jgi.p|Nanoce1779_2|598485, mRNA_7371 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598485
Unique NamemRNA_7371
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length639
Alignment locationscaffold_19:346170..346808 +

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Properties
Property NameValue
TranscriptId598571
TrackFilteredModels2
ProteinId598485
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:346170..346808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598485gene_7371Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598485mRNA_7371-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7371CDS_7371Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7371 ID=mRNA_7371|Name=jgi.p|Nanoce1779_2|598485|organism=Nannochloropsis oceanica|type=mRNA|length=639bp
GGAGGAGGAGGAGGAGGAGGAGGAAGGAGGTGGGGGTGGGATGACACGAC
GACGGCGTCCGCTGCGGCCTGTGATAGAGATAGGCTCGGCAGCAGCAGCG
GCAGCCTTGGCCTTCTTCCGCTCCTCGCTCCTCTCCTTTTTCTCTTTCTT
CCGGGTCTCCTTCGCTAGGCGCTTTGCTTCCTCTTTCTTGAACTTCTGCT
GCTTCTCCTTCTTCTTCTTGGCTAGCGCTGCGGCAGCAAGTACATTCTTT
TTGCCCTTTCCCTCAGGAGGAGCATCACTCGTCGCAATGTCCTCCCCTAC
CCTCCTCTTCCCTACTCCCTCTACAATCGCTGCTGATCCCTTCTTCCCTC
CCTTCGTCCCAGCAGCTGGCGATACAACTACCGTCTTCTTGACTCTTTTC
CCTCCCTTCTTTGCCTTATTAATATAGTCTTTCTCCCCTTCTTCCTGTTT
CTCCTCTTTTCCTTCGTCATTCTCCATCTCTGCATTGATCTTCCTTTTCG
GCGTCCTCTTTCTACCTTTCCTGGCAACTGCGGTATCAGTCGTTGAAGCA
GCAGCAGCAGCAGCGGCGGCAGCAGCAGTAGTTGTGATAGCCTTACCTTT
GCCCTTTCCTTTCTGCTTTCCACTCTTCTGCTGCTGCTG
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protein sequence of jgi.p|Nanoce1779_2|598485

>mRNA_7371-protein ID=mRNA_7371-protein|Name=jgi.p|Nanoce1779_2|598485|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MTRRRRPLRPVIEIGSAAAAAALAFFRSSLLSFFSFFRVSFARRFASSFL
NFCCFSFFFLASAAAASTFFLPFPSGGASLVAMSSPTLLFPTPSTIAADP
FFPPFVPAAGDTTTVFLTLFPPFFALLI*
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mRNA from alignment at scaffold_19:346170..346808+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7371 ID=mRNA_7371|Name=jgi.p|Nanoce1779_2|598485|organism=Nannochloropsis oceanica|type=mRNA|length=639bp|location=Sequence derived from alignment at scaffold_19:346170..346808+ (Nannochloropsis oceanica)
GGAGGAGGAGGAGGAGGAGGAGGAAGGAGGTGGGGGTGGGATGACACGAC
GACGGCGTCCGCTGCGGCCTGTGATAGAGATAGGCTCGGCAGCAGCAGCG
GCAGCCTTGGCCTTCTTCCGCTCCTCGCTCCTCTCCTTTTTCTCTTTCTT
CCGGGTCTCCTTCGCTAGGCGCTTTGCTTCCTCTTTCTTGAACTTCTGCT
GCTTCTCCTTCTTCTTCTTGGCTAGCGCTGCGGCAGCAAGTACATTCTTT
TTGCCCTTTCCCTCAGGAGGAGCATCACTCGTCGCAATGTCCTCCCCTAC
CCTCCTCTTCCCTACTCCCTCTACAATCGCTGCTGATCCCTTCTTCCCTC
CCTTCGTCCCAGCAGCTGGCGATACAACTACCGTCTTCTTGACTCTTTTC
CCTCCCTTCTTTGCCTTATTAATATAGTCTTTCTCCCCTTCTTCCTGTTT
CTCCTCTTTTCCTTCGTCATTCTCCATCTCTGCATTGATCTTCCTTTTCG
GCGTCCTCTTTCTACCTTTCCTGGCAACTGCGGTATCAGTCGTTGAAGCA
GCAGCAGCAGCAGCGGCGGCAGCAGCAGTAGTTGTGATAGCCTTACCTTT
GCCCTTTCCTTTCTGCTTTCCACTCTTCTGCTGCTGCTG
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Coding sequence (CDS) from alignment at scaffold_19:346170..346808+

>mRNA_7371 ID=mRNA_7371|Name=jgi.p|Nanoce1779_2|598485|organism=Nannochloropsis oceanica|type=CDS|length=387bp|location=Sequence derived from alignment at scaffold_19:346170..346808+ (Nannochloropsis oceanica)
ATGACACGACGACGGCGTCCGCTGCGGCCTGTGATAGAGATAGGCTCGGC
AGCAGCAGCGGCAGCCTTGGCCTTCTTCCGCTCCTCGCTCCTCTCCTTTT
TCTCTTTCTTCCGGGTCTCCTTCGCTAGGCGCTTTGCTTCCTCTTTCTTG
AACTTCTGCTGCTTCTCCTTCTTCTTCTTGGCTAGCGCTGCGGCAGCAAG
TACATTCTTTTTGCCCTTTCCCTCAGGAGGAGCATCACTCGTCGCAATGT
CCTCCCCTACCCTCCTCTTCCCTACTCCCTCTACAATCGCTGCTGATCCC
TTCTTCCCTCCCTTCGTCCCAGCAGCTGGCGATACAACTACCGTCTTCTT
GACTCTTTTCCCTCCCTTCTTTGCCTTATTAATATAG
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Synonyms
Publications