTCACTTCATCA
TCATGGGCCAAACTCTCTCTACCTTGGGTGGGGTGGTGGGATACAAGCAC
GAGTACCGCACGGGTCCTGACGGCGTCGCTAAAACATTTGTCACTGTCCT
GGACACAAGCGTCTTCAAGAGGAAAATCAAGCTGCAGCTTGCCATTGTGC
ACGAGCCACAACAGGAAGAAGATTTTGCTACTGGTGCCGCCACTGCTGTC
GCGGCTGCTATCGCTGCTGCGACTGCTGAAGACAGAGAAGCAGCGCCTCG
CCTCGATTTGATCCAAGAAGCCGTCGATGACGAGTCCACTCAGCCTCCGG
CCGATGATGACCGACGAGAAGACCACGAACTCCCGCCCTTGGCCTTTGTG
GATGAAGAGGACGATAACAGCAGCACTACCAGCAGTACCAAGTTATACCC
GCAACCCTATCCTTCTCGCCGGGCCTTCTCCACTGGAACTGCGGACAAAG
CCCCAGAGATGACTATGATACCCTCGCGACAGTTGCGCCGAGCTCGACCC
CAGTCTGTGGGGGATCTTGGTAGCGGAACAGGAGGCAGGCTTTCAGTACA
GACAGTGTCGGATGTAGTGACCATTGCGGGAAGAAACGGCAAACAACGAA
TGATGAACCGCGTGCGGCTTAGTTTGCATGACCAGGAGGAAATTATATTG
ATTCCCGTGTGGCCGTCGTCGAAGGAGGAGGAGGAAGGGACGGAGGGAGG
CTTGGGAGGGGTGGATGGTGAGGGGAAGGATAAGGAGGACGACTTACGGG
CGCAGCGTCCAAGTCGTTGTCAATCAGTGACAGTTAGCCTGGATGCTAGA
GAGCAGCTGACAGAAGAGGGGAGAGCGCGGAGGAAGGAAGAGGGAGCGAA
AGGGAACGAAGAGGAGCAGAAGCTGAGCTTGGAGATCGAGCAGGTGGAGG
GCTTTCAACCCCTTGGTGTCATGACACATTATGCGGCCTCGGCGATAGCC
ACGTGAGTTTTTTTGTCGGCGGTATGGAATGCCTGCCTAGGGATAAACGG
TGTTTCTACCTCTTTTCTACCTCACGTCATGTACACATGCCTGTCTATAT
CTTCCCTCGCGTCAACAAGACGATGACCTCGCTCATTCTTCGCTTATCCC
TACCCTACTACTGATACAGTGTGACCACTAACGCCCAACTGGAGGCCGCC
GTTCTCCGTCT

Coding sequence (CDS) from alignment at scaffold_19:366737..368147+

>mRNA_7378 ID=mRNA_7378|Name=jgi.p|Nanoce1779_2|132697|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at scaffold_19:366737..368147+ (Nannochloropsis oceanica)
ATGTCCACCACCAGCATTACCGCTCTGAATGATGTATCTGACAGTCAGCA
TACCGGCTGTTGCATTCTTTTCCCCCCACACTGCCCAATCATAGGTCACT
TCATCATCATGGGCCAAACTCTCTCTACCTTGGGTGGGGTGGTGGGATAC
AAGCACGAGTACCGCACGGGTCCTGACGGCGTCGCTAAAACATTTGTCAC
TGTCCTGGACACAAGCGTCTTCAAGAGGAAAATCAAGCTGCAGCTTGCCA
TTGTGCACGAGCCACAACAGGAAGAAGATTTTGCTACTGGTGCCGCCACT
GCTGTCGCGGCTGCTATCGCTGCTGCGACTGCTGAAGACAGAGAAGCAGC
GCCTCGCCTCGATTTGATCCAAGAAGCCGTCGATGACGAGTCCACTCAGC
CTCCGGCCGATGATGACCGACGAGAAGACCACGAACTCCCGCCCTTGGCC
TTTGTGGATGAAGAGGACGATAACAGCAGCACTACCAGCAGTACCAAGTT
ATACCCGCAACCCTATCCTTCTCGCCGGGCCTTCTCCACTGGAACTGCGG
ACAAAGCCCCAGAGATGACTATGATACCCTCGCGACAGTTGCGCCGAGCT
CGACCCCAGTCTGTGGGGGATCTTGGTAGCGGAACAGGAGGCAGGCTTTC
AGTACAGACAGTGTCGGATGTAGTGACCATTGCGGGAAGAAACGGCAAAC
AACGAATGATGAACCGCGTGCGGCTTAGTTTGCATGACCAGGAGGAAATT
ATATTGATTCCCGTGTGGCCGTCGTCGAAGGAGGAGGAGGAAGGGACGGA
GGGAGGCTTGGGAGGGGTGGATGGTGAGGGGAAGGATAAGGAGGACGACT
TACGGGCGCAGCGTCCAAGTCGTTGTCAATCAGTGACAGTTAGCCTGGAT
GCTAGAGAGCAGCTGACAGAAGAGGGGAGAGCGCGGAGGAAGGAAGAGGG
AGCGAAAGGGAACGAAGAGGAGCAGAAGCTGAGCTTGGAGATCGAGCAGG
TGGAGGGCTTTCAACCCCTTGGTGTCATGACACATTATGCGGCCTCGGCG
ATAGCCACGTGA

Synonyms

Publications