jgi.p|Nanoce1779_2|598483, mRNA_7370 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598483
Unique NamemRNA_7370
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length843
Alignment locationscaffold_19:344932..345774 -

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Properties
Property NameValue
TranscriptId598569
TrackFilteredModels2
ProteinId598483
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:344932..345774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598483gene_7370Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598483mRNA_7370-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7370CDS_7370Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7370 ID=mRNA_7370|Name=jgi.p|Nanoce1779_2|598483|organism=Nannochloropsis oceanica|type=mRNA|length=843bp
TGCCGCCGCCGCCGCCGCCGCAGCAGCAGCAGTAGTGGTAAGAGGAAGAG
GGAGGAGAAGAGGTAGCACTACAGCTGCGAGGATATCAGACCGTGGAGGG
GGACAAGAAGATGAAGAAACGCAAGAGACGGAAGAAGAAAAAGATAGGGA
GGAGAACAACAACCCCCTCCCTCCTTCTCTTCCCATCGAGGAGGGCGCTG
CCACTGTCGTAACCGCCGCTGTCACCGCCACCGCGACAGCACCAGTGGTG
GTGGGACCTCAGGTAGAGATTGTGAACGGCCAGATCGTCATTAATCAGAA
ATCCCTTGAAGTCGTGTCGAGGCCCGAGGAGGCAGGGGAGGAGGGATGGA
TGGAGGAAGTGATCGAAGATCCCCAGCAGGCGGCTACCTACAACTCCTTC
ACGACCCGGACGAAAGCGACGCGATGGACAGAGGCCGAAACCCGGTCATT
TTATCAAGCGCTCCGGCAGTGCGGGACGGACTTCACCACCATGGCTTCCT
TGTTGTTTGATGGGAAACGGGATAGGGCCCAACTGAAGAATAAATTCAAG
AAGGAAGAGAAGGCGCACGGGGCGTTAGTCTACCGTTACCTTGATAGCAC
CCAGCCATTGGTGGTGCCTCCTGGGATAGGGGAGGAGGAAGAGGGTGGAC
GGGGGGAAAGAGAATAGGAGTGAGAAGAAGGGAGGGAGGAAGAGTGAGTA
TGTATGGGATGACCTTCAGAGGAAAGGGAAGGCGAATCATGCATGACAAT
AATGAGATAATGAGGGAGGGAGGGAGGACGGGAGGGAGTGACGGTGTAGT
TTAAATGTATGTAAGGCAGTCAGATAAATGGGCGAAAAAAACA
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protein sequence of jgi.p|Nanoce1779_2|598483

>mRNA_7370-protein ID=mRNA_7370-protein|Name=jgi.p|Nanoce1779_2|598483|organism=Nannochloropsis oceanica|type=polypeptide|length=106bp
MEEVIEDPQQAATYNSFTTRTKATRWTEAETRSFYQALRQCGTDFTTMAS
LLFDGKRDRAQLKNKFKKEEKAHGALVYRYLDSTQPLVVPPGIGEEEEGG
RGERE*
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mRNA from alignment at scaffold_19:344932..345774-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7370 ID=mRNA_7370|Name=jgi.p|Nanoce1779_2|598483|organism=Nannochloropsis oceanica|type=mRNA|length=843bp|location=Sequence derived from alignment at scaffold_19:344932..345774- (Nannochloropsis oceanica)
TGCCGCCGCCGCCGCCGCCGCAGCAGCAGCAGTAGTGGTAAGAGGAAGAG
GGAGGAGAAGAGGTAGCACTACAGCTGCGAGGATATCAGACCGTGGAGGG
GGACAAGAAGATGAAGAAACGCAAGAGACGGAAGAAGAAAAAGATAGGGA
GGAGAACAACAACCCCCTCCCTCCTTCTCTTCCCATCGAGGAGGGCGCTG
CCACTGTCGTAACCGCCGCTGTCACCGCCACCGCGACAGCACCAGTGGTG
GTGGGACCTCAGGTAGAGATTGTGAACGGCCAGATCGTCATTAATCAGAA
ATCCCTTGAAGTCGTGTCGAGGCCCGAGGAGGCAGGGGAGGAGGGATGGA
TGGAGGAAGTGATCGAAGATCCCCAGCAGGCGGCTACCTACAACTCCTTC
ACGACCCGGACGAAAGCGACGCGATGGACAGAGGCCGAAACCCGGTCATT
TTATCAAGCGCTCCGGCAGTGCGGGACGGACTTCACCACCATGGCTTCCT
TGTTGTTTGATGGGAAACGGGATAGGGCCCAACTGAAGAATAAATTCAAG
AAGGAAGAGAAGGCGCACGGGGCGTTAGTCTACCGTTACCTTGATAGCAC
CCAGCCATTGGTGGTGCCTCCTGGGATAGGGGAGGAGGAAGAGGGTGGAC
GGGGGGAAAGAGAATAGGAGTGAGAAGAAGGGAGGGAGGAAGAGTGAGTA
TGTATGGGATGACCTTCAGAGGAAAGGGAAGGCGAATCATGCATGACAAT
AATGAGATAATGAGGGAGGGAGGGAGGACGGGAGGGAGTGACGGTGTAGT
TTAAATGTATGTAAGGCAGTCAGATAAATGGGCGAAAAAAACA
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Coding sequence (CDS) from alignment at scaffold_19:344932..345774-

>mRNA_7370 ID=mRNA_7370|Name=jgi.p|Nanoce1779_2|598483|organism=Nannochloropsis oceanica|type=CDS|length=318bp|location=Sequence derived from alignment at scaffold_19:344932..345774- (Nannochloropsis oceanica)
ATGGAGGAAGTGATCGAAGATCCCCAGCAGGCGGCTACCTACAACTCCTT
CACGACCCGGACGAAAGCGACGCGATGGACAGAGGCCGAAACCCGGTCAT
TTTATCAAGCGCTCCGGCAGTGCGGGACGGACTTCACCACCATGGCTTCC
TTGTTGTTTGATGGGAAACGGGATAGGGCCCAACTGAAGAATAAATTCAA
GAAGGAAGAGAAGGCGCACGGGGCGTTAGTCTACCGTTACCTTGATAGCA
CCCAGCCATTGGTGGTGCCTCCTGGGATAGGGGAGGAGGAAGAGGGTGGA
CGGGGGGAAAGAGAATAG
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Synonyms
Publications