jgi.p|Nanoce1779_2|132568, mRNA_7372 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|132568
Unique Name	mRNA_7372
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1800
Alignment location	scaffold_19:351571..353370 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	132654
Track	FilteredModels2
ProteinId	132568

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:351571..353370 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|132568	gene_7372	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|132568	mRNA_7372-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7372	CDS_7372	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:351571..353370-
coding sequence from alignment at scaffold_19:351571..353370-

mRNA sequence

>mRNA_7372 ID=mRNA_7372|Name=jgi.p|Nanoce1779_2|132568|organism=Nannochloropsis oceanica|type=mRNA|length=1800bp
GGAAGATGCCCACTATGCACTCGCTGCATTTTGTGCACTCGCCACATCTT
TATCTAAAGATGTGCTGGATAGCCTGAAATCAAATGGACGCGATCATGAT
TCGTAGCTGCGACCTCCCCACCCTTTTCCTCTCACGCAAAACATAATGCA
CCACACTCACACGCTCACAGCGGCGTCGGGCAAAGGTCCAGGATGTATCA
CCCCCTCCACCATTCGGGAGAAGGTGACGGCGGGGGCGAGGACGAAGAGG
GCGACCAGAACCCGACATTCTCATCCCTCTACAATGGGGAGGAGGAGGAG
GAGGAGGAGGAGAAGCAGAAAGAGCAGCTCGCCCATCACGCACAACAGCA
CCAACATCATCTTTCGCCACGGAATTTTAATGAAGCCATCGTACCAGCGA
ATGCTGCTGCTTCCTTCTTTCCCACTCCTCCTCTTTTTTACCCGGCGCCA
TCGGGAGGAGGAGGAGATGAAGCCGAGGGTTTGGAGAGTCGGCAACAGCA
GCAGGAGCAGCGCTTCCATCACCAACATGAAGGCATGCATGTGTCTTCGA
CTTCCGTGTCAACGTCAGCGAACAAAGCCTTAAATCCTCCCACCACAACT
ACTACTTGTGACCACCATACTTTAACACCAAGCAGCAGTAGCAATAGCAG
CAGCAATAGCAGCGGCAGCAGCAGTGTCCGAAGTACCACCAGTCGCAATC
TAAACGTACCTGGTGCGGTGATTGTATTGGGCCAAGCATCTTTTACCCAT
GCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCACTCCCACCAAACGC
CACATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGA
GAGGAGGAATCACTACTTCGGGATCCCCTTATTCCTCCCCCTCTTCCCCG
TCCTCCACCTCAATGGTGCTGAGAGAATGCTTTGGCTTCTCTGCGGGTAG
AATCAAGGCCGGCGCTTCTCTCTTAGGGAAATTAAGTGCTATTTTGGAAG
AAGGAGGAAGGGTAGAAGCCCGTCCTGCAGCAGGAGTGGAGGGAGGGAGG
GAGGAAGGGAAGGAGGAAGATTTGGAAGAGGCAGCAGCGTTGGCGAGCGT
TGTGATGAGTGAGATGGGAGGAGATGCGCGAAAGGCTCGTTTTTTGCTCG
CGGCCTGTGCAGGAGGGGAGGGAGGGAGGGAGAAAGAGAGAGGTGAAAGC
GTGGGCGGTCGACTTCGCCGGGCCCTCAAAGCTTTTGCTGAGCCCCCTCC
AGTCTACCCCTCCCTCCCTCCCTCCTTCCTTCCACCCCACCTGATGATTG
TGGTGAAAGACCCTTCCGAGTGTTTGCGCCTGGCCAAGCGAGCAGTAGGA
TCAGGGCTGAGGGTGAGTGTAGCGCGCCACCCTTGCCATGTTCTGAGTGA
GGTGGTGGAGGAGGATGAAGTTTTTTTTCAGGGGATGGTCCTAGAAGCCG
ACTTTTCAGTGGTGTCCGGCCTGGAGGCAGCGATGAAGTTCCGGACATTG
CCTTCCCCAGGAGTGGGGGAAGGCAGGGGGAAGGAAGGGGGACAGGCACA
GTCAGCGACGGCGAACCTAATGATGGTGATGGTGGTGAATGGAAGTCCGC
ATGCCAATTATTCAGGTGCGTCTGCCTCCCTCTCTCCCTCCCTCCCTCCC
TCCTTCCCTTCCTCCCTTCCCCCGTCATTTCAAAAGTAAACCATCCACTC
AACCTCCGTCTGTCTATCTGTGCTTATTTCTCTTCTTCCTTCCTTCTCTC
CTTCTCTCCTACCTTTCCTTCCTCCTTCCTTCTCTTCCTCCCTCCTTCCT

protein sequence of jgi.p|Nanoce1779_2|132568

>mRNA_7372-protein ID=mRNA_7372-protein|Name=jgi.p|Nanoce1779_2|132568|organism=Nannochloropsis oceanica|type=polypeptide|length=499bp
MYHPLHHSGEGDGGGEDEEGDQNPTFSSLYNGEEEEEEEEKQKEQLAHHA
QQHQHHLSPRNFNEAIVPANAAASFFPTPPLFYPAPSGGGGDEAEGLESR
QQQQEQRFHHQHEGMHVSSTSVSTSANKALNPPTTTTTCDHHTLTPSSSS
NSSSNSSGSSSVRSTTSRNLNVPGAVIVLGQASFTHAPPPPPPPPPPALP
PNATSAAAAAAAAAAAAAARGGITTSGSPYSSPSSPSSTSMVLRECFGFS
AGRIKAGASLLGKLSAILEEGGRVEARPAAGVEGGREEGKEEDLEEAAAL
ASVVMSEMGGDARKARFLLAACAGGEGGREKERGESVGGRLRRALKAFAE
PPPVYPSLPPSFLPPHLMIVVKDPSECLRLAKRAVGSGLRVSVARHPCHV
LSEVVEEDEVFFQGMVLEADFSVVSGLEAAMKFRTLPSPGVGEGRGKEGG
QAQSATANLMMVMVVNGSPHANYSGASASLSPSLPPSFPSSLPPSFQK*

mRNA from alignment at scaffold_19:351571..353370-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7372 ID=mRNA_7372|Name=jgi.p|Nanoce1779_2|132568|organism=Nannochloropsis oceanica|type=mRNA|length=1800bp|location=Sequence derived from alignment at scaffold_19:351571..353370- (Nannochloropsis oceanica)
GGAAGATGCCCACTATGCACTCGCTGCATTTTGTGCACTCGCCACATCTT
TATCTAAAGATGTGCTGGATAGCCTGAAATCAAATGGACGCGATCATGAT
TCGTAGCTGCGACCTCCCCACCCTTTTCCTCTCACGCAAAACATAATGCA
CCACACTCACACGCTCACAGCGGCGTCGGGCAAAGGTCCAGGATGTATCA
CCCCCTCCACCATTCGGGAGAAGGTGACGGCGGGGGCGAGGACGAAGAGG
GCGACCAGAACCCGACATTCTCATCCCTCTACAATGGGGAGGAGGAGGAG
GAGGAGGAGGAGAAGCAGAAAGAGCAGCTCGCCCATCACGCACAACAGCA
CCAACATCATCTTTCGCCACGGAATTTTAATGAAGCCATCGTACCAGCGA
ATGCTGCTGCTTCCTTCTTTCCCACTCCTCCTCTTTTTTACCCGGCGCCA
TCGGGAGGAGGAGGAGATGAAGCCGAGGGTTTGGAGAGTCGGCAACAGCA
GCAGGAGCAGCGCTTCCATCACCAACATGAAGGCATGCATGTGTCTTCGA
CTTCCGTGTCAACGTCAGCGAACAAAGCCTTAAATCCTCCCACCACAACT
ACTACTTGTGACCACCATACTTTAACACCAAGCAGCAGTAGCAATAGCAG
CAGCAATAGCAGCGGCAGCAGCAGTGTCCGAAGTACCACCAGTCGCAATC
TAAACGTACCTGGTGCGGTGATTGTATTGGGCCAAGCATCTTTTACCCAT
GCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCACTCCCACCAAACGC
CACATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGA
GAGGAGGAATCACTACTTCGGGATCCCCTTATTCCTCCCCCTCTTCCCCG
TCCTCCACCTCAATGGTGCTGAGAGAATGCTTTGGCTTCTCTGCGGGTAG
AATCAAGGCCGGCGCTTCTCTCTTAGGGAAATTAAGTGCTATTTTGGAAG
AAGGAGGAAGGGTAGAAGCCCGTCCTGCAGCAGGAGTGGAGGGAGGGAGG
GAGGAAGGGAAGGAGGAAGATTTGGAAGAGGCAGCAGCGTTGGCGAGCGT
TGTGATGAGTGAGATGGGAGGAGATGCGCGAAAGGCTCGTTTTTTGCTCG
CGGCCTGTGCAGGAGGGGAGGGAGGGAGGGAGAAAGAGAGAGGTGAAAGC
GTGGGCGGTCGACTTCGCCGGGCCCTCAAAGCTTTTGCTGAGCCCCCTCC
AGTCTACCCCTCCCTCCCTCCCTCCTTCCTTCCACCCCACCTGATGATTG
TGGTGAAAGACCCTTCCGAGTGTTTGCGCCTGGCCAAGCGAGCAGTAGGA
TCAGGGCTGAGGGTGAGTGTAGCGCGCCACCCTTGCCATGTTCTGAGTGA
GGTGGTGGAGGAGGATGAAGTTTTTTTTCAGGGGATGGTCCTAGAAGCCG
ACTTTTCAGTGGTGTCCGGCCTGGAGGCAGCGATGAAGTTCCGGACATTG
CCTTCCCCAGGAGTGGGGGAAGGCAGGGGGAAGGAAGGGGGACAGGCACA
GTCAGCGACGGCGAACCTAATGATGGTGATGGTGGTGAATGGAAGTCCGC
ATGCCAATTATTCAGGTGCGTCTGCCTCCCTCTCTCCCTCCCTCCCTCCC
TCCTTCCCTTCCTCCCTTCCCCCGTCATTTCAAAAGTAAACCATCCACTC
AACCTCCGTCTGTCTATCTGTGCTTATTTCTCTTCTTCCTTCCTTCTCTC
CTTCTCTCCTACCTTTCCTTCCTCCTTCCTTCTCTTCCTCCCTCCTTCCT

Coding sequence (CDS) from alignment at scaffold_19:351571..353370-

>mRNA_7372 ID=mRNA_7372|Name=jgi.p|Nanoce1779_2|132568|organism=Nannochloropsis oceanica|type=CDS|length=1497bp|location=Sequence derived from alignment at scaffold_19:351571..353370- (Nannochloropsis oceanica)
ATGTATCACCCCCTCCACCATTCGGGAGAAGGTGACGGCGGGGGCGAGGA
CGAAGAGGGCGACCAGAACCCGACATTCTCATCCCTCTACAATGGGGAGG
AGGAGGAGGAGGAGGAGGAGAAGCAGAAAGAGCAGCTCGCCCATCACGCA
CAACAGCACCAACATCATCTTTCGCCACGGAATTTTAATGAAGCCATCGT
ACCAGCGAATGCTGCTGCTTCCTTCTTTCCCACTCCTCCTCTTTTTTACC
CGGCGCCATCGGGAGGAGGAGGAGATGAAGCCGAGGGTTTGGAGAGTCGG
CAACAGCAGCAGGAGCAGCGCTTCCATCACCAACATGAAGGCATGCATGT
GTCTTCGACTTCCGTGTCAACGTCAGCGAACAAAGCCTTAAATCCTCCCA
CCACAACTACTACTTGTGACCACCATACTTTAACACCAAGCAGCAGTAGC
AATAGCAGCAGCAATAGCAGCGGCAGCAGCAGTGTCCGAAGTACCACCAG
TCGCAATCTAAACGTACCTGGTGCGGTGATTGTATTGGGCCAAGCATCTT
TTACCCATGCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCACTCCCA
CCAAACGCCACATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCGAGAGGAGGAATCACTACTTCGGGATCCCCTTATTCCTCCCCCT
CTTCCCCGTCCTCCACCTCAATGGTGCTGAGAGAATGCTTTGGCTTCTCT
GCGGGTAGAATCAAGGCCGGCGCTTCTCTCTTAGGGAAATTAAGTGCTAT
TTTGGAAGAAGGAGGAAGGGTAGAAGCCCGTCCTGCAGCAGGAGTGGAGG
GAGGGAGGGAGGAAGGGAAGGAGGAAGATTTGGAAGAGGCAGCAGCGTTG
GCGAGCGTTGTGATGAGTGAGATGGGAGGAGATGCGCGAAAGGCTCGTTT
TTTGCTCGCGGCCTGTGCAGGAGGGGAGGGAGGGAGGGAGAAAGAGAGAG
GTGAAAGCGTGGGCGGTCGACTTCGCCGGGCCCTCAAAGCTTTTGCTGAG
CCCCCTCCAGTCTACCCCTCCCTCCCTCCCTCCTTCCTTCCACCCCACCT
GATGATTGTGGTGAAAGACCCTTCCGAGTGTTTGCGCCTGGCCAAGCGAG
CAGTAGGATCAGGGCTGAGGGTGAGTGTAGCGCGCCACCCTTGCCATGTT
CTGAGTGAGGTGGTGGAGGAGGATGAAGTTTTTTTTCAGGGGATGGTCCT
AGAAGCCGACTTTTCAGTGGTGTCCGGCCTGGAGGCAGCGATGAAGTTCC
GGACATTGCCTTCCCCAGGAGTGGGGGAAGGCAGGGGGAAGGAAGGGGGA
CAGGCACAGTCAGCGACGGCGAACCTAATGATGGTGATGGTGGTGAATGG
AAGTCCGCATGCCAATTATTCAGGTGCGTCTGCCTCCCTCTCTCCCTCCC
TCCCTCCCTCCTTCCCTTCCTCCCTTCCCCCGTCATTTCAAAAGTAA

Synonyms

Publications